mRNA_S-ischiensis_contig8.19253.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19253.1
Unique NamemRNA_S-ischiensis_contig8.19253.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:197407..198246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817254.7528222-CDS-S-ischiensis_contig8:197406..1975731622817254.7528222-CDS-S-ischiensis_contig8:197406..197573Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 197407..197573 -
1695740973.0372849-CDS-S-ischiensis_contig8:197406..1975731695740973.0372849-CDS-S-ischiensis_contig8:197406..197573Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 197407..197573 -
1622817254.7675238-CDS-S-ischiensis_contig8:198140..1982461622817254.7675238-CDS-S-ischiensis_contig8:198140..198246Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 198141..198246 -
1695740973.0578775-CDS-S-ischiensis_contig8:198140..1982461695740973.0578775-CDS-S-ischiensis_contig8:198140..198246Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 198141..198246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19253.1prot_S-ischiensis_contig8.19253.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 197407..198246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19253.1

>prot_S-ischiensis_contig8.19253.1 ID=prot_S-ischiensis_contig8.19253.1|Name=mRNA_S-ischiensis_contig8.19253.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=91bp
ADTAEGRALEVQRQLGSVLYVVVQIIERLLLPGDAAASAATDTDAMEALE
LLALLFSNAARLPGVFVSGLPDNGYALLSFMQHLLAGVVEA
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mRNA from alignment at S-ischiensis_contig8:197407..198246-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19253.1 ID=mRNA_S-ischiensis_contig8.19253.1|Name=mRNA_S-ischiensis_contig8.19253.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=840bp|location=Sequence derived from alignment at S-ischiensis_contig8:197407..198246- (Schizocladia ischiensis KU_0333)
GCGGATACGGCGGAGGGGCGGGCGCTTGAAGTGCAGCGGCAGCTGGGCTC
CGTGCTGTACGTGGTGGTGCAAATCATCGAGCGGCTCCTGCTGCCGGGGG
ATGCAGGTGACGGCGTCGTTTTAGGGGTGGGGTTGGGAGTGGGGACGGGC
TGTGTGTGGGGGTGTCGGGCGGGAGACGGCCGTCGACACCGACCTGTTGG
CGCTGGCACGGGCCTGTTATCCCTAGCAACTTCCTCAGGCGACGGTGGGG
GAGTTGGTAGCCCTCCTTGCCACAGTCGGGTCATTGCACGATGACCGTAA
GCCAACGATTGCGACGTTGACACCTGCCTGGCCCCTTGTGTGCAAGGCTC
CAGTACCGACGTGGTCTCGATGGCCGTGCTTCCTTAGAATGCCACTCCTC
CTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCC
CCCCCCCCCTTCCTGCCCATGCCCCCCCTCCTCGCCCCCCCCTTCGCCTT
AGACCTACGATTGCCCTAGCCTGACCGGCACGGGCGCAGTGGTTATTGCT
AATCGGCACGGCATCATTGGACCGTCGGATACCTATGTCAAGCGCCAATT
CACGTACCACATGTGACGAGAATCCTGGGGCCGCTACCCTCCCCCCCCCC
CCCCCGTCCAATCCTTCCCGCAGCCGCCTCGGCGGCGACGGACACGGACG
CCATGGAGGCCCTGGAGCTGCTGGCGCTCCTCTTCTCCAACGCTGCACGC
CTGCCAGGGGTCTTCGTGTCCGGCCTGCCGGACAACGGGTACGCCCTCCT
GAGCTTCATGCAGCACCTCCTCGCCGGCGTCGTGGAGGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:197407..198246-

>mRNA_S-ischiensis_contig8.19253.1 ID=mRNA_S-ischiensis_contig8.19253.1|Name=mRNA_S-ischiensis_contig8.19253.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=546bp|location=Sequence derived from alignment at S-ischiensis_contig8:197407..198246- (Schizocladia ischiensis KU_0333)
GCGGATACGGCGGAGGGGCGGGCGCTTGAAGTGCAGCGGCAGCTGGGCTC
CGTGCTGTACGTGGTGGTGCAAATCATCGAGCGGCTCCTGCTGCCGGGGG
ATGCAGGCGGATACGGCGGAGGGGCGGGCGCTTGAAGTGCAGCGGCAGCT
GGGCTCCGTGCTGTACGTGGTGGTGCAAATCATCGAGCGGCTCCTGCTGC
CGGGGGATGCAGCCGCCTCGGCGGCGACGGACACGGACGCCATGGAGGCC
CTGGAGCTGCTGGCGCTCCTCTTCTCCAACGCTGCACGCCTGCCAGGGGT
CTTCGTGTCCGGCCTGCCGGACAACGGGTACGCCCTCCTGAGCTTCATGC
AGCACCTCCTCGCCGGCGTCGTGGAGGCGCCGCCTCGGCGGCGACGGACA
CGGACGCCATGGAGGCCCTGGAGCTGCTGGCGCTCCTCTTCTCCAACGCT
GCACGCCTGCCAGGGGTCTTCGTGTCCGGCCTGCCGGACAACGGGTACGC
CCTCCTGAGCTTCATGCAGCACCTCCTCGCCGGCGTCGTGGAGGCG
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