prot_S-ischiensis_contig8.19500.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19500.1
Unique Nameprot_S-ischiensis_contig8.19500.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length383
Homology
BLAST of mRNA_S-ischiensis_contig8.19500.1 vs. uniprot
Match: D7FK42_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.470e-32
Identity = 80/187 (42.78%), Postives = 105/187 (56.15%), Query Frame = 0
Query:  173 RQTIVEDFAGVADVCHNAAATCEGLELLLTWCGEQGAVVASILWADLTSNFSTVTVKTCTPSQPCQRWNCPCGGQPRVSQAHAPIIGVLLTLPPKDTAREKDGRGWLELLVTSVTDVPGSGEGEGNFLLPLAPCEGE-----AGGGWELPFTCEVDLEGRWEAFGRLLSMDGVDKVMFNAQVGLLPW 354
            R+  ++DFAG  DVC NAAA+ EGL + L  C   G    S+LWADLT++FS +TVK+C PSQ C RWNC CG QPR  QA AP+IG ++ LP +            E   +  +      EGE  +LLPLA C GE        G+ LP  CE   + RW AF +L+++  V KV   A + L+ W
Sbjct:  421 RRYKLDDFAGADDVCFNAAASSEGLAIFLERCEASGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRQPRAQQATAPMIGAVVYLPGRAERIAWGASAGTESDTSGCSQEDDFEEGE-MYLLPLAACVGEDKEAAKAAGYHLPLDCETSYDERWAAFAKLVALP-VKKV---ALMPLIAW 602          
BLAST of mRNA_S-ischiensis_contig8.19500.1 vs. uniprot
Match: A0A6H5J5W8_9PHAE (POLAc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5W8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 4.830e-15
Identity = 64/185 (34.59%), Postives = 80/185 (43.24%), Query Frame = 0
Query:  173 RQTIVEDFAGVADVCHNAAATC----------------------------EGLELLLTWCGEQGAVVASILWADLTSNFSTVTVKTCTPSQPCQRWNCPCGGQPRVSQAHAPIIGVLLTLPPKDTAREKDGRGWLELLVTSVTDVPGSGEGEGNFLLPLAPCEGE-----AGGGWELPFTCEVDL 324
            R+  ++DFAG  DVC NAA+T                             EGL + L  C   G    S+LWADLT++FS +TVK+C PSQ C RWNC CG Q      +A   GV     P  +          E   +  +      EGE  +LLPL  C GE        G+ LP  CEV L
Sbjct:  370 RRYKLDDFAGADDVCFNAASTVQTSTMGRLPPYPATSPAVILPRNSAASSEGLAIFLERCEVSGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRQ---GLCYAFFRGV----DPSPSLLTCASAARTESDTSGCSQEDDFEEGE-MYLLPLGACVGEDKEAAEAAGYHLPLDCEVAL 546          
BLAST of mRNA_S-ischiensis_contig8.19500.1 vs. uniprot
Match: A0A7S2WV29_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV29_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.020e-7
Identity = 39/82 (47.56%), Postives = 47/82 (57.32%), Query Frame = 0
Query:  175 TIVEDF-AGV-ADVCHNAAATCEGLELLLTWCG-EQGAVVASILWAD--LTSNFSTVTVKTCTPSQPCQRWNCPCGGQPRVS 251
            TI  DF  G+ +D     AA C  LE L +W   E G V   I+W D  L++NFSTV  K CTP  PC +WNC CG +PR S
Sbjct:   66 TIKPDFFQGMDSDPSIENAACC--LEKLESWINAESGLVHIGIMWRDQDLSTNFSTVGKKYCTPKWPCFKWNCTCGRRPRAS 145          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19500.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK42_ECTSI1.470e-3242.78DNA-directed DNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5J5W8_9PHAE4.830e-1534.59POLAc domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2WV29_9STRA8.020e-747.56Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1833698..1839982 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19500.1mRNA_S-ischiensis_contig8.19500.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 1833697..1839982 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19500.1 ID=prot_S-ischiensis_contig8.19500.1|Name=mRNA_S-ischiensis_contig8.19500.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=383bp
SSRWAEANLLSPTPALLASQAHPVGPSVSDILSAPPPLPPPRARRKRPRA
QQAASRAGARAGPGPPAPGPGLGWAGDGTDGEAEVCVMPPLLGGGNQPQG
RCRGRGRGQGRGQGMGKERARTPPRTPPVDTAPRGCSPRQSQNASPRARR
RLSAAEGLGGVSSRGAGLAGMRRQTIVEDFAGVADVCHNAAATCEGLELL
LTWCGEQGAVVASILWADLTSNFSTVTVKTCTPSQPCQRWNCPCGGQPRV
SQAHAPIIGVLLTLPPKDTAREKDGRGWLELLVTSVTDVPGSGEGEGNFL
LPLAPCEGEAGGGWELPFTCEVDLEGRWEAFGRLLSMDGVDKVMFNAQVG
LLPWVAHCGAGAAWARGAGGPGGAAGRGCVDSS
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