mRNA_S-ischiensis_contig106.1877.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig106.1877.1
Unique NamemRNA_S-ischiensis_contig106.1877.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig106.1877.1 vs. uniprot
Match: D8LFT1_ECTSI (Cation efflux family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT1_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 5.500e-13
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 2 
Query:  173 GPARTCDSTSLDEGMDETCTAGHRHRHTAARGLDPVELRLVVFALLNLLYVIVELWGSMASRSLAMLSDAFHNLSDVAVVCLAMYVHRLARR 448
            G   +   TS+D         G     T+    D +  RL +F LLNL YV+++L G+MA  SLA++SD FHNLSDVA + +AMY+HRL RR
Sbjct:   42 GEGDSTPDTSVDSSSSSGGEGGVSAAATSGEPEDKMSGRLAIFGLLNLGYVVLQLAGAMAFGSLALMSDGFHNLSDVAAIGMAMYIHRLQRR 133
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BLAST of mRNA_S-ischiensis_contig106.1877.1 vs. uniprot
Match: A0A6C2URH4_9BACT (Zinc transporter ZitB n=1 Tax=Pontiella sulfatireligans TaxID=2750658 RepID=A0A6C2URH4_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 3.190e-7
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:  233 AGHRHRHTAARGLDP--VELRLVVFALLNLLYVIVELWGSMASRSLAMLSDAFHNLSDVAVVCLAMYVHRLARR 448
            +GH H   A  G+D   ++ RL    +LN + V+ E+ G + S SL++LSDA HNL+DVA + LA+   RL RR
Sbjct:    2 SGHHHHEAADEGIDDRSMDRRLSFSIVLNGVIVVAEVVGGLLSGSLSLLSDALHNLTDVAALVLALIARRLGRR 75
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BLAST of mRNA_S-ischiensis_contig106.1877.1 vs. uniprot
Match: A0A1Y6D1Q3_9GAMM (Cobalt-zinc-cadmium efflux system protein n=3 Tax=Methylomagnum ishizawai TaxID=1760988 RepID=A0A1Y6D1Q3_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 2.150e-6
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 2 
Query:  233 AGHRHRHTAARGLDPVELRLVVFALLNLLYVIVELWGSMASRSLAMLSDAFHNLSDVAVVCLAMYVHRLARR 448
            AGH H H  A G      RLVV  LL L +V+ E      + SLA+L+DA HN++DVA + LA Y HRLA +
Sbjct:    2 AGHTHVH--AHG-GQTRFRLVVSLLLTLGFVVFEALAGWYAHSLALLTDAAHNITDVAALALAWYAHRLAEQ 70
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BLAST of mRNA_S-ischiensis_contig106.1877.1 vs. uniprot
Match: R6WXG5_9BACT (Cation efflux system protein n=1 Tax=Alistipes sp. CAG:268 TaxID=1262693 RepID=R6WXG5_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 2.590e-6
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 2 
Query:  233 AGHRHRHTAARGLDPVELRLVVFALLNLLYVIVELWGSMASRSLAMLSDAFHNLSDVAVVCLAMYVHRLAR 445
            AGHRH H     +  +    ++   LN+ +V+VE    + S S+ +LSDA HNLSDVA + LAM   RLAR
Sbjct:   17 AGHRHEHR----ISSLNRAFLIGIALNVAFVVVEFAVGLCSGSMGLLSDAGHNLSDVASLLLAMLAFRLAR 83
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BLAST of mRNA_S-ischiensis_contig106.1877.1 vs. uniprot
Match: UPI001A96436C (cation diffusion facilitator family transporter n=1 Tax=Niastella sp. SYSU D00799 TaxID=2812563 RepID=UPI001A96436C)

HSP 1 Score: 55.8 bits (133), Expect = 2.840e-6
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 2 
Query:  239 HRHRHTAARGLDPVELRLVVFAL-LNLLYVIVELWGSMASRSLAMLSDAFHNLSDVAVVCLAMYVHRLARR 448
            H H HT A   +   L+     + LN+L+V+VE+   +A RS+++LSDA HNL+DVA + L+ +  +LARR
Sbjct:    5 HSHPHTHAVSFNEASLKAFQLGIALNVLFVLVEVVAGLAYRSISLLSDAGHNLADVASLLLSYFAFKLARR 75
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BLAST of mRNA_S-ischiensis_contig106.1877.1 vs. uniprot
Match: K1UE61_9ZZZZ (Cation efflux protein (Fragment) n=1 Tax=human gut metagenome TaxID=408170 RepID=K1UE61_9ZZZZ)

HSP 1 Score: 54.3 bits (129), Expect = 2.950e-6
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 2 
Query:  233 AGHRHRHTAARGLDPVELRLVVFALLNLLYVIVELWGSMASRSLAMLSDAFHNLSDVAVVCLAMYVHRLAR 445
            AGHRH H     +  +    ++   LN+ +V+VE    + S S+ +LSDA HNLSDVA + LAM   RLAR
Sbjct:   17 AGHRHEHR----ISSLNRAFLIGIALNVAFVVVEFVVGLCSGSMGLLSDAGHNLSDVASLLLAMLAFRLAR 83
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BLAST of mRNA_S-ischiensis_contig106.1877.1 vs. uniprot
Match: E1NNR5_9LACO (Cation efflux family protein n=2 Tax=Lactobacillus iners TaxID=147802 RepID=E1NNR5_9LACO)

HSP 1 Score: 53.5 bits (127), Expect = 5.280e-6
Identity = 24/62 (38.71%), Postives = 40/62 (64.52%), Query Frame = 2 
Query:  272 DPVELRLVVFALLNLLYVIVELWGSMASRSLAMLSDAFHNLSDVAVVCLAMYVHRLARRTQA 457
            D   ++L+   +LNL+  I E+ G +A  SLA+LSDA HNLSD   + ++   HR++R+ ++
Sbjct:    4 DYTSVKLIWITILNLIITIAEIIGGIACGSLALLSDALHNLSDTGAIIMSFIAHRISRKNKS 65
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BLAST of mRNA_S-ischiensis_contig106.1877.1 vs. uniprot
Match: A0A1N7E585_9SPHI (Cobalt-zinc-cadmium efflux system protein n=5 Tax=Mucilaginibacter TaxID=423349 RepID=A0A1N7E585_9SPHI)

HSP 1 Score: 54.7 bits (130), Expect = 7.180e-6
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 2 
Query:  233 AGHRHRHTAARGLDPVELRLVVFALLNLLYVIVELWGSMASRSLAMLSDAFHNLSDVAVVCLAMYVHRLAR 445
            AGH H H  A  LD +    +V  +LN +++IVE+   + + SL++L+DA HNLSDVA + LA+   +L +
Sbjct:   10 AGHHH-HDHAPKLDHLNTAFIVGIILNSIFIIVEVIAGLTTHSLSLLTDAGHNLSDVASLALALLAFKLTK 79
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BLAST of mRNA_S-ischiensis_contig106.1877.1 vs. uniprot
Match: A0A358RA81_9BACT (Cation transporter n=1 Tax=Alistipes sp. TaxID=1872444 RepID=A0A358RA81_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 7.200e-6
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 2 
Query:  233 AGHRHRHTAARGLDPVELRLVVFALLNLLYVIVELWGSMASRSLAMLSDAFHNLSDVAVVCLAMYVHRLAR 445
            AGHRH H     +  +    ++  +LN+ +V+VE    + S S+ +LSDA HNLSDVA + LAM   RLAR
Sbjct:   17 AGHRHEHR----ISSLNRAFLIGIVLNVAFVVVEFAVGICSGSMGLLSDAGHNLSDVASLLLAMLAFRLAR 83
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BLAST of mRNA_S-ischiensis_contig106.1877.1 vs. uniprot
Match: UPI00164FA032 (cation diffusion facilitator family transporter n=1 Tax=Flavihumibacter stibioxidans TaxID=1834163 RepID=UPI00164FA032)

HSP 1 Score: 54.3 bits (129), Expect = 9.520e-6
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:  233 AGHRHRHTAARGLDPVELRLVVFALLNLLYVIVELWGSMASRSLAMLSDAFHNLSDVAVVCLAMYVHRLAR 445
            A H H HT    +  +    ++  +LN L+VIVE    +   S+A+LSDA HNLSDVA + LA++ +RLA+
Sbjct:    2 AEHNHSHTTE--IKNLNRAFIIGIILNTLFVIVEAISGLYYHSVALLSDAGHNLSDVASLLLALFAYRLAK 70
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFT1_ECTSI5.500e-1344.57Cation efflux family protein n=1 Tax=Ectocarpus si... [more]
A0A6C2URH4_9BACT3.190e-743.24Zinc transporter ZitB n=1 Tax=Pontiella sulfatirel... [more]
A0A1Y6D1Q3_9GAMM2.150e-647.22Cobalt-zinc-cadmium efflux system protein n=3 Tax=... [more]
R6WXG5_9BACT2.590e-643.66Cation efflux system protein n=1 Tax=Alistipes sp.... [more]
UPI001A96436C2.840e-642.25cation diffusion facilitator family transporter n=... [more]
K1UE61_9ZZZZ2.950e-643.66Cation efflux protein (Fragment) n=1 Tax=human gut... [more]
E1NNR5_9LACO5.280e-638.71Cation efflux family protein n=2 Tax=Lactobacillus... [more]
A0A1N7E585_9SPHI7.180e-640.85Cobalt-zinc-cadmium efflux system protein n=5 Tax=... [more]
A0A358RA81_9BACT7.200e-643.66Cation transporter n=1 Tax=Alistipes sp. TaxID=187... [more]
UPI00164FA0329.520e-642.25cation diffusion facilitator family transporter n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:159550..161103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog2880.D8LFT1
Preferred nameZRC1
KEGG koko:K14688,ko:K14692
KEGG TC2.A.4.2,2.A.4.4.3,2.A.4.4.5
KEGG Pathwayko04978,map04978
GOsGO:0000041,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005385,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006824,GO:0006829,GO:0006873,GO:0006875,GO:0006877,GO:0006882,GO:0006950,GO:0008150,GO:0008324,GO:0009636,GO:0009966,GO:0009967,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010646,GO:0010647,GO:0012505,GO:0015075,GO:0015087,GO:0015318,GO:0016020,GO:0016021,GO:0016323,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0022857,GO:0022890,GO:0023051,GO:0023056,GO:0030001,GO:0030003,GO:0031090,GO:0031224,GO:0031984,GO:0032879,GO:0034220,GO:0040026,GO:0040028,GO:0042175,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046578,GO:0046579,GO:0046686,GO:0046873,GO:0046915,GO:0046916,GO:0048518,GO:0048522,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051056,GO:0051057,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051716,GO:0055065,GO:0055068,GO:0055069,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0061062,GO:0061063,GO:0061088,GO:0061687,GO:0065007,GO:0065008,GO:0070838,GO:0070887,GO:0071241,GO:0071248,GO:0071276,GO:0071294,GO:0071577,GO:0071585,GO:0071944,GO:0072503,GO:0072507,GO:0072509,GO:0072511,GO:0097237,GO:0097501,GO:0098588,GO:0098590,GO:0098655,GO:0098660,GO:0098662,GO:0098754,GO:0098771,GO:0098805,GO:0098827,GO:0098849,GO:0098852,GO:1902531,GO:1902533,GO:1990170,GO:1990748,GO:2000026
EggNOG free text desc.regulation of zinc ion transport
EggNOG OGsCOG1230@1,KOG1483@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size463
Cds size456
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1877.1prot_S-ischiensis_contig106.1877.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig106 159550..161096 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.3624723-CDS-S-ischiensis_contig106:159549..1596101622815568.3624723-CDS-S-ischiensis_contig106:159549..159610Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 159550..159610 -
1695739775.4914992-CDS-S-ischiensis_contig106:159549..1596101695739775.4914992-CDS-S-ischiensis_contig106:159549..159610Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 159550..159610 -
1622815568.3798313-CDS-S-ischiensis_contig106:160701..1610961622815568.3798313-CDS-S-ischiensis_contig106:160701..161096Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 160702..161096 -
1695739775.5018864-CDS-S-ischiensis_contig106:160701..1610961695739775.5018864-CDS-S-ischiensis_contig106:160701..161096Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 160702..161096 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.3933928-UTR-S-ischiensis_contig106:161096..1611031622815568.3933928-UTR-S-ischiensis_contig106:161096..161103Schizocladia ischiensis KU_0333UTRS-ischiensis_contig106 161097..161103 -
1695739775.5104942-UTR-S-ischiensis_contig106:161096..1611031695739775.5104942-UTR-S-ischiensis_contig106:161096..161103Schizocladia ischiensis KU_0333UTRS-ischiensis_contig106 161097..161103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig106.1877.1

>prot_S-ischiensis_contig106.1877.1 ID=prot_S-ischiensis_contig106.1877.1|Name=mRNA_S-ischiensis_contig106.1877.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=152bp
MTVSSRMPVRDDVPFYNGGGHSHEGGHSTGHKGHIHHVHSHSDNDHHGHS
HSHDHGPARTCDSTSLDEGMDETCTAGHRHRHTAARGLDPVELRLVVFAL
LNLLYVIVELWGSMASRSLAMLSDAFHNLSDVAVVCLAMYVHRLARRTQA
RP
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mRNA from alignment at S-ischiensis_contig106:159550..161103-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig106.1877.1 ID=mRNA_S-ischiensis_contig106.1877.1|Name=mRNA_S-ischiensis_contig106.1877.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1554bp|location=Sequence derived from alignment at S-ischiensis_contig106:159550..161103- (Schizocladia ischiensis KU_0333)
CTTGGCAATGACTGTGTCGTCGAGGATGCCTGTCCGGGATGATGTCCCCT
TCTACAACGGCGGTGGCCATAGCCATGAGGGCGGGCATAGCACTGGGCAC
AAGGGCCACATTCATCACGTCCACAGCCACAGTGACAACGACCATCACGG
CCACAGTCACAGCCACGACCACGGCCCAGCCCGCACGTGCGACTCGACGT
CCCTAGACGAAGGCATGGACGAGACCTGCACCGCAGGTCACCGCCACCGC
CACACCGCCGCCCGTGGCCTGGACCCAGTGGAGCTGCGGCTGGTGGTTTT
TGCACTGCTGAACTTGCTGTACGTCATCGTGGAGCTGTGGGGCTCCATGG
CCTCCCGCTCGCTGGCAATGCTCTCAGACGCCTTCCACAACCTGTCAGAC
GTGTGAGTCTTGCGGCAGCGGTCCACACTACTTAGGCACACAACCGTATC
GCTTTCCCCGTTTGCTGAATGCACGCCATGTGACCTGCGGCCTTTTGCTG
GTGTCTGCAAGCATCCCTTTGTCCGGCATACTGTAAACCACTGCTGTACG
AGAGCACACTGTAGACAGTACAGTGCTGCATGATGTAGTTGGCCGTCGCT
CGGCATGCTGTGACTCTCGACTGCTTGGCATGCTCTAAGGTTCTCCTCTG
CATAGCATATGCCTTCCAAAAGCAAACAGTCAACAAGACATGGCCGGGGG
TGTACTGAGCAGAATCTTCAACTCTTCCGACAAATACGGTAGTAATTAAT
AGTTACATTCGGTACTTGCGTGCACCGCTGTCCTCTGAGGGTTAATTGTA
TGACTGATCAATATTTGATGAAGTCACCGAGGACCTGCCTCCTTCCCCCC
ACCTGTCCTGTGGCCACGTGTGTGGCAGTGACGTAGTATATGCGTGCATC
GCCCGGCAAGGGCAAGGACGAAATCACCCAGTTTCACTGTGCACAACTGT
ACCGGAGGGTTAGTCACTGCATCTGCCTGCTGCCCCCACCTCCGCTTTGT
CCCCTGCCCCCTTCCTGGTTGTACTGTGCACAATTGTACTGGAGGGGTTA
ACACCATTGGGAACGCTCGCGCAAGATTTGCACCCTTTTTCTGTCACACC
TGGGGAAAAGGGCGGAGATTTTGCACCGTACTCAAACTTTATCAAGCGTC
GCTCGCGACCTTGACCAATCAAAGGCCGGAGAGACCCGGAAACAGGACCC
CGAAATCCAGGATGCGGAACGAGGCTTGGTGCCACGGCGCCACGAAAGGG
GTGCGATATGGGTGAAGTCATCGGCCCTTTCTCAGCGGGACCCTAAAACA
GCTGGATATTAGTCGATATCGGTGGCGCACATTTTCGACGTTTCCCTCGA
TCCCTATCTTTTTTAGGCTTTACGGTCGTGCATAATTTCGACCTTTCCCC
TCGTTTCGGGCGTTCGAATTGGTGTTAATTACTACATCTGCCTCCTGCCC
CCGCCTCCGCTTTGTGCCCTGCCCCCTCCTCCCCCCCTGGCAGCGCGGTG
GTGTGCCTGGCCATGTACGTGCACCGCCTGGCAAGGAGGACACAAGCCAG
ACCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig106:159550..161103-

>mRNA_S-ischiensis_contig106.1877.1 ID=mRNA_S-ischiensis_contig106.1877.1|Name=mRNA_S-ischiensis_contig106.1877.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=912bp|location=Sequence derived from alignment at S-ischiensis_contig106:159550..161103- (Schizocladia ischiensis KU_0333)
ATGACTGTGTCGTCGAGGATGCCTGTCCGGGATGATGTCCCCTTCTACAA
CGGCGGTGGCCATAGCCATGAGGGCGGGCATAGCACTGGGCACAAGGGCC
ACATTCATCACGTCCACAGCCACAGTGACAACGACCATCACGGCCACAGT
CACAGCCACGACCACGGCCCAGCCCGCACGTGCGACTCGACGTCCCTAGA
CGAAGGCATGGACGAGACCTGCACCGCAGGTCACCGCCACCGCCACACCG
CCGCCCGTGGCCTGGACCCAGTGGAGCTGCGGCTGGTGGTTTTTGCACTG
CTGAACTTGCTGTACGTCATCGTGGAGCTGTGGGGCTCCATGGCCTCCCG
CTCGCTGGCAATGCTCTCAGACGCCTTCCACAACCTGTCAGACGTATGAC
TGTGTCGTCGAGGATGCCTGTCCGGGATGATGTCCCCTTCTACAACGGCG
GTGGCCATAGCCATGAGGGCGGGCATAGCACTGGGCACAAGGGCCACATT
CATCACGTCCACAGCCACAGTGACAACGACCATCACGGCCACAGTCACAG
CCACGACCACGGCCCAGCCCGCACGTGCGACTCGACGTCCCTAGACGAAG
GCATGGACGAGACCTGCACCGCAGGTCACCGCCACCGCCACACCGCCGCC
CGTGGCCTGGACCCAGTGGAGCTGCGGCTGGTGGTTTTTGCACTGCTGAA
CTTGCTGTACGTCATCGTGGAGCTGTGGGGCTCCATGGCCTCCCGCTCGC
TGGCAATGCTCTCAGACGCCTTCCACAACCTGTCAGACGTCGCGGTGGTG
TGCCTGGCCATGTACGTGCACCGCCTGGCAAGGAGGACACAAGCCAGACC
CCGCGGTGGTGTGCCTGGCCATGTACGTGCACCGCCTGGCAAGGAGGACA
CAAGCCAGACCC
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