mRNA_S-ischiensis_contig75.18865.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig75.18865.1
Unique NamemRNA_S-ischiensis_contig75.18865.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig75.18865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig75contigS-ischiensis_contig75:370682..372600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size182
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.7234995-CDS-S-ischiensis_contig75:370681..3707411622817217.7234995-CDS-S-ischiensis_contig75:370681..370741Schizocladia ischiensis KU_0333CDSS-ischiensis_contig75 370682..370741 +
1695740944.0622761-CDS-S-ischiensis_contig75:370681..3707411695740944.0622761-CDS-S-ischiensis_contig75:370681..370741Schizocladia ischiensis KU_0333CDSS-ischiensis_contig75 370682..370741 +
1622817217.7363539-CDS-S-ischiensis_contig75:372479..3725991622817217.7363539-CDS-S-ischiensis_contig75:372479..372599Schizocladia ischiensis KU_0333CDSS-ischiensis_contig75 372480..372599 +
1695740944.0753708-CDS-S-ischiensis_contig75:372479..3725991695740944.0753708-CDS-S-ischiensis_contig75:372479..372599Schizocladia ischiensis KU_0333CDSS-ischiensis_contig75 372480..372599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig75.18865.1prot_S-ischiensis_contig75.18865.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig75 370682..372599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig75.18865.1

>prot_S-ischiensis_contig75.18865.1 ID=prot_S-ischiensis_contig75.18865.1|Name=mRNA_S-ischiensis_contig75.18865.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=60bp
VEPQAVQAQLDKGKRVLRVRVRFSTSAAGPHHPADTARERRQAEDERAGV
GAGAPAAVAL
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mRNA from alignment at S-ischiensis_contig75:370682..372600+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig75.18865.1 ID=mRNA_S-ischiensis_contig75.18865.1|Name=mRNA_S-ischiensis_contig75.18865.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1919bp|location=Sequence derived from alignment at S-ischiensis_contig75:370682..372600+ (Schizocladia ischiensis KU_0333)
GTGGAGCCGCAGGCGGTGCAGGCACAGCTGGACAAGGGGAAAAGGGTGCT
GCGCGTCAGGGTGAGGAGGAGGCGTTTTTAGAGGTTTGAGGATGACGTGA
TACTGATGTGATGTCATGTGATGTCAAACTACTCTAGGATAGAGTACCCA
TCACATCACGTCACATCACATCATACTACATAGTACTTCGAAGTACTACA
GTATTGTACAATGCGACCCAAGGGGGAAAGGGTGCTGCGCCTCAGGGTGA
GGAGGAGGAGGCGTGTTTAGAGGTTTGAGGACGACGGGATAGTGATGTGA
TGGGATGTGATGTGATGTCAAACTACAGACATTTAGAGCACGTATCACGT
CGCACGGTGCAGGCGCAGTTGGACGAGGGGAAAAAGGTGCTGCTCCTCAG
GATGGGCCCACAAGACGGCCCTATCTGGGACCCTAGAAACAAAGCACACT
TCGGACGACAGGCCTCAACGGAACTTGAAGAGAAACAGGTTAAATATATG
CTCGTACTGCTATTGTAGTACATAGTGCCGAAATAAATGTCTGTATGCAG
AGGCGCTTTTAGTCCTTTGAGGGCGGCGGGACACTACTGTGCTGTGATGT
GATATGATGTGATGCGATGGGGATATGATGTCAAACTGCAGGCACAGTTG
GGCCAGGGGAAGAGGGCGCTGCGCCTCAGGGTGAGCCAACAAAACGGCCC
TATCTGGGACCCTAAAAACAAAGCACACTTCCGGACAACACAGCTATACA
TCTACTCGTTCGTATGTGGTCATGCTCACGTTGTGCTTGCCATAGTCCCG
AGACCATTGACCACGCGCCTCGGTCGAGACGGAGCAGCGACACCAACCTC
TAAGCGGACGGCAGGACACTTGAACGCTATTTGGTGATTCGGAACCACAG
TACACTTACTGTAGAATACACATCACATCCCATTGTGCTACTGCACAGTA
GCGTGGGCACCCGAGGGTTAAACATGGCACTAGCCCCCAACTCTCTCGAC
GAATGAGAGCGGTGGACAACGTGGATGTGATGTCCAACTACTGAACACAT
CTAGTGTTGTGTCAAACTACAGTACACTAGAGTACACATCACATCCCATC
GTACTACAACTGCACAGTAGCGTCGGCGCCCGAGGGTTAAACATGGCACT
AGCCCCAACTCTCGACGAATGAGAGCTGCGGACTACAGTGACGTTACGTG
CGCTGCGCGCCCCGTCCCAGAACCTAAGGCGGGGACCTCGCCGGAAGAGT
TTACCCTTCTTTGGAGCTCTACACCGGTTTGTCGTTTCGATTGAAACTGT
TTTTTTTTTCTTTTTTTTTTTCTTTTTTCGGTGGACGGCGCCTAACGCCC
GCGACCACAGTGCACTTCTGCACCGGGCCGACAACGCCACGGGAAAGACA
CCCTTTACTAGATGTAATTAGGGGTTTTTGGACCTAAAATGGACGCTAAT
TAGGCTAATTGCTGTAGGCCGCTAAGTTCCACCCCTACTTTTCGGACCCC
AAGTGCGCTTCTTCACCGCGGCGGCGGGGCTCCACCACCCGGCCGACGTA
CCACGGGAAAGGTGCCAGGCCAATGAGGAGAGAGCGGTAATTAGGGGTAG
TTACAGTAGACCTAAAATGAAGGCCAACTACGCGCTAATCAGCCTCTAAG
TGCCAACCCTGGTCGGACCCCGGGTGCTCTTCTCCACCGCGGCGGCGGGG
CTCCACCCAGTTGGGGGTAATGAGACCTAAAATGAAGGCCAGTTTGGTGG
TCCTAATTAGCCTCTAAGTGCAACCCAACCCTGCTTTTCGGACCCCAGGT
GCGGTTCTCCACCTCGGCGGCGGGGCCCCACCACCCGGCTGACACAGCAC
GGGAAAGGCGCCAAGCTGAGGATGAGAGAGCGGGAGTGGGGGCAGGAGCG
CCGGCGGCAGTGGCGCTGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig75:370682..372600+

>mRNA_S-ischiensis_contig75.18865.1 ID=mRNA_S-ischiensis_contig75.18865.1|Name=mRNA_S-ischiensis_contig75.18865.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=360bp|location=Sequence derived from alignment at S-ischiensis_contig75:370682..372600+ (Schizocladia ischiensis KU_0333)
GTGGAGCCGCAGGCGGTGCAGGCACAGCTGGACAAGGGGAAAAGGGTGCT
GCGCGTCAGGGTGGAGCCGCAGGCGGTGCAGGCACAGCTGGACAAGGGGA
AAAGGGTGCTGCGCGTCAGGGTGCGGTTCTCCACCTCGGCGGCGGGGCCC
CACCACCCGGCTGACACAGCACGGGAAAGGCGCCAAGCTGAGGATGAGAG
AGCGGGAGTGGGGGCAGGAGCGCCGGCGGCAGTGGCGCTGGTGCGGTTCT
CCACCTCGGCGGCGGGGCCCCACCACCCGGCTGACACAGCACGGGAAAGG
CGCCAAGCTGAGGATGAGAGAGCGGGAGTGGGGGCAGGAGCGCCGGCGGC
AGTGGCGCTG
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