mRNA_S-ischiensis_contig8.19300.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19300.1
Unique NamemRNA_S-ischiensis_contig8.19300.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:432794..434493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size382
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19300.1prot_S-ischiensis_contig8.19300.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 432796..434431 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817255.7158365-UTR-S-ischiensis_contig8:432793..4327951622817255.7158365-UTR-S-ischiensis_contig8:432793..432795Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 432794..432795 +
1695740973.7531345-UTR-S-ischiensis_contig8:432793..4327951695740973.7531345-UTR-S-ischiensis_contig8:432793..432795Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 432794..432795 +
1622817255.769864-UTR-S-ischiensis_contig8:434431..4344931622817255.769864-UTR-S-ischiensis_contig8:434431..434493Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 434432..434493 +
1695740973.797112-UTR-S-ischiensis_contig8:434431..4344931695740973.797112-UTR-S-ischiensis_contig8:434431..434493Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 434432..434493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817255.7298963-CDS-S-ischiensis_contig8:432795..4329451622817255.7298963-CDS-S-ischiensis_contig8:432795..432945Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 432796..432945 +
1695740973.7653852-CDS-S-ischiensis_contig8:432795..4329451695740973.7653852-CDS-S-ischiensis_contig8:432795..432945Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 432796..432945 +
1622817255.7447362-CDS-S-ischiensis_contig8:433171..4332601622817255.7447362-CDS-S-ischiensis_contig8:433171..433260Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 433172..433260 +
1695740973.775215-CDS-S-ischiensis_contig8:433171..4332601695740973.775215-CDS-S-ischiensis_contig8:433171..433260Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 433172..433260 +
1622817255.7570527-CDS-S-ischiensis_contig8:434352..4344311622817255.7570527-CDS-S-ischiensis_contig8:434352..434431Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 434353..434431 +
1695740973.7847052-CDS-S-ischiensis_contig8:434352..4344311695740973.7847052-CDS-S-ischiensis_contig8:434352..434431Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 434353..434431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19300.1

>prot_S-ischiensis_contig8.19300.1 ID=prot_S-ischiensis_contig8.19300.1|Name=mRNA_S-ischiensis_contig8.19300.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=106bp
MPWPPSDIFDEHGNLRPRRRPPPVKLDPADDNDALLDAIYEQIMSGTEHQ
PTCDPDIMASESEDGDYDEDGLTWHYSSTTFVPVEPGEEESARDQAIEDS
WLSRG*
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mRNA from alignment at S-ischiensis_contig8:432794..434493+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19300.1 ID=mRNA_S-ischiensis_contig8.19300.1|Name=mRNA_S-ischiensis_contig8.19300.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1700bp|location=Sequence derived from alignment at S-ischiensis_contig8:432794..434493+ (Schizocladia ischiensis KU_0333)
TGATGCCCTGGCCGCCATCGGACATCTTCGACGAGCACGGCAACCTCCGA
CCGCGCAGGCGCCCGCCGCCGGTGAAGCTCGACCCCGCCGATGACAACGA
CGCCCTCCTGGACGCCATCTATGAGCAGATCATGTCCGGCACTGAACACC
AGGTTCGTCTGTCCATCTGTAGAAGTCCGTCTGTAGTGGAAGTGAAGAGA
CAGGTGGCTGTCTGCCTGCAGCGAGGCATAAGTACGAATAGGTGCACTGA
GTGTCACTCTGGAGCTCAGTACTTGGCCGGCAAGTACAGGCCCTTGGTGG
CTGCCGCCGCCGCCGCCGCCGCTGCTAACGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTTGCCCTGCTGTCGCTGCAGCCTACATGCGACCCGGATATCA
TGGCCTCCGAGTCGGAGGACGGGGACTACGACGAGGACGGGTTGACCTGG
CACTACTCAAGCACCACGTGAGTATTAACAGGAACAACACGGGGCGAGGT
GCGGGCCACATCACTAGAGACCTCAGCAGTGGCCCTTCCTTATAGCTCAC
CAGGGGAGTACGTATATATACTTAATTCCAAGTAGTTGGTAGCGCCACCC
ACAAAAGCAGTCGAGCCCGATAACTATCTACTGATCGATGTATTCCATCA
CTGCTTCCTACGGTACAGTGACTTCTTGAATGGCATCTGCGAGGCGCAGT
CTCACGTGCGTGATATTGATTTGTGTGCTCGCTTCGGTGAATGCCTCCAA
GTATGTACTTCGAAGTATGTGTGTATACGAGTACGAAGTATATATGTACT
CACGTTGTGCTTGCCGTAGTCCCGAGACCGTTGACCACGCGCCTCGCTCA
AGACGGAGCAGTGTATACTGTTTGTACAAAGTATGTACGAGTACTCATTT
GCTTGTCTTGCGACATAACCTTGCGTGCACTCCCGGCAGCCTTGAGGCGA
AGATTCGGGTCGGCCCTCCGACAGAGGTAGTAGTACTGTAGGTACCGTAC
AGTATGCTCCACCCCGGCCCAGTAAGGACGCGAGGCCAATGGCCGAAAGG
CTACCCTGCGGGGGTATTACTGGCCGGCGGTCCAGCGAGTAGCTATACTG
TGCCGACGGTCGGTGGCATGCACAGAAGGGGGTGTAATATCAACCCTGCC
GGACGTGAGTAGGTACACGCGCAGTACGTAGCACTGTAGGAGTGCTCGTA
CAGTACCGTAGAGTACGGTACTGCATGTACTAGTACCTGTACCTGTACTC
GTGCTGTACAGTACCGTGCTTTGAGGCATGTATGTGCTGGTGTGGTGTGC
GCACCAGTGGCGCCAGGGCTGCACGCGCCGCGGATGCATCACGCACACAC
ACGCACATACACACACTCTTTCTCTCTCTCTCTCCCTCCCTCCTTCCCTC
TCCCTCTCCCTCTCCCTCTCCCTCTCTCTCTCCCCCCCCCTCTCTCTCTG
TGTCCGTGCCTACCCACTCATCCATGACCTGCCCGCCCGCCACCACCGCC
GCCGCCGTCACCACCACCGCCACTGCTGCTGCCACCGCCACCATCACCGC
CCTGGCCAGATTCGTCCCCGTGGAGCCGGGCGAGGAGGAGTCCGCAAGGG
ACCAGGCAATTGAGGACAGCTGGCTATCACGAGGCTAGCACTACACCTTT
GGAGGCGGTGCTTGCCCTCCGACCCCCGGGGGCCAGTCCCCGTGCAGCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:432794..434493+

>mRNA_S-ischiensis_contig8.19300.1 ID=mRNA_S-ischiensis_contig8.19300.1|Name=mRNA_S-ischiensis_contig8.19300.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=636bp|location=Sequence derived from alignment at S-ischiensis_contig8:432794..434493+ (Schizocladia ischiensis KU_0333)
ATGCCCTGGCCGCCATCGGACATCTTCGACGAGCACGGCAACCTCCGACC
GCGCAGGCGCCCGCCGCCGGTGAAGCTCGACCCCGCCGATGACAACGACG
CCCTCCTGGACGCCATCTATGAGCAGATCATGTCCGGCACTGAACACCAG
ATGCCCTGGCCGCCATCGGACATCTTCGACGAGCACGGCAACCTCCGACC
GCGCAGGCGCCCGCCGCCGGTGAAGCTCGACCCCGCCGATGACAACGACG
CCCTCCTGGACGCCATCTATGAGCAGATCATGTCCGGCACTGAACACCAG
CCTACATGCGACCCGGATATCATGGCCTCCGAGTCGGAGGACGGGGACTA
CGACGAGGACGGGTTGACCTGGCACTACTCAAGCACCACCCTACATGCGA
CCCGGATATCATGGCCTCCGAGTCGGAGGACGGGGACTACGACGAGGACG
GGTTGACCTGGCACTACTCAAGCACCACATTCGTCCCCGTGGAGCCGGGC
GAGGAGGAGTCCGCAAGGGACCAGGCAATTGAGGACAGCTGGCTATCACG
AGGCTAGATTCGTCCCCGTGGAGCCGGGCGAGGAGGAGTCCGCAAGGGAC
CAGGCAATTGAGGACAGCTGGCTATCACGAGGCTAG
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