mRNA_S-ischiensis_contig105.1845.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1845.1
Unique NamemRNA_S-ischiensis_contig105.1845.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:193223..194399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1177
Cds size684
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.8976471-CDS-S-ischiensis_contig105:193222..1939061622815563.8976471-CDS-S-ischiensis_contig105:193222..193906Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 193223..193906 +
1695739772.6714525-CDS-S-ischiensis_contig105:193222..1939061695739772.6714525-CDS-S-ischiensis_contig105:193222..193906Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 193223..193906 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.9075577-UTR-S-ischiensis_contig105:193906..1943991622815563.9075577-UTR-S-ischiensis_contig105:193906..194399Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 193907..194399 +
1695739772.6874971-UTR-S-ischiensis_contig105:193906..1943991695739772.6874971-UTR-S-ischiensis_contig105:193906..194399Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 193907..194399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1845.1prot_S-ischiensis_contig105.1845.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 193223..193906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1845.1

>prot_S-ischiensis_contig105.1845.1 ID=prot_S-ischiensis_contig105.1845.1|Name=mRNA_S-ischiensis_contig105.1845.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=228bp
MPAPCPPSPRTHPCILCPSPYRLTSPSDPLQLSPPGSRAAPTPTQRLARR
GRRGLATAVAGPPAPPRLQREQGGKCSPQAPVPLPHAASCVLLAAVHEQH
WCQAVARMMIPPRRQVAFRPWLPSLGTLVCSSAPAQDTARTPASGLGTRR
WAVPHNAGSQPPQDNRPSSTLPYPCPPLTLYPVSHPRCPPCRFSPLPCPA
YPDSPELPCLSSAAGARAAGLRLHGRG*
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mRNA from alignment at S-ischiensis_contig105:193223..194399+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1845.1 ID=mRNA_S-ischiensis_contig105.1845.1|Name=mRNA_S-ischiensis_contig105.1845.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1177bp|location=Sequence derived from alignment at S-ischiensis_contig105:193223..194399+ (Schizocladia ischiensis KU_0333)
ATGCCTGCCