mRNA_S-ischiensis_contig8.19432.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19432.1
Unique NamemRNA_S-ischiensis_contig8.19432.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19432.1 vs. uniprot
Match: A0A6H5KKU1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKU1_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.120e-23
Identity = 62/150 (41.33%), Postives = 88/150 (58.67%), Query Frame = 1 
Query:    1 TIVFSSIDHPILREWALPSTDVEVLPSGLVLEDLGAEEGAVTKLKALLSWDSKGALQSMYKMSYLSERSERMAKLEDQLAAMEYEYMEQRA---------------REMAAPVPPVPVPESPLGDTVMAQLARLKSQTPAPAGKAGAKAG 405
            TIVF++I+HPI+REWAL   DVEV PSGLVLE++ +  G VT++  L+ WD+KG LQ M KMSY++ER++R+  L   L AME  Y+EQ+A               ++ +A  P  P+   P    V  +    + +T   AGKA +  G
Sbjct:  387 TIVFTTIEHPIMREWALAGVDVEVFPSGLVLEEMESPAGPVTRVHGLIGWDNKGTLQHMAKMSYMTERADRLEGLGQHLRAMERGYLEQQAGNGDSSVLGPTDPPPKQQSARPPSTPISRGPGFPAVRRRSTGGRFETATAAGKAWSGGG 536
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKU1_9PHAE5.120e-2341.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1409230..1411932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue4.2e-19
Seed eggNOG ortholog2880.D8LNH7
KEGG rclassRC00002,RC00078
KEGG koko:K00914,ko:K04679
KEGG ReactionR03362
KEGG Pathwayko00562,ko01100,ko04070,ko04136,ko04138,ko04140,ko04144,ko04145,ko04350,ko04371,ko05152,ko05167,map00562,map01100,map04070,map04136,map04138,map04140,map04144,map04145,map04350,map04371,map05152,map05167
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981
EggNOG free text desc.1-phosphatidylinositol binding
EggNOG OGsCOG5032@1,KOG0906@2759,KOG1841@1,KOG1841@2759
EC2.7.1.137
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size606
Cds size603
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19432.1prot_S-ischiensis_contig8.19432.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1409231..1411932 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817258.3366494-CDS-S-ischiensis_contig8:1409230..14092581622817258.3366494-CDS-S-ischiensis_contig8:1409230..1409258Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1409231..1409258 -
1695740975.4828427-CDS-S-ischiensis_contig8:1409230..14092581695740975.4828427-CDS-S-ischiensis_contig8:1409230..1409258Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1409231..1409258 -
1622817258.3480122-CDS-S-ischiensis_contig8:1409672..14098811622817258.3480122-CDS-S-ischiensis_contig8:1409672..1409881Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1409673..1409881 -
1695740975.4952254-CDS-S-ischiensis_contig8:1409672..14098811695740975.4952254-CDS-S-ischiensis_contig8:1409672..1409881Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1409673..1409881 -
1622817258.3592672-CDS-S-ischiensis_contig8:1410650..14107881622817258.3592672-CDS-S-ischiensis_contig8:1410650..1410788Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1410651..1410788 -
1695740975.5056822-CDS-S-ischiensis_contig8:1410650..14107881695740975.5056822-CDS-S-ischiensis_contig8:1410650..1410788Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1410651..1410788 -
1622817258.3694816-CDS-S-ischiensis_contig8:1411451..14115651622817258.3694816-CDS-S-ischiensis_contig8:1411451..1411565Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1411452..1411565 -
1695740975.5185432-CDS-S-ischiensis_contig8:1411451..14115651695740975.5185432-CDS-S-ischiensis_contig8:1411451..1411565Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1411452..1411565 -
1622817258.3808203-CDS-S-ischiensis_contig8:1411818..14119321622817258.3808203-CDS-S-ischiensis_contig8:1411818..1411932Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1411819..1411932 -
1695740975.5304258-CDS-S-ischiensis_contig8:1411818..14119321695740975.5304258-CDS-S-ischiensis_contig8:1411818..1411932Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1411819..1411932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19432.1

>prot_S-ischiensis_contig8.19432.1 ID=prot_S-ischiensis_contig8.19432.1|Name=mRNA_S-ischiensis_contig8.19432.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=201bp
TIVFSSIDHPILREWALPSTDVEVLPSGLVLEDLGAEEGAVTKLKALLSW
DSKGALQSMYKMSYLSERSERMAKLEDQLAAMEYEYMEQRAREMAAPVPP
VPVPESPLGDTVMAQLARLKSQTPAPAGKAGAKAGTDEAEDDETLLDWRE
RSLSRAMPLGSARMQGENLDGGDVALAAPSQSFFALDEGIRRTSAGGTSA
R
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mRNA from alignment at S-ischiensis_contig8:1409230..1411932-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19432.1 ID=mRNA_S-ischiensis_contig8.19432.1|Name=mRNA_S-ischiensis_contig8.19432.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2703bp|location=Sequence derived from alignment at S-ischiensis_contig8:1409230..1411932- (Schizocladia ischiensis KU_0333)
ACCATCGTCTTCTCCAGCATTGACCACCCCATTCTCAGAGAGTGGGCCCT
GCCGAGCACGGACGTGGAGGTGCTCCCCTCGGGACTCGTGCTGGAAGACC
TCGGGGCAGAGGAGGTGAGAAACGGGCGCTCAGAGTTTGAGACATTTAAT
TTTAGTAGAGTACACGTGCTCTACGGCACCCGCTGGCTTGTCTGGCGACA
TAAGCCTTGCGTGCGTTGCCGACAGCCCTAAGTCGAAACTTCGGGTTTGC
CCTCCGACAGGAGTAGTACACACATATGCCCTCCCCTCCCGTCCCTTACC
CTCCCCTCCCCTCCCCTCCGCTGGCTTGCTCCCGCCGCCACTGCTGCCGC
CGCCGCCGCCTTGGCAGGGAGCCGTGACGAAGCTCAAGGCCCTCCTGAGC
TGGGACAGCAAGGGCGCCCTGCAGAGCATGTACAAGATGTCCTACCTGTC
TGAGCGATCCGAGCGCATGGCCAAGTTGGAGGCAAGCCCCGCCGTAATAT
CGTGTGTGGTTGGAAGTAAAGCAGTGCCGTGCAGTACGGTAGAGTACAGT
ACAGTACGAGTTCTCTACTGTACGCGCGCTCGCTGTCCGGCTGCTGCTGT
ATCGTGTGTACTTGGAAGTAGAGCAGTGCGGTACAGTACGGTACAGTACA
CTGCAGTACCGCACAGTACACTGCAGTACAGCACAGTACAGTACTGTACT
GTACGAGTTCGCTACTGTAGCTAGCTGTGCCCGGCTGCTACTGTAACATC
GCGTGTACTTGGAAGCAAAGCAATGCAGTACAGTACCTAGCATGTATCGA
AACGCCGCTGCTGCATGGCCCAAGTGCCCGTGTTTCGTACGTACCTAGCC
CTCTACCACCACAGGGCGAGGCGCAGCGCTCACAACGTACTGTACATTGA
AGCCAGCCTACGGTACCTACTCCCTAGCACACTCCCTCCCCCGAGCACCT
GATAGAGGATGCCGTCGACACAATAGCTCAAGCCCTTCCCTTCCGCCTCT
TGGTTGCTAACTTAAGTGTTGAATCGCTGCTTCGGTCAACCATAGAGTAT
GCCGTCGACACAATAATAGCTCACGCCCTTCCCTTCCGCCTCTTGGTCGC
TAGAGTGTTGAATTGCTGCTGTCACGGGCCGTGAACATGAACAGGACCAG
CTGGCGGCCATGGAGTACGAGTACATGGAGCAGCGTGCAAGGGAGATGGC
CGCGCCCGTGCCCCCGGTGCCCGTGCCGGAATCTCCCCTGGGGGACACGG
TCATGGCGCAGCTGGCACGCCTCAAGAGCCAGGTGGGAGTGACGGCCGGG
GGGCTACTCATGAGTTGCCTGCCGTAGCCACATGGCAAATGACCGCGCGT
CCCAAAGGGGGGGTGAACGGCAGTTTGTTCAAACTTTTTAAGACTGATGA
CACACGCGCGGGTTTCTTGGGCCCCTTCCCAAGCTTGGGGCCTCCCATGA
GCACAAGCAGTTTTGGCGGTTACAGTGTGTAGGATGGCGTTTTAGGGCAC
CGGGCACAGTGGTTAGGAAGCAGAGCTTTCGATGTACCCAGTAGTTTTGT
GGTGTAGAGTGGAAATACACGATCGAGTTCCAGGGGTCATTCCCCAGATT
TGGCGCCTCACGAGAAGCCCGTGTTTTTCTTTCGCTTGCAGGGCAGAAAA
AAAAATTCACAGGGTGGGGGGCGTTTTCGCGTCGCTGAGCCTTTTTCCCC
GGCTGGTCGATTGTTTGTCTCTTACCCGTTGAGGGCGATGGGACACTACT
GTGATGTACTGTGATGTGATGGGATGTACATTGGAGTACAAGAGACTCCC
CTTCCCCGCCCCTTCCCTTTCCTTATTAATTTCTTGTTTTCTTCTTGCCC
TGCGAGGGAAGGAAGGGCTTCGTTGAGTCCTGTTTTGGGACGAGCGTTTT
GGCACGGGGCCTGGAACTCGCCGCTTATCTACCAATCAATTAGAGTAACA
CCGAAGGGCAACAACTAACAACAACAACAACAACAAAAATCAAAAAAATC
TTGTTGGGACGGCGCCGCCCCCCCGTGGGTGACCCACATGGGGGGGAGCA
GACTCCAGCACCAGCAGGCAAGGCCGGCGCCAAGGCGGGTACGGATGAGG
CGGAGGACGACGAGACCCTCCTGGACTGGCGGGAGCGCTCCTTGTCCCGG
GCCATGCCCCTGGGGTCGGCGCGCATGCAGGGGGAGAACCTGGACGGCGG
GGACGTGGCACTGGCGGCCCCTTCCCAGAGCTTCTTCGCCTTGGACGAGG
GCATCCGCCGGTAAGTTACAAGTTATTGTCAGCGCGCTGTGTGTGTGTGT
GTGTGTGTGTATGCGTGCGTGTTTGTGTGTGTGCGTGTGTGTGTGTGCGC
GTGCGTGCGTGTGTACTTCGAAGAACGCGCGCTCGTGTCTGTGTGTGTGT
GCGTGCGTGCGTGTCTAATCCGAATAGCCCGCGCGGGCGTGTGTGTGCGT
GCGTGCGTGCGTGCATGTGGTGTGTGTGTGCGCACGTGCGCGTGTCTCTG
TCTCTGATCACATCACATCACATCAATCTCAACGAGCACAACACTCCGTT
TCGCACCCGTGGGCGAGGTTGTACCCTCCCTCGTCGAAACTTCCTCTATT
GAACCCCTGCCTGCACGTCTTCCCGCCAAACTTCTCTCTGCAACCCCCCG
CGCTTGCTCTTGGTTTGCGAGCAGGACCTCGGCTGGGGGCACATCAGCGC
GGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1409230..1411932-

>mRNA_S-ischiensis_contig8.19432.1 ID=mRNA_S-ischiensis_contig8.19432.1|Name=mRNA_S-ischiensis_contig8.19432.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1206bp|location=Sequence derived from alignment at S-ischiensis_contig8:1409230..1411932- (Schizocladia ischiensis KU_0333)
ACCATCGTCTTCTCCAGCATTGACCACCCCATTCTCAGAGAGTGGGCCCT
GCCGAGCACGGACGTGGAGGTGCTCCCCTCGGGACTCGTGCTGGAAGACC
TCGGGGCAGAGGAGACCATCGTCTTCTCCAGCATTGACCACCCCATTCTC
AGAGAGTGGGCCCTGCCGAGCACGGACGTGGAGGTGCTCCCCTCGGGACT
CGTGCTGGAAGACCTCGGGGCAGAGGAGGGAGCCGTGACGAAGCTCAAGG
CCCTCCTGAGCTGGGACAGCAAGGGCGCCCTGCAGAGCATGTACAAGATG
TCCTACCTGTCTGAGCGATCCGAGCGCATGGCCAAGTTGGAGGGAGCCGT
GACGAAGCTCAAGGCCCTCCTGAGCTGGGACAGCAAGGGCGCCCTGCAGA
GCATGTACAAGATGTCCTACCTGTCTGAGCGATCCGAGCGCATGGCCAAG
TTGGAGGACCAGCTGGCGGCCATGGAGTACGAGTACATGGAGCAGCGTGC
AAGGGAGATGGCCGCGCCCGTGCCCCCGGTGCCCGTGCCGGAATCTCCCC
TGGGGGACACGGTCATGGCGCAGCTGGCACGCCTCAAGAGCCAGGACCAG
CTGGCGGCCATGGAGTACGAGTACATGGAGCAGCGTGCAAGGGAGATGGC
CGCGCCCGTGCCCCCGGTGCCCGTGCCGGAATCTCCCCTGGGGGACACGG
TCATGGCGCAGCTGGCACGCCTCAAGAGCCAGACTCCAGCACCAGCAGGC
AAGGCCGGCGCCAAGGCGGGTACGGATGAGGCGGAGGACGACGAGACCCT
CCTGGACTGGCGGGAGCGCTCCTTGTCCCGGGCCATGCCCCTGGGGTCGG
CGCGCATGCAGGGGGAGAACCTGGACGGCGGGGACGTGGCACTGGCGGCC
CCTTCCCAGAGCTTCTTCGCCTTGGACGAGGGCATCCGCCGACTCCAGCA
CCAGCAGGCAAGGCCGGCGCCAAGGCGGGTACGGATGAGGCGGAGGACGA
CGAGACCCTCCTGGACTGGCGGGAGCGCTCCTTGTCCCGGGCCATGCCCC
TGGGGTCGGCGCGCATGCAGGGGGAGAACCTGGACGGCGGGGACGTGGCA
CTGGCGGCCCCTTCCCAGAGCTTCTTCGCCTTGGACGAGGGCATCCGCCG
GACCTCGGCTGGGGGCACATCAGCGCGGGACCTCGGCTGGGGGCACATCA
GCGCGG
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