mRNA_S-ischiensis_contig106.1879.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig106.1879.1
Unique NamemRNA_S-ischiensis_contig106.1879.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: D8LFT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFT4_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 2.230e-35
Identity = 70/135 (51.85%), Postives = 87/135 (64.44%), Query Frame = 2
Query:  206 KPKMTKEERREKYTKRAADLREKERMKTVYAKKL-CLGCRKWGHVLASCPTATKGPVGICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKCPEAPAQD 607
            KPKMTKEERR KYT++A + REK+      A K  CLGCR WGH++A+CP A K   GIC+NCGS +HAL  CP P++KDGSLP+A               ++N  GVYPKGG CK C S+ HL+  CPE+   D
Sbjct:   64 KPKMTKEERRAKYTQKAYEAREKQNQLGPGANKTRCLGCRAWGHIVANCPEA-KAATGICFNCGSAKHALRVCPAPKQKDGSLPYATCFICKAKGHISAHCKQNANGVYPKGGFCKWCGSKHHLSWDCPESTKVD 197          
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: A0A835ZFQ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 6.290e-22
Identity = 98/223 (43.95%), Postives = 110/223 (49.33%), Query Frame = 2
Query:   23 VCYVNPSKASTMSKKERRRLTKKLKKEALGHGKSHAPVKEGKKARKAHHGQDMGERPPKEKKPKMTKEERREKYTKRAADLREKERMKTVY----------------------------AKKL-CLGCRKWGHVLASCPTATKGPVGI-CYNCGSTEHALGKCPKPRR---KDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKCPE 592
            VCY+     ST+SK ERRRLTK                 E KKA KA      GE P K  KP +TKE+RRE++T  A   RE                                    A KL CLGCR  GH++  C  AT     + CY CGSTEH L  CP+  R   K      A XXXXXXXXXXXXXX +N RG+YPKGG CKIC S RHLAS CPE
Sbjct:   12 VCYLKGVDVSTLSKSERRRLTK-----------------EAKKALKAKQVA-KGEAPQKASKPTITKEQRRERFTAIAKKRREXXXXXXXXXGVIKSGARGGAGRDDGGNRATGDAEGAANKLYCLGCRGKGHLIKDCKKATARAASVVCYRCGSTEHTLKGCPEEARARDKRAVTTFATXXXXXXXXXXXXXXXQNARGIYPKGGCCKICESVRHLASDCPE 216          
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: YL92_SCHPO (Uncharacterized protein C683.02c n=2 Tax=Schizosaccharomyces pombe TaxID=4896 RepID=YL92_SCHPO)

HSP 1 Score: 86.7 bits (213), Expect = 6.450e-17
Identity = 46/126 (36.51%), Postives = 61/126 (48.41%), Query Frame = 2
Query:  236 EKYTKRAADLREKERMKTVYAKKLCLGCRKWGHVLASCPTATKGPVGICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKCPEAPAQDAA 613
            E+  K+ ++ R   R+      K C  CR+ GH++  CP A K  V IC+ CGS EH+L  C     K G L  A               E+N +G+YPKGG CK CSS  HLA  C +    D +
Sbjct:   55 ERQKKKRSEYRRLRRINQRNRDKFCFACRQQGHIVQDCPEA-KDNVSICFRCGSKEHSLNAC----SKKGPLKFAKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175          
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: A0A1U7LTQ7_NEOID (Zinc finger CCHC domain-containing protein 9 n=1 Tax=Neolecta irregularis (strain DAH-3) TaxID=1198029 RepID=A0A1U7LTQ7_NEOID)

HSP 1 Score: 85.9 bits (211), Expect = 8.820e-17
Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 2
Query:  308 CLGCRKWGHVLASCPTATKGPVGICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKCPEAPAQ 604
            C  CR  GH+ + CP A++G  GICY CGST+HAL +C   +RK  SLP+A XXXXXXXXXXXXXX +N++G YP GG C IC    HL  +C + PA+
Sbjct:   62 CFVCRAPGHLASECPLASEGQSGICYKCGSTQHALREC---KRKVKSLPYAKXXXXXXXXXXXXXXXQNDKGKYPNGGGCGICGGISHLKDQC-KKPAE 156          
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: A0A0F7UK68_NEOCL (Poly-zinc finger protein 1, related n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=A0A0F7UK68_NEOCL)

HSP 1 Score: 89.0 bits (219), Expect = 1.440e-16
Identity = 60/122 (49.18%), Postives = 73/122 (59.84%), Query Frame = 2
Query:  302 KLCLGCRKWGHVLASCPTATK-------------------GPV--GICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKCPEAPAQ 604
            K+CL CRK GH+L +CP A                     GPV  GIC+NCG+T+H L  C K R+ DG+LP A+XXXXXXXXXXXXXX ++  G YP+GG C  C S  HL  +CPE   Q
Sbjct:  293 KICLRCRKKGHLLENCPLAQSSATGSSAAENDTTQSDAKSGPVMSGICFNCGATDHTLKNCKKKRKPDGALPFALXXXXXXXXXXXXXXPKSTTGKYPQGGSCHTCGSIYHLQIECPEFQRQ 414          
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: A0A2H9TNT6_9FUNG (CCHC-type domain-containing protein n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TNT6_9FUNG)

HSP 1 Score: 87.4 bits (215), Expect = 5.990e-16
Identity = 44/104 (42.31%), Postives = 57/104 (54.81%), Query Frame = 2
Query:  278 RMKTVY-AKKLCLGCRKWGHVLASCPTATKGPVGICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKC 586
            R  TV+ +K +CL CRK GH +  CP    G   ICYNCGS  H L  C +PR  +  LP+A                +NERG+YP+GG C+ C S++HLA  C
Sbjct:   41 RSSTVHRSKPVCLKCRKRGHSVKYCPA---GASSICYNCGSHTHTLKACRQPRSNE--LPYASCYVCGGTGHLAGQCPKNERGIYPRGGGCRFCGSKQHLARDC 139          
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: A0A6P5WDE5_9EIME (zinc finger CCHC domain-containing protein 9 n=2 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A6P5WDE5_9EIME)

HSP 1 Score: 84.0 bits (206), Expect = 5.090e-15
Identity = 54/124 (43.55%), Postives = 69/124 (55.65%), Query Frame = 2
Query:  260 DLREKERMKTVYAKKLCLGCRKWGHVLASCPTATK-------GPVGICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKCPEAPAQDA 610
            D  E++      +KK+CL CRK GH+L  C               GIC+NCGS  H L  C KPR +DG+LP   XXXXXXXXXX     +++ G YPKGG C+ C S  HL ++C    +Q A
Sbjct:  216 DAHEEDPRSNKRSKKICLRCRKRGHLLHECRQGVSQAQAEGAATSGICFNCGSHNHTLKNCKKPRAEDGALPFXXXXXXXXXXXXSSQCPQSKTGKYPKGGCCRTCGSIYHLQAECAAFLSQKA 339          
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: A0A0C2XNF4_9AGAM (Uncharacterized protein n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C2XNF4_9AGAM)

HSP 1 Score: 78.2 bits (191), Expect = 1.650e-13
Identity = 39/102 (38.24%), Postives = 51/102 (50.00%), Query Frame = 2
Query:  254 AADLREKERMKTVYAKKLCLGCRKWGHVLASCPT------ATKGPVGICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGG 541
            A++ R + R++       C  CR+ GH    CPT       +K  +GICY CGS+ H L KC KPR + GSLP A                +NE+GVYP GG
Sbjct:   71 ASETRRQRRIQDRMMATTCFACRQRGHAAKDCPTNQGGGNKSKAGIGICYRCGSSNHTLSKCRKPRDEAGSLPFASCFVCKGTGHLASTCPQNEKGVYPNGG 172          
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: A0A1Z5JJ88_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJ88_FISSO)

HSP 1 Score: 75.1 bits (183), Expect = 6.800e-13
Identity = 42/127 (33.07%), Postives = 57/127 (44.88%), Query Frame = 2
Query:  212 KMTKEERREKYTKRAADLREKERMKTVYAKKLCLGCRKWGHVLASCPTATKGPVGICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKCPE 592
            K+TKEERR KYTK A D ++KER +   ++  C  CRK GH LA CP   +                       + D  LP A                +N +G+Y  GG C++C S  H A+ CP+
Sbjct:   11 KITKEERRAKYTKIARDRKQKERTRLKESQTTCFHCRKHGHSLAQCPDKPQSVQLXXXXXXXXXXXXXXXKMKDKNDSDLPFAKCFVCHKEGHLSRQCPQNTKGIYVNGGSCRLCGSTEHRATDCPD 137          
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: F0VPW8_NEOCL (Poly-zinc finger protein 1, related n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VPW8_NEOCL)

