mRNA_S-ischiensis_contig106.1885.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig106.1885.1
Unique NamemRNA_S-ischiensis_contig106.1885.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig106.1885.1 vs. uniprot
Match: A0A6H5KVG3_9PHAE (HECT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVG3_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 4.170e-34
Identity = 83/179 (46.37%), Postives = 100/179 (55.87%), Query Frame = 1 
Query:   85 NITCADLLTCETCVGVFDVITEGPNGLECLWCS-----SSIASDASLCVDRSTEQHLCHTGALQDGCGDMVASYVLVLAFAAALCXXXGLALLRRFLAQWTVRQGWA-GAELTRPLLEE--EETSHEAVFRSSLVGEAGEACWRCPVCGFDNRPRSKACDLCGTSQEFAQAYAQEKDVT 597
            N TC+   TCE+CV  F     G   + CLWC+     S       LCV R   Q  C  G LQ  C +    YVLVL  +A L XXX   + R+F+A W  R   A G +L  PLL+   EE  HE +FRSSL   AG A WRCPVCGFDNRP  K CDLCG S EFA+AY ++K+ +
Sbjct:   17 NSTCSKFATCESCVDYF-----GQGDVGCLWCNVPKDESRSVVGGGLCVPRFGAQDSCEFGELQATCQEGAGWYVLVLTLSALLXXXXXXTMARKFVAMWHERWWLASGGDLAVPLLDXXXEEQQHEVIFRSSLTDSAGNASWRCPVCGFDNRPHCKHCDLCGMSSEFAEAYWKDKETS 190
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVG3_9PHAE4.170e-3446.37HECT domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:225919..230024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue2.8e-32
Seed eggNOG ortholog2880.D7FQJ4
KEGG koko:K04678,ko:K10591,ko:K10592,ko:K13305
KEGG Pathwayko04011,ko04120,ko04144,ko04340,ko04341,ko04350,ko04530,ko04960,ko05169,map04011,map04120,map04144,map04340,map04341,map04350,map04530,map04960,map05169
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0940@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size667
Cds size666
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1885.1prot_S-ischiensis_contig106.1885.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig106 225920..230024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.3093586-CDS-S-ischiensis_contig106:225919..2259461622815569.3093586-CDS-S-ischiensis_contig106:225919..225946Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 225920..225946 -
1695739776.072602-CDS-S-ischiensis_contig106:225919..2259461695739776.072602-CDS-S-ischiensis_contig106:225919..225946Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 225920..225946 -
1622815569.3215413-CDS-S-ischiensis_contig106:226427..2264961622815569.3215413-CDS-S-ischiensis_contig106:226427..226496Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 226428..226496 -
1695739776.082799-CDS-S-ischiensis_contig106:226427..2264961695739776.082799-CDS-S-ischiensis_contig106:226427..226496Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 226428..226496 -
