mRNA_S-ischiensis_contig8.19401.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19401.1
Unique NamemRNA_S-ischiensis_contig8.19401.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19401.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.590e-26
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 2 
Query:   26 RAHLRGFFCFQVHKHHYVAFVYDKARREWLLLDDDQATAIGPDFAQVLSRCSQDQLHPSLFFYERESSGS 235
            +A LRGFFCFQV KHHYVAFVY++ R+EWLLLDDDQA  IGPDFA VL RC +D+LHPSLFF+ER+   +
Sbjct: 1852 KAQLRGFFCFQVQKHHYVAFVYNRDRQEWLLLDDDQAVPIGPDFAGVLGRCEEDKLHPSLFFFERKQDAT 1921
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BLAST of mRNA_S-ischiensis_contig8.19401.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.100e-25
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 2 
Query:   26 RAHLRGFFCFQVHKHHYVAFVYDKARREWLLLDDDQATAIGPDFAQVLSRCSQDQLHPSLFFYER 220
            +A LRGFFCFQV  HHYVAFVY++ R+EWLLLDDDQA  IGPDFA VL RC +D+LHPSLFF+ER
Sbjct: 2395 KAQLRGFFCFQVQMHHYVAFVYNRDRQEWLLLDDDQAVPIGPDFAGVLGRCEEDKLHPSLFFFER 2459
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BLAST of mRNA_S-ischiensis_contig8.19401.1 vs. uniprot
Match: A0A7S2D7M8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D7M8_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.560e-9
Identity = 27/68 (39.71%), Postives = 37/68 (54.41%), Query Frame = 2 
Query:   14 REPRRAHLRGFFCFQVHKHHYVAFVYDKARREWLLLDDDQATAIGPDFAQVLSRCSQDQLHPSLFFYE 217
            + P  AHL+ FFCF  HKHHY+ + YD   + W+L DD +   +G  +      CS     P +FFYE
Sbjct:  588 KRPLYAHLKCFFCFHPHKHHYIVYCYDPVLQLWILFDDSKVQPVGRRYHDAAMACSAGGFMPHVFFYE 655
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BLAST of mRNA_S-ischiensis_contig8.19401.1 vs. uniprot
Match: A0A4S4CWW5_CAMSI (USP domain-containing protein n=1 Tax=Camellia sinensis var. sinensis TaxID=542762 RepID=A0A4S4CWW5_CAMSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.450e-5
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 2 
Query:   71 HYVAFVYDKARREWLLLDDDQATAIGPDFAQVLSRCSQDQLHPSLFFYERESSGS 235
            HY+ FVY++A+  W+L DDD+   IG  +  VL+ CS+ +L P L F+E + S S
Sbjct:  439 HYICFVYNRAKENWILYDDDKVKVIG-SWDGVLAMCSRKRLQPQLLFFEVKGSVS 492
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LEW9_ECTSI2.590e-2671.43USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBH4_9PHAE3.100e-2575.38USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2D7M8_9STRA1.560e-939.71Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4S4CWW5_CAMSI2.450e-543.64USP domain-containing protein n=1 Tax=Camellia sin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1193036..1194010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size557
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19401.1prot_S-ischiensis_contig8.19401.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1193041..1193869 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817257.8701751-UTR-S-ischiensis_contig8:1193035..11930401622817257.8701751-UTR-S-ischiensis_contig8:1193035..1193040Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1193036..1193040 +
1695740975.1472414-UTR-S-ischiensis_contig8:1193035..11930401695740975.1472414-UTR-S-ischiensis_contig8:1193035..1193040Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1193036..1193040 +
1622817257.9042075-UTR-S-ischiensis_contig8:1193869..11940101622817257.9042075-UTR-S-ischiensis_contig8:1193869..1194010Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1193870..1194010 +
1695740975.1874728-UTR-S-ischiensis_contig8:1193869..11940101695740975.1874728-UTR-S-ischiensis_contig8:1193869..1194010Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1193870..1194010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817257.8815894-CDS-S-ischiensis_contig8:1193040..11931771622817257.8815894-CDS-S-ischiensis_contig8:1193040..1193177Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1193041..1193177 +