HSP 1 Score: 72.4 bits (176), Expect = 2.200e-11
Identity = 56/122 (45.90%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  302 KLCLGCRKWGHVLASCPTATK-------------------GPV--GICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKCPEAPAQ 604
            K+CL CRK GH+L +CP A                     GPV  GIC+NCG+T+H L  C K R+ DG+LP A+XXXXXXXXXXXXXX ++  G       C  C S  HL  +CPE   Q
Sbjct:   85 KICLRCRKKGHLLENCPLAQSSATGSSAAENDTTQSDAKSGPVMSGICFNCGATDHTLKNCKKKRKPDGALPFALXXXXXXXXXXXXXXPKSTTG------SCHTCGSIYHLQIECPEFQRQ 200          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFT4_ECTSI2.230e-3551.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZFQ1_9STRA6.290e-2243.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
YL92_SCHPO6.450e-1736.51Uncharacterized protein C683.02c n=2 Tax=Schizosac... [more]
A0A1U7LTQ7_NEOID8.820e-1755.56Zinc finger CCHC domain-containing protein 9 n=1 T... [more]
A0A0F7UK68_NEOCL1.440e-1649.18Poly-zinc finger protein 1, related n=1 Tax=Neospo... [more]
A0A2H9TNT6_9FUNG5.990e-1642.31CCHC-type domain-containing protein n=1 Tax=Parami... [more]
A0A6P5WDE5_9EIME5.090e-1543.55zinc finger CCHC domain-containing protein 9 n=2 T... [more]
A0A0C2XNF4_9AGAM1.650e-1338.24Uncharacterized protein n=1 Tax=Serendipita vermif... [more]
A0A1Z5JJ88_FISSO6.800e-1333.07Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
F0VPW8_NEOCL2.200e-1145.90Poly-zinc finger protein 1, related n=1 Tax=Neospo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:166508..170125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue4.6e-31
Seed eggNOG ortholog2880.D8LFT4
Preferred nameZCCHC9
KEGG koko:K05765,ko:K17578
KEGG Pathwayko04360,ko04666,ko04810,ko05133,map04360,map04666,map04810,map05133
GOsGO:0008150,GO:0009892,GO:0010563,GO:0010921,GO:0010923,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0035303,GO:0035305,GO:0043086,GO:0044092,GO:0045936,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051336,GO:0051346,GO:0065007,GO:0065009
EggNOG free text desc.zinc ion binding
EggNOG OGsCOG5082@1,KOG4400@2759
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, CCHC-type
Ec32 orthologEc-01_001010.1
Exons5
Model size769
Cds size759
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1879.1prot_S-ischiensis_contig106.1879.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig106 166518..170125 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.5053437-UTR-S-ischiensis_contig106:166507..1665171622815568.5053437-UTR-S-ischiensis_contig106:166507..166517Schizocladia ischiensis KU_0333UTRS-ischiensis_contig106 166508..166517 +
1695739775.5650282-UTR-S-ischiensis_contig106:166507..1665171695739775.5650282-UTR-S-ischiensis_contig106:166507..166517Schizocladia ischiensis KU_0333UTRS-ischiensis_contig106 166508..166517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.5158103-CDS-S-ischiensis_contig106:166517..1665851622815568.5158103-CDS-S-ischiensis_contig106:166517..166585Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 166518..166585 +
1695739775.579225-CDS-S-ischiensis_contig106:166517..1665851695739775.579225-CDS-S-ischiensis_contig106:166517..166585Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 166518..166585 +
1622815568.5253189-CDS-S-ischiensis_contig106:167101..1672751622815568.5253189-CDS-S-ischiensis_contig106:167101..167275Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 167102..167275 +
1695739775.5924573-CDS-S-ischiensis_contig106:167101..1672751695739775.5924573-CDS-S-ischiensis_contig106:167101..167275Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 167102..167275 +
1622815568.5348036-CDS-S-ischiensis_contig106:167768..1678801622815568.5348036-CDS-S-ischiensis_contig106:167768..167880Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 167769..167880 +
1695739775.603555-CDS-S-ischiensis_contig106:167768..1678801695739775.603555-CDS-S-ischiensis_contig106:167768..167880Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 167769..167880 +
1622815568.5452843-CDS-S-ischiensis_contig106:168595..1687811622815568.5452843-CDS-S-ischiensis_contig106:168595..168781Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 168596..168781 +
1695739775.611608-CDS-S-ischiensis_contig106:168595..1687811695739775.611608-CDS-S-ischiensis_contig106:168595..168781Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 168596..168781 +
1622815568.5590804-CDS-S-ischiensis_contig106:169906..1701251622815568.5590804-CDS-S-ischiensis_contig106:169906..170125Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 169907..170125 +
1695739775.619176-CDS-S-ischiensis_contig106:169906..1701251695739775.619176-CDS-S-ischiensis_contig106:169906..170125Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 169907..170125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig106.1879.1

>prot_S-ischiensis_contig106.1879.1 ID=prot_S-ischiensis_contig106.1879.1|Name=mRNA_S-ischiensis_contig106.1879.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=253bp
MEEKVCYVNPSKASTMSKKERRRLTKKLKKEALGHGKSHAPVKEGKKARK
AHHGQDMGERPPKEKKPKMTKEERREKYTKRAADLREKERMKTVYAKKLC
LGCRKWGHVLASCPTATKGPVGICYNCGSTEHALGKCPKPRRKDGSLPHA
MCFVCGGEGHLSGQCERNERGVYPKGGQCKICSSRRHLASKCPEAPAQDA
AAAAAGASSAGGGAQASKAAGSHGAASAGTSKETARKRKRGAKAGIGDED
EED
back to top

mRNA from alignment at S-ischiensis_contig106:166508..170125+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig106.1879.1 ID=mRNA_S-ischiensis_contig106.1879.1|Name=mRNA_S-ischiensis_contig106.1879.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3618bp|location=Sequence derived from alignment at S-ischiensis_contig106:166508..170125+ (Schizocladia ischiensis KU_0333)
GCGGCTGAAAATGGAGGAGAAGGTGTGCTATGTGAATCCCTCCAAGGCCT CCACCATGTCTAAGAAAGAACGTCGAAGGTGCGGAGACCCCACGAGGCTT TACGAAATGCGGCGCACCGCCTTTTCTAAGTTTTTTTACTGCTCCAATGT GCGCCTGCTATACTCGACGGGCGTAAAAACCGTCGTGTACTGCAGTAGAC TTGCCGGCATGGGTCATGCGACAATGTGCAGAATTAAGGAGTGTTGTCTA CTCCTTTATGCAGCAGACACGTCAGCCCTTCTCTGTAGCCCAGCCGTGCA CCACGATAGTGGGACAGTGTCGTGTAACTTACCCTTCCCTAGCGCAACGA ATGCAGAGGAATGACACTGAACAACAGGAAATTAGCATGGAATCAGTGTA CGTACCGTCTTCCTCTACAAGCAATGGATAACAATGTGGTGTCTTTGCCG GGAACCTCCATCAGGCTGACCAAAAAACTCAAGGAGGAATGACACTCAGC AACAGGAACTTACTGTAGCATGAAATCAGTGTACCGTCTTCCACTACACC TGAGGGTTAACAATGTTTTGTCGTTGCCTTTGAAACTCCCTCAGGCTGAC AAAAAAACTCAAGAAGGAGGCCCTGGGGCACGGGAAAAGCCATGCCCCTG TCAAGGAAGGGAAGAAGGCCCGCAAGGCCCACCACGGCCAAGACATGGGG GAGAGGCCTCCCAAGGAAAAGAAGCCGAAGATGACCAAAGAGGAGCGCAG AGAGAAATACACCAAGAGGTGAGGAGGGGAGAGCGCCAGGCAGGGTGGCA CAAAGCACCTTCATCATAGTCTACTCGTACAAAGTATGCTCTAGTGATTG GCCAAGGGTGCCCGTGAAAGGTGAAACCTGGTGCACCACCCCACAAATCG ATTTAGGTATCTAAATCAAGTAGAAGAGGACTTGGCAGGACCTTGTACTG TACTTGGAAGTACAATGTGCTGTTAGTGCAGTGCTGTCTATAGTACTGGT AACTGTAGTGCCCGTAAGATACAAGCAGGGTACTCCGAATCAAGTTGCAT ATCATATAATATCGTAAATGTCATATCATGGTTTCTGTGCAGCACGCACC GCTTGTCTGACTAGGCAACTTGTATGCCCCGTCTCTGCTGCATTGAATTC TACTGTACTTCAAATATTACTCGTAGTTCAATACTACGAAGTACGAAGTA CATACTCGTGCATCAAATACAAATGGAACATTGGGTACTACTTCAAATAC AATTTGAACAGGGCCGCGGACTTGCGGGAGAAGGAGCGGATGAAGACTGT ATACGCCAAGAAATTGTGCCTGGGCTGCCGCAAGTGGGGTCACGTGCTAG CCAGCTGCCCCACTGCCACCAAGGTCAGTCTACAGTAGCTATTGTATCCC ACTCGTACTCAGTACAATGTACGAGTACAAAGTAGAGTACAATGTACAAT GTACAATGTATAGCCCTTGAAGTTACTGTGCCATGACTGCAAGGTGACAT AAGTCGTGAGTGAGGCACAGAGGTTGTACGAATAGCCATGGCCCATCGAG CCAAAATGGGGACCTCACCCCGAAGTCCTTTCACGCCGGCAATAGCTTGT ACTCGGAAGTACTCTACTCTACGAGTACTACTGCAGAGTACTCTCGCAGA TGAATACTCAACTAGCTCAACTAGTGTACTGTGCACCGTGTGGACATATC ATGTGCATTCACCGACAAACGGATCTGTTGGCCTCGATATCCGACCGCTG CCCATTGAGACCTCTTGCCCCGTCAGCACGCCGTACGAGTCCTACTGGGA GTATATATATATGTATATGCACTCACGTGGTGCTTGCCGTAGTCCCGAGA CCATTGACCACGCGCCTCGATCGAGACGGAGCAACTCTCGTACAATGTTT CCGACCTCCGCCATAGCCTCGATGCACGCACGCAGGGCCCCGTGGGCATC TGCTACAAGTGCGGACTACAATATATCCTACCTCCGCCATTTCCTCCGTG CACTTATACGAGAACACTCAATCTCACACACGTGCGATTGTACCTCGTTA CAATTTTTATGAATCACCGCCTCCGTGCATGCACGCAGGGCCCCGTGGGC ATCTGCTACAACTGCGGGTCTACGGAACACGCCCTTGGAAAGTGCCCCAA GCCCCGCAGGAAGGACGGGTCGCTGCCCCACGCCATGTGCTTTGTGTGCG GGGGCGAGGGGCACCTGAGCGGGCAGTGCGAGCGAAACGAGCGGGGGGTG TACCCCAAGGGAGGACAGTGCAAGGTGAGCGTCTCTTGTGCTTGTACTTG TGCTTTAGCTCTCCAGGTGCACCGTGATTTAACTCTCCAAGTACACGATG CTTTAGCTCTCCAAGTACACAGTAGTTTAACTCTCCAGGTACTGCACAAT ACTCTTAACTCTCCAAGTACTGCACAATATTTTAACTCCCCAAATACTAC ACAATACTTTAACTCTCCAAGTACACAATACAAGCATTGATACTTTTAAC TCTCCAAGTGCACAGTACTTTAGCTCTCCAAGTACACAATATTTTACCTC TCCAAGTACACAATACTTTAAATCTCCAAGTATTGTACACAGTGCTTTAA CTCTCCAAGTACGCAGTACTTTGACTCTCCAAGTACAAAGTACTTTAAGT GGTTGACAACGAACGCAGATTCACAAAACATAAAAGCGTGCTCACATGAT TGATTTAATCCCCTCTAGCTATCGGTCGTAATCTTTGTGTCACAGTGGGT ACTACGTTCCAGTACGATAGTATACTGTGCTGTAGTAGGATACTGTACAG CAGTACAGTGGTACGAGTAGTAGGAACAACACCTGGTGAGGTGTGGACCA CATTGTTGGTACAGTAGTCGAGTACTGTGAGAAGGAGCAAGGACGAGGAT CGTTCGGGTCCAGAGCATGCACAGAGATGTGAGTACACACACTGTACATG CTGTAGCAAGGACCTCCAACCGTGATAGTAGCCTTCCTTGGTTCTTGTGC CAGGGCACGAACATGTAAGGAAGGAGTGAATGCAGTACTTCAAAGTATTC CAGTATAGTAGCAGAAGTACAACTGTACTAAGGTTGAGACCAACAACGAG TGGGATGCGGTCCATGTCACCACTTTGTGCTAACCTCAACAGTGGGCCTT CCTTCCCTCTGATAGCAACCTAAGTATGTTGTTGATTCATATAAGTTGTA GCGAGGTACAATCGCACGTGTGTGAGATTGAGTGTTCTCGTATTAGTGGC TATCCCATTTACGATTTGAGTGTTCTCGTATTAATGGTTATCACATAAAA GAATTAAAGGCAACGTAGTTGTTGATTCGATACTTCTTCCGATTTTCCAA TCTGTGGTGATTCATATAAATTGTAGCCACTCCAATCTGTGTGCGGCAGA TCTGCTCGTCCAGGAGGCACCTGGCCTCCAAGTGTCCAGAGGCCCCCGCC CAAGATGCTGCTGCTGCTGCTGCTGGTGCGTCCAGTGCGGGGGGTGGGGC ACAAGCGTCAAAGGCCGCAGGCTCTCATGGCGCCGCTAGCGCAGGTACAA GTAAGGAGACCGCCCGCAAGCGCAAGCGTGGGGCCAAGGCTGGCATTGGG GACGAGGACGAGGAGGAC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig106:166508..170125+

>mRNA_S-ischiensis_contig106.1879.1 ID=mRNA_S-ischiensis_contig106.1879.1|Name=mRNA_S-ischiensis_contig106.1879.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1518bp|location=Sequence derived from alignment at S-ischiensis_contig106:166508..170125+ (Schizocladia ischiensis KU_0333)
ATGGAGGAGAAGGTGTGCTATGTGAATCCCTCCAAGGCCTCCACCATGTC
TAAGAAAGAACGTCGAAGATGGAGGAGAAGGTGTGCTATGTGAATCCCTC
CAAGGCCTCCACCATGTCTAAGAAAGAACGTCGAAGGCTGACAAAAAAAC
TCAAGAAGGAGGCCCTGGGGCACGGGAAAAGCCATGCCCCTGTCAAGGAA
GGGAAGAAGGCCCGCAAGGCCCACCACGGCCAAGACATGGGGGAGAGGCC
TCCCAAGGAAAAGAAGCCGAAGATGACCAAAGAGGAGCGCAGAGAGAAAT
ACACCAAGAGGCTGACAAAAAAACTCAAGAAGGAGGCCCTGGGGCACGGG
AAAAGCCATGCCCCTGTCAAGGAAGGGAAGAAGGCCCGCAAGGCCCACCA
CGGCCAAGACATGGGGGAGAGGCCTCCCAAGGAAAAGAAGCCGAAGATGA
CCAAAGAGGAGCGCAGAGAGAAATACACCAAGAGGGCCGCGGACTTGCGG
GAGAAGGAGCGGATGAAGACTGTATACGCCAAGAAATTGTGCCTGGGCTG
CCGCAAGTGGGGTCACGTGCTAGCCAGCTGCCCCACTGCCACCAAGGGCC
GCGGACTTGCGGGAGAAGGAGCGGATGAAGACTGTATACGCCAAGAAATT
GTGCCTGGGCTGCCGCAAGTGGGGTCACGTGCTAGCCAGCTGCCCCACTG
CCACCAAGGGCCCCGTGGGCATCTGCTACAACTGCGGGTCTACGGAACAC
GCCCTTGGAAAGTGCCCCAAGCCCCGCAGGAAGGACGGGTCGCTGCCCCA
CGCCATGTGCTTTGTGTGCGGGGGCGAGGGGCACCTGAGCGGGCAGTGCG
AGCGAAACGAGCGGGGGGTGTACCCCAAGGGAGGACAGTGCAAGGGCCCC
GTGGGCATCTGCTACAACTGCGGGTCTACGGAACACGCCCTTGGAAAGTG
CCCCAAGCCCCGCAGGAAGGACGGGTCGCTGCCCCACGCCATGTGCTTTG
TGTGCGGGGGCGAGGGGCACCTGAGCGGGCAGTGCGAGCGAAACGAGCGG
GGGGTGTACCCCAAGGGAGGACAGTGCAAGATCTGCTCGTCCAGGAGGCA
CCTGGCCTCCAAGTGTCCAGAGGCCCCCGCCCAAGATGCTGCTGCTGCTG
CTGCTGGTGCGTCCAGTGCGGGGGGTGGGGCACAAGCGTCAAAGGCCGCA
GGCTCTCATGGCGCCGCTAGCGCAGGTACAAGTAAGGAGACCGCCCGCAA
GCGCAAGCGTGGGGCCAAGGCTGGCATTGGGGACGAGGACGAGGAGGACA
TCTGCTCGTCCAGGAGGCACCTGGCCTCCAAGTGTCCAGAGGCCCCCGCC
CAAGATGCTGCTGCTGCTGCTGCTGGTGCGTCCAGTGCGGGGGGTGGGGC
ACAAGCGTCAAAGGCCGCAGGCTCTCATGGCGCCGCTAGCGCAGGTACAA
GTAAGGAGACCGCCCGCAAGCGCAAGCGTGGGGCCAAGGCTGGCATTGGG
GACGAGGACGAGGAGGAC
back to top