mRNA_S-ischiensis_contig73.18650.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig73.18650.1
Unique NamemRNA_S-ischiensis_contig73.18650.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig73.18650.1 vs. uniprot
Match: A0A067BMM3_SAPPC (PIPK domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BMM3_SAPPC)

HSP 1 Score: 77.8 bits (190), Expect = 5.370e-15
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    4 GQRRGQRCPERLSGHEPDVVLKDNDLNAVVRLGPRQAERVVDQLCADSAFLASLGLMDYSLLLAWDRQEFHV 219
            G  + Q C + L+ HEP++VLKDNDL   VR+ PR AE++ DQ+C DS FL   G+MDYSLL+     E++V
Sbjct:  417 GSTKSQECGDGLNYHEPNIVLKDNDLMTKVRIDPRSAEQLYDQICFDSDFLYDQGIMDYSLLMGVQSCEYYV 488
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BLAST of mRNA_S-ischiensis_contig73.18650.1 vs. uniprot
Match: T0RDH0_SAPDV (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0RDH0_SAPDV)

HSP 1 Score: 77.8 bits (190), Expect = 5.440e-15
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    4 GQRRGQRCPERLSGHEPDVVLKDNDLNAVVRLGPRQAERVVDQLCADSAFLASLGLMDYSLLLAWDRQEFHV 219
            G  + Q C + L+ HEP++VLKDNDL   VR+ PR AE++ DQ+C DS FL   G+MDYSLL+     E++V
Sbjct:  673 GSTKSQECGDGLNYHEPNIVLKDNDLMTKVRIDPRSAEQLYDQICFDSDFLYDQGIMDYSLLMGVQSCEYYV 744
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BLAST of mRNA_S-ischiensis_contig73.18650.1 vs. uniprot
Match: A0A1V9YY23_9STRA (Phosphatidylinositol-4-phosphate-5-kinase (Pi-PIPKD5) (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YY23_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 7.420e-15
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    4 GQRRGQRCPERLSGHEPDVVLKDNDLNAVVRLGPRQAERVVDQLCADSAFLASLGLMDYSLLLAWDRQEFHV 219
            G  + Q C + L+ HEP++VLKDNDL   VR+ PR AE++ DQ+C DS FL   G+MDYSLL+     E++V
Sbjct:  675 GSTKSQECGDGLNYHEPNIVLKDNDLMTKVRIDPRAAEQLYDQICFDSDFLYEQGIMDYSLLMGVQSCEYYV 746
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BLAST of mRNA_S-ischiensis_contig73.18650.1 vs. uniprot
Match: A0A2D4BZK6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZK6_PYTIN)

HSP 1 Score: 77.4 bits (189), Expect = 7.530e-15
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    4 GQRRGQRCPERLSGHEPDVVLKDNDLNAVVRLGPRQAERVVDQLCADSAFLASLGLMDYSLLLAWDRQEFHV 219
            G    + CP R+  HE +VVLKDNDL A VRL P+ AE + +QL  D+ FL+ LG+MDYSLLL    QE+ V
Sbjct:  651 GSTESENCPMRVGRHEANVVLKDNDLTAKVRLDPKVAEELYEQLVKDANFLSRLGIMDYSLLLGVHNQEYTV 722
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BLAST of mRNA_S-ischiensis_contig73.18650.1 vs. uniprot
Match: K3WKP0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKP0_GLOUD)

HSP 1 Score: 77.0 bits (188), Expect = 1.020e-14
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   25 CPERLSGHEPDVVLKDNDLNAVVRLGPRQAERVVDQLCADSAFLASLGLMDYSLLLAWDRQEFHV 219
            CP ++  HEP+VVLKDNDL A VRL P+ AE + DQL  D+ FL+ LG+MDYSLLL     E+ V
Sbjct:  771 CPAQVGRHEPNVVLKDNDLTARVRLDPKVAEELYDQLVKDANFLSRLGIMDYSLLLGVHNVEYMV 835
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BLAST of mRNA_S-ischiensis_contig73.18650.1 vs. uniprot
Match: A0A5D6Y1A1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1A1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.020e-14
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   25 CPERLSGHEPDVVLKDNDLNAVVRLGPRQAERVVDQLCADSAFLASLGLMDYSLLLAWDRQEFHV 219
            CP ++  HEP+VVLKDNDL A VRL P+ AE + DQL  D+ FL+ LG+MDYSLLL     E+ V
Sbjct:  772 CPAQVGRHEPNVVLKDNDLTARVRLDPKVAEELYDQLVKDAHFLSRLGIMDYSLLLGVHNVEYMV 836
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BLAST of mRNA_S-ischiensis_contig73.18650.1 vs. uniprot
Match: A0A5D6XVI4_9STRA (PIPK domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVI4_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.610e-14
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:    4 GQRRGQRCPERLSGHEPDVVLKDNDLNAVVRLGPRQAERVVDQLCADSAFLASLGLMDYSLLLAWDRQEFHV 219
            G  R Q C + L+ HEP++VLKDNDL   +R+ P QA R+ DQ+  DS FL S G+MDYSLL+     E+ V
Sbjct:  736 GSTRNQECGDGLNFHEPNIVLKDNDLMTKIRIDPTQAHRIYDQIHKDSDFLCSQGIMDYSLLMGVQSSEYLV 807
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BLAST of mRNA_S-ischiensis_contig73.18650.1 vs. uniprot
Match: M4C6W3_HYAAE (PIPK domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=M4C6W3_HYAAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.980e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   25 CPERLSGHEPDVVLKDNDLNAVVRLGPRQAERVVDQLCADSAFLASLGLMDYSLLLAWDRQEFHV 219
            C  R+  HEP+V+LKDNDL A VRL P+ AE + DQL  D+ FL+ LG+MDYSLLL     E+ V
Sbjct:  115 CRARVGRHEPNVILKDNDLTAKVRLDPKVAEELYDQLVKDANFLSRLGIMDYSLLLGIHNVEYMV 179
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BLAST of mRNA_S-ischiensis_contig73.18650.1 vs. uniprot
Match: A0A3F2RZH7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RZH7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.820e-14
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    4 GQRRGQRCPERLSGHEPDVVLKDNDLNAVVRLGPRQAERVVDQLCADSAFLASLGLMDYSLLLAWDRQEFHV 219
            G  + Q C + ++ HEPD+VLKDNDL   +R+ P  A R+ DQ+  DS FL S G+MDYSLL+     EF V
Sbjct:  705 GSTKNQECGDGMNYHEPDIVLKDNDLMTKIRIDPGTAHRIYDQIHKDSDFLCSQGIMDYSLLMGIQSSEFFV 776
[Close]
BLAST of mRNA_S-ischiensis_contig73.18650.1 vs. uniprot
Match: K3WGV7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGV7_GLOUD)

HSP 1 Score: 75.1 bits (183), Expect = 4.830e-14
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:    4 GQRRGQRCPERLSGHEPDVVLKDNDLNAVVRLGPRQAERVVDQLCADSAFLASLGLMDYSLLLAWDRQEFHV 219
            G  R Q C + L+ HEP++VLKDNDL   +R+ P QA ++ DQ+  DS FL S G+MDYSLL+     E+ V
Sbjct:  704 GSTRNQECGDGLNFHEPNIVLKDNDLMTKIRIDPSQAHKIYDQIHKDSDFLCSQGIMDYSLLMGVQSSEYMV 775
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig73.18650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067BMM3_SAPPC5.370e-1550.00PIPK domain-containing protein n=1 Tax=Saprolegnia... [more]
T0RDH0_SAPDV5.440e-1550.00Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A1V9YY23_9STRA7.420e-1550.00Phosphatidylinositol-4-phosphate-5-kinase (Pi-PIPK... [more]
A0A2D4BZK6_PYTIN7.530e-1552.78Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3WKP0_GLOUD1.020e-1456.92Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6Y1A1_9STRA1.020e-1456.92Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A5D6XVI4_9STRA2.610e-1450.00PIPK domain-containing protein (Fragment) n=1 Tax=... [more]
M4C6W3_HYAAE2.980e-1455.38PIPK domain-containing protein n=3 Tax=Peronospora... [more]
A0A3F2RZH7_9STRA4.820e-1448.61Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
K3WGV7_GLOUD4.830e-1448.61Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig73contigS-ischiensis_contig73:294884..296012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue2.5e-12
Seed eggNOG ortholog112098.XP_008616161.1
KEGG rclassRC00002,RC00078
KEGG koko:K00889
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
EC2.7.1.68
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size235
Cds size231
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig73.18650.1prot_S-ischiensis_contig73.18650.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig73 294886..296012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817203.4944172-CDS-S-ischiensis_contig73:294885..2949341622817203.4944172-CDS-S-ischiensis_contig73:294885..294934Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 294886..294934 -
1695740932.9991994-CDS-S-ischiensis_contig73:294885..2949341695740932.9991994-CDS-S-ischiensis_contig73:294885..294934Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 294886..294934 -
1622817203.50696-CDS-S-ischiensis_contig73:295483..2955451622817203.50696-CDS-S-ischiensis_contig73:295483..295545Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 295484..295545 -
1695740933.0110745-CDS-S-ischiensis_contig73:295483..2955451695740933.0110745-CDS-S-ischiensis_contig73:295483..295545Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 295484..295545 -
1622817203.5198429-CDS-S-ischiensis_contig73:295892..2960121622817203.5198429-CDS-S-ischiensis_contig73:295892..296012Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 295893..296012 -
1695740933.0230036-CDS-S-ischiensis_contig73:295892..2960121695740933.0230036-CDS-S-ischiensis_contig73:295892..296012Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 295893..296012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig73.18650.1

>prot_S-ischiensis_contig73.18650.1 ID=prot_S-ischiensis_contig73.18650.1|Name=mRNA_S-ischiensis_contig73.18650.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=77bp
RGQRRGQRCPERLSGHEPDVVLKDNDLNAVVRLGPRQAERVVDQLCADSA
FLASLGLMDYSLLLAWDRQEFHVGVHA
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mRNA from alignment at S-ischiensis_contig73:294884..296012-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig73.18650.1 ID=mRNA_S-ischiensis_contig73.18650.1|Name=mRNA_S-ischiensis_contig73.18650.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1129bp|location=Sequence derived from alignment at S-ischiensis_contig73:294884..296012- (Schizocladia ischiensis KU_0333)
CGAGGGCAGCGGCGGGGGCAGCGCTGCCCGGAGAGGCTGTCGGGGCATGA
GCCGGATGTTGTCCTCAAGGACAACGACCTCAACGCTGTGGTGCGGCTAG
GGCCGCGGCAGGCGGAGCGGGTGAGGCGGGGGGGCGGGGAGGGAGGGAGG
GATAAGGGGGGGGGGAGGTATGTGTGTGCTTGGAAGGACTGGATGTACTC
ACGCTGTGCTTGCCGCAGCCAAGGCACAAGTGACCGCGCGACCTCTTCCG
AGCTTGGAGCAATCCTCGTCCCGTTCGCACTTGCCGTAGGCCAGGGACCG
TTGAACGGGCACCTTATTCTGAGGTGTGAGAAACGGGCTCTTGAATGTCA
GTCCCCAACTGCTGAGTCAACGGCACCAGCCTGAAGCATCCTCTGTACAG
GCACGCCCGTGCCTTCACAACCGCAACACGAACAACAAACAAACGAGCAA
ACCACACGCTCTTGCAGGTTGTGGACCAGCTGTGTGCCGACAGCGCTTTC
CTCGCCTCCCTGGGGCTCATGGACTACAGGTAAGCGTTAGGATTTAGGTT
AGGGTTAGGACTAGGATTGCGTCTTCGGCGGTGTCTGCAGTGCTATGTCA
CGACCGGCTTCCCGGCCCTTCCTCTCCCCTCCTCTTCCACCTCCTCCTCC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTACTG
ATACTCCTCATCCACCTTCCCCACCCCCTCCTCCTTCCCTGCCTTCCTCC
CGCCCCTCCTCCCCATACTGCGCCATGCACACAGGAAGCTCCATCGTCGG
GGCCACCACGTAGTGCCTCGCTCCGAACCTCGCTTCATCTCTACTCCCTG
ATTCAATACAGCCTTGCGACGTTTAACCCTTTACCCCTGGGATCCGTATA
GTCTCAAGGTTTTGAGGGCAAGTCCAATTTACCAGAGGTGAAAGGATTTT
ATAGTGTCGTGTGGCTTGAAGAACGGTATGAAGTGGGTGCTGCACAACAG
TATACCGCCTGGAAGTGTGTACTCAGCACAGCCCCGGGCATTCCCCACCA
CCTCCCTCGTCCGTCCCCTACACCACAGCCTGCTGCTGGCCTGGGACCGA
CAGGAGTTCCATGTAGGTGTCCACGCACA
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Coding sequence (CDS) from alignment at S-ischiensis_contig73:294884..296012-

>mRNA_S-ischiensis_contig73.18650.1 ID=mRNA_S-ischiensis_contig73.18650.1|Name=mRNA_S-ischiensis_contig73.18650.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=462bp|location=Sequence derived from alignment at S-ischiensis_contig73:294884..296012- (Schizocladia ischiensis KU_0333)
CGAGGGCAGCGGCGGGGGCAGCGCTGCCCGGAGAGGCTGTCGGGGCATGA
GCCGGATGTTGTCCTCAAGGACAACGACCTCAACGCTGTGGTGCGGCTAG
GGCCGCGGCAGGCGGAGCGGCGAGGGCAGCGGCGGGGGCAGCGCTGCCCG
GAGAGGCTGTCGGGGCATGAGCCGGATGTTGTCCTCAAGGACAACGACCT
CAACGCTGTGGTGCGGCTAGGGCCGCGGCAGGCGGAGCGGGTTGTGGACC
AGCTGTGTGCCGACAGCGCTTTCCTCGCCTCCCTGGGGCTCATGGACTAC
AGGTTGTGGACCAGCTGTGTGCCGACAGCGCTTTCCTCGCCTCCCTGGGG
CTCATGGACTACAGCCTGCTGCTGGCCTGGGACCGACAGGAGTTCCATGT
AGGTGTCCACGCACCTGCTGCTGGCCTGGGACCGACAGGAGTTCCATGTA
GGTGTCCACGCA
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