1622815569.3332312-CDS-S-ischiensis_contig106:226960..2270891622815569.3332312-CDS-S-ischiensis_contig106:226960..227089Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 226961..227089 -
1695739776.091316-CDS-S-ischiensis_contig106:226960..2270891695739776.091316-CDS-S-ischiensis_contig106:226960..227089Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 226961..227089 -
1622815569.3426452-CDS-S-ischiensis_contig106:228096..2282761622815569.3426452-CDS-S-ischiensis_contig106:228096..228276Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 228097..228276 -
1695739776.1001182-CDS-S-ischiensis_contig106:228096..2282761695739776.1001182-CDS-S-ischiensis_contig106:228096..228276Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 228097..228276 -
1622815569.3521597-CDS-S-ischiensis_contig106:229763..2300241622815569.3521597-CDS-S-ischiensis_contig106:229763..230024Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 229764..230024 -
1695739776.1093307-CDS-S-ischiensis_contig106:229763..2300241695739776.1093307-CDS-S-ischiensis_contig106:229763..230024Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 229764..230024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig106.1885.1

>prot_S-ischiensis_contig106.1885.1 ID=prot_S-ischiensis_contig106.1885.1|Name=mRNA_S-ischiensis_contig106.1885.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=222bp
RPRSLSQSAGPSARHRPPTMLGGDAGGENITCADLLTCETCVGVFDVITE
GPNGLECLWCSSSIASDASLCVDRSTEQHLCHTGALQDGCGDMVASYVLV
LAFAAALCCCCGLALLRRFLAQWTVRQGWAGAELTRPLLEEEETSHEAVF
RSSLVGEAGEACWRCPVCGFDNRPRSKACDLCGTSQEFAQAYAQEKDVTA
HGTRLHNVSGAAKEEAPRDGGG
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mRNA from alignment at S-ischiensis_contig106:225919..230024-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig106.1885.1 ID=mRNA_S-ischiensis_contig106.1885.1|Name=mRNA_S-ischiensis_contig106.1885.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4106bp|location=Sequence derived from alignment at S-ischiensis_contig106:225919..230024- (Schizocladia ischiensis KU_0333)
CGACCTCGGAGCTTGTCGCAGTCGGCAGGTCCGAGCGCACGACACCGACC
TCCCACGATGTTGGGAGGTGACGCAGGCGGTGAAAACATCACTTGCGCGG
ACCTCTTGACATGTGAGACATGCGTTGGAGTTTTTGACGTCATCACGGAG
GGGCCCAACGGGCTAGAATGCCTTTGGTGCTCTTCATCAATCGCCTCTGA
CGCAAGCCTATGCGTGGACCGGTCGACGGAGCAGCACCTCTGCCACACCG
GGGCGCTTCAGGTAAGCAGGGACGGCACATTCAGTAGCCGCATGCTGGTA
AATATCAGGAAGGAGCCTCCAGAACCGCCGATGCCCGTACTAGTCGGCCA
AAGGGGCCCCATCGGCCAAGAAGGGCTGCTGAGTGCATGCTTGCATGCTA
GGTGCACCTGAATAGTCAATCACGAGATCCTGCAGCCACATGGGCTATTG
TCTCAGGTATGTACCCGTGGGGTGGCTGACGCACCCCAAACCGGTACGGC
TTAGGACAAGCATGGGAGTGAGTGTGTACTCGTACTTCGTACAGTAGTGA
CCCGCTCTAACGGTACTTCTGCTTGAAAGTGCAGCACCATCGTCCTGTAT
GGAAGTATGACTGCAGGTTAGTACTTCCCAGCATTGGCGTGGAAGAGGCG
TGCGCGGCCTCCACAGGACAACATCGCCTGCACACAGCACCATTCCCTCG
GCGATGCCGCCCCCTGTGGGAGCTGCCGCCCGTGCACAGCGGGGACACTC
TTAGCAGACGGAGGAACCATTCCCGCGAGCGTCGGAGCTGACATGGATTC
ATCCCGGGTCCTTCTCTTTCGGCTGCCCGAGAACCTTGTTTGTCAGTATT
CCGTCTCGTGCATTGGCACTGGCATGCGCCCCACTGGCGCTTCTAGGGTT
CCGACTGCTTCCACTAGGCATGTACTTCGAAGTACTCGTGAGTACTGTAC
TTGGAGTACTCGAGTGCTGCAGTAAGCTTACCCGCCGTTTGGTAAGAACG
GTGCACTGCGTCGTTGATACCTTAGAGGATGACGACACACTGCTACGTTT
GGCACTGGTCTCGATGTGTTTTCATGTGCACCGTGGCCGTACAGTACTAT
AGTGGGCCAATGACGCAAGGTCAAGCGCGTGGCCAATGGTCTCCACAGCC
TACCGTACAAAGACGAGCGCAATGCGGGTGCATTTCTACGCTGCAGTTGC
CGCGAGCGCTCTTGCTGCGACGCGCTTCCGGGCGATGAAAACTCGGGGAC
GATACGATGAGGGCGTGGTCGAAGGTCTCGACACCCCCGCCCCGCGTGCT
TCAAGTACTTACGCAGTACTTGCAAGTACGTTGTACTGCCCAAGTAATTA
CCTCGAAGAAGTTTGAAGTACCGCAGGTAGCATAATAGGGCAACCGCAGC
GTGGGCGCCGAGCAGCACATTTTGCGCACGCCGCGCTTGCCGTAGCCCAG
GCACCGCCTAGCGGTCGCGCTGTTTCTAAATGGTTCATCGGTTGGGATGC
GAGAGAGTCCGTGGCTACTAGTAGTACTATGTAGTATATAGCTGCTCCTG
TCGGAGCTCAAACCCGAAGTTTAACTTCGGGCGGTCGACTAAGCACGCGA
GGTTTCGTCGCAAGACAAGCCATTGGGTGCATATATGTATATTAGTATAT
ATATGTACTCACGTTGTGCTTGCCGTAGTCCTGGGACCATTGAGTACATA
TATGTGCAAGCATCTATATATATCCCCCGCCCCCCCCCCTTTTGCCAGGA
TGGGTGCGGCGATATGGTGGCATCGTACGTGCTGGTGCTGGCCTTTGCGG
CGGCCCTCTGCTGCTGCTGCGGCCTTGCCCTGCTGCGGCGCTTCCTCGCG
CAGTGGACGGTACGGCAGGGATGGGCGGGCGCCGAGCTGACACGCCCCTT
GCTCGAGGAGGAGGAGACTTCTCACGAGGTGTGCGTGTGTGTGTGCGTGT
GTGCGCAATGTGTGTCCTACAGTAACGGTGGGTGCGCTGAACCTGTGGAT
GAGAGAAGTGCGGTGCTTGCCGGTACGCCGAGGTGACTCCTCGCTGCTTA
GGTACTGCAGCAACGTCCTACTTGCAAGTATTCTACTGATGTGTAAGTGC
CTTGGGCCGGTCAGGGTTAAGCTAGTCCATCTTTGGAATCATTTGGCATT
GCGCGAGTTTTTGTGCCCTCTACCCCTACCGCACAGACGGTTGGTTGAAC
TCAGCAGGTGAGCACTTCGGGTGCCCGGTGGAGGATAGAAAAGAAACGAG
TAGGAGAGGGAGGTTTGCCTACTTTTGCGAGTTTGTTTTTTTACTCCACG
TGATAAGAATGCTATGGCCTGTAGCAAAAGAGTGTACTCGTACCAGTGCA
TCCGGCTTCCCCCGGCCCTGGCACCCCGGACCCCACGACGCTCTCCCTTT
GTGCCCCCCACCTGGGGCTGGCCATCAAATCAAACGCGTTTTTGGGTTTC
AATTGATGCTGTGATACTTCGGCGTCGACATCGTTTCGACCTTTTTTATA
CACTTGCCGGCTACATCTTGCCAGGTATGCTTTGGCCGATAAAATACCGG
TTAGACTTGGCGGTAAAACGGCAAGTCCGATCCCTGCCACGGCTGGCTAT
GGGGCCGTCCCAAAGTGCCACCGATTTGACCTGGGGCAGAACTTGAAACC
GGACACATTGTTTTTTTCAAATATGTAATAGTGCCGCTCCGTCTCGACCG
AGGCGCGTGGTCAATTCTCTCGGGACTACGGCAAGACCACGTGAGTACAT
ACATACGTGTAGCATATATACTTCGAAGTATAGTGGATGGGGGTCATTTC
AGGCTTCTATCTTCTATCTTCGATATTTGGTATTATCAGATTCGATCGCC
AGCGCTAATGTACGTCTTGCTGACCGCACACGCCCGCTGCCCGGCCCGGC
CCTCCGGCCCACCGCCCTGCCGAAAACTTGGGCAGGCGGTGTTCCGCAGC
AGCCTGGTGGGGGAGGCGGGGGAGGCGTGCTGGCGCTGCCCCGTGTGCGG
CTTCGACAACCGCCCCCGCTCCAAGGCGTGTGACCTGTGCGGCACCAGCC
AGGAGTTCGCCCAGGTGGGGAGGGAAGGGGGCCGGCAGGCGTTGTCTTCT
TCTTCCTGGTGGTGTGCTCTGGTTGGGCTGTTTCTTGTATCTTTTTGAGC
CCTGGCGACTGACTGCTGTTTCTTTCTTTCGTTCTTTTTATTTTTGTTTT
TTTCGACACGCTACTTGACTCGTGCGCGAGTGCCGGGCCCCGACGGCGGA
AGCTCTCCCTTGTCGCTTGCAGCTGTGTGCCTTCCCTTCCTTGACGCTTA
GTGACTCGGCCCCCACCAGGGCCTGTGTTGTCCCCGCGAACAGTGTATAT
TTGACTACTCGCAATCGTACGCATCACAGCACATCACATCACATCAGAAT
GCCCCCATCCCCTAAAGGATGACCGCGCCTGGCCCCGCGCTGCCCCCACA
CCCGCTCGCTGCCCGCCCCACCTCGGCGGCGCCGGCGCCGGCGGCGATAT
TCCCCGTGTCCCGTTCTTCTGTCGCCAGGCTTACGCGCAGGAGAAGGATG
TGACCGCCCATGGGACGCGCTTACACAATGTCAGCGGGGCCGCCAAGGTG
AGGTTCGGGTTCGCTTGCACTCTACTAAGGAAGGGCCACTGTTGAGGTCT
CTAGTGATGTGGCCTGCACCTTGCCCTGTGTTGTTATTATCCTGTTAATA
CTTAGTACGTGAGTGAGAGTGAAGTCTCCCGCGCCGTGAGATTGTCCAAG
CCTTGTCGAACAATCTCAATGCCTGGGTCCCGGTCGAACCAAGTATCCGT
AGCATCTGCGATTGCGCCGTCGTCAACGGCGCGCGGTCAATGGTCTCGGG
ACTACTGCAAGCACAGTACGAGCATATATATATACATACTCGAGTATGTA
TACATACAGGTACAATCCCGAAGTTTGGATGTACAGTACTACTGTACAGT
AGCGCTAGAGAAGATGCACCCCTGAGGCTATTGTACGACTACAGTACTTG
GAGTGCTCAACTACATGCAAACGCACACGCACCCCCCCCGCCCGCCTCGC
TGTCCTGCCCATCTCTTGCCAATGCCAGGAGGAGGCACCGCGGGACGGCG
GCGGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig106:225919..230024-

>mRNA_S-ischiensis_contig106.1885.1 ID=mRNA_S-ischiensis_contig106.1885.1|Name=mRNA_S-ischiensis_contig106.1885.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1332bp|location=Sequence derived from alignment at S-ischiensis_contig106:225919..230024- (Schizocladia ischiensis KU_0333)
CGACCTCGGAGCTTGTCGCAGTCGGCAGGTCCGAGCGCACGACACCGACC
TCCCACGATGTTGGGAGGTGACGCAGGCGGTGAAAACATCACTTGCGCGG
ACCTCTTGACATGTGAGACATGCGTTGGAGTTTTTGACGTCATCACGGAG
GGGCCCAACGGGCTAGAATGCCTTTGGTGCTCTTCATCAATCGCCTCTGA
CGCAAGCCTATGCGTGGACCGGTCGACGGAGCAGCACCTCTGCCACACCG
GGGCGCTTCAGCGACCTCGGAGCTTGTCGCAGTCGGCAGGTCCGAGCGCA
CGACACCGACCTCCCACGATGTTGGGAGGTGACGCAGGCGGTGAAAACAT
CACTTGCGCGGACCTCTTGACATGTGAGACATGCGTTGGAGTTTTTGACG
TCATCACGGAGGGGCCCAACGGGCTAGAATGCCTTTGGTGCTCTTCATCA
ATCGCCTCTGACGCAAGCCTATGCGTGGACCGGTCGACGGAGCAGCACCT
CTGCCACACCGGGGCGCTTCAGGATGGGTGCGGCGATATGGTGGCATCGT
ACGTGCTGGTGCTGGCCTTTGCGGCGGCCCTCTGCTGCTGCTGCGGCCTT
GCCCTGCTGCGGCGCTTCCTCGCGCAGTGGACGGTACGGCAGGGATGGGC
GGGCGCCGAGCTGACACGCCCCTTGCTCGAGGAGGAGGAGACTTCTCACG
AGGATGGGTGCGGCGATATGGTGGCATCGTACGTGCTGGTGCTGGCCTTT
GCGGCGGCCCTCTGCTGCTGCTGCGGCCTTGCCCTGCTGCGGCGCTTCCT
CGCGCAGTGGACGGTACGGCAGGGATGGGCGGGCGCCGAGCTGACACGCC
CCTTGCTCGAGGAGGAGGAGACTTCTCACGAGGCGGTGTTCCGCAGCAGC
CTGGTGGGGGAGGCGGGGGAGGCGTGCTGGCGCTGCCCCGTGTGCGGCTT
CGACAACCGCCCCCGCTCCAAGGCGTGTGACCTGTGCGGCACCAGCCAGG
AGTTCGCCCAGGCGGTGTTCCGCAGCAGCCTGGTGGGGGAGGCGGGGGAG
GCGTGCTGGCGCTGCCCCGTGTGCGGCTTCGACAACCGCCCCCGCTCCAA
GGCGTGTGACCTGTGCGGCACCAGCCAGGAGTTCGCCCAGGCTTACGCGC
AGGAGAAGGATGTGACCGCCCATGGGACGCGCTTACACAATGTCAGCGGG
GCCGCCAAGGCTTACGCGCAGGAGAAGGATGTGACCGCCCATGGGACGCG
CTTACACAATGTCAGCGGGGCCGCCAAGGAGGAGGCACCGCGGGACGGCG
GCGGCGAGGAGGCACCGCGGGACGGCGGCGGC
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