1695740975.1566014-CDS-S-ischiensis_contig8:1193040..11931771695740975.1566014-CDS-S-ischiensis_contig8:1193040..1193177Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1193041..1193177 +
1622817257.8927624-CDS-S-ischiensis_contig8:1193595..11938691622817257.8927624-CDS-S-ischiensis_contig8:1193595..1193869Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1193596..1193869 +
1695740975.1706107-CDS-S-ischiensis_contig8:1193595..11938691695740975.1706107-CDS-S-ischiensis_contig8:1193595..1193869Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1193596..1193869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19401.1

>prot_S-ischiensis_contig8.19401.1 ID=prot_S-ischiensis_contig8.19401.1|Name=mRNA_S-ischiensis_contig8.19401.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=137bp
MGRGSQGGRTCGGSSASRCISITTWRLCTTRQGGSGCCWTMTRPPRSGQT
LPRSSAGAPRTSCTRRSSSTSGSRRAPSGTAIPADPRAGSPLLGLRWAGC
SGTATGDAKTSRWDDRVERSSGREERKPMQKRKQQR*
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mRNA from alignment at S-ischiensis_contig8:1193036..1194010+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19401.1 ID=mRNA_S-ischiensis_contig8.19401.1|Name=mRNA_S-ischiensis_contig8.19401.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=975bp|location=Sequence derived from alignment at S-ischiensis_contig8:1193036..1194010+ (Schizocladia ischiensis KU_0333)
GCGGGATGGGAAGAGGGAGCCAAGGCGGGCGCACCTGCGGGGGTTCTTCT
GCTTCCAGGTGCATAAGCATCACTACGTGGCGTTTGTGTACGACAAGGCA
AGGCGGGAGTGGCTGCTGCTGGACGATGACCAGGCCACCGCGGTGAGCTG
AGCTGATCAGGACGTCCTGCTTTTGTCTTGTATTGTCAAGTGTTGTGCTT
TCACGGAAAAGTAGGGGTGCTTTGAAGTGCGGTGCGATAGATTCGTGGAG
TTGACCCTCGCTTGGCTTGAGAAGGAGGAGGTCATCCCTACATACGCGAG
TTCAGGGCCCCACCCCCGGAATTTTCGTTCTTGTCCGGGGTGTGCATTCG
TAGCCAGATCAATCAAGGCTTGCCAACGTCAAACTCCATCCCACCCCGTA
CGTACGGCCCCTCCCCTTTCCCCCTTCGCCTCTGAACCCCCCACCATCGC
CGTCTCCGATCGGCCCGGACTTTGCCCACTAACGTCCAACTACATCCCGC
CCCGTATGGCCCCTCTCCTTGCCCCCTGCCCCTGAACCCCCCCCGCCATG
GCCGTCTCAGATCGGGCCAGACTTTGCCCAGGTCCTCAGCCGGTGCTCCC
AGGACCAGCTGCACCCGTCGCTCTTCTTCTACGAGCGGGAGTCGTCGGGC
TCCTTCGGGGACGGCAATCCCAGCTGACCCGAGAGCCGGCTCACCCCTGC
TGGGCCTGCGGTGGGCGGGGTGCAGCGGGACGGCCACAGGGGATGCAAAG
ACGTCACGGTGGGACGATCGAGTCGAGAGATCGTCCGGTCGAGAGGAAAG
GAAGCCCATGCAGAAGCGGAAGCAGCAGCGGTAGCAGAAGAAGAGGGAGA
GAGGGTCGAGGGGGGAAGGAGGGACGGACGGACGGCCACGGGTTACGGCC
GCTTCAGGGGATTCACGCGTGCAGTGTGTTGTTGCACGCGCGCGCGGCCT
AACAACCAAGGCCTGACACGTGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1193036..1194010+

>mRNA_S-ischiensis_contig8.19401.1 ID=mRNA_S-ischiensis_contig8.19401.1|Name=mRNA_S-ischiensis_contig8.19401.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=822bp|location=Sequence derived from alignment at S-ischiensis_contig8:1193036..1194010+ (Schizocladia ischiensis KU_0333)
ATGGGAAGAGGGAGCCAAGGCGGGCGCACCTGCGGGGGTTCTTCTGCTTC
CAGGTGCATAAGCATCACTACGTGGCGTTTGTGTACGACAAGGCAAGGCG
GGAGTGGCTGCTGCTGGACGATGACCAGGCCACCGCGATGGGAAGAGGGA
GCCAAGGCGGGCGCACCTGCGGGGGTTCTTCTGCTTCCAGGTGCATAAGC
ATCACTACGTGGCGTTTGTGTACGACAAGGCAAGGCGGGAGTGGCTGCTG
CTGGACGATGACCAGGCCACCGCGATCGGGCCAGACTTTGCCCAGGTCCT
CAGCCGGTGCTCCCAGGACCAGCTGCACCCGTCGCTCTTCTTCTACGAGC
GGGAGTCGTCGGGCTCCTTCGGGGACGGCAATCCCAGCTGACCCGAGAGC
CGGCTCACCCCTGCTGGGCCTGCGGTGGGCGGGGTGCAGCGGGACGGCCA
CAGGGGATGCAAAGACGTCACGGTGGGACGATCGAGTCGAGAGATCGTCC
GGTCGAGAGGAAAGGAAGCCCATGCAGAAGCGGAAGCAGCAGCGGTAGAT
CGGGCCAGACTTTGCCCAGGTCCTCAGCCGGTGCTCCCAGGACCAGCTGC
ACCCGTCGCTCTTCTTCTACGAGCGGGAGTCGTCGGGCTCCTTCGGGGAC
GGCAATCCCAGCTGACCCGAGAGCCGGCTCACCCCTGCTGGGCCTGCGGT
GGGCGGGGTGCAGCGGGACGGCCACAGGGGATGCAAAGACGTCACGGTGG
GACGATCGAGTCGAGAGATCGTCCGGTCGAGAGGAAAGGAAGCCCATGCA
GAAGCGGAAGCAGCAGCGGTAG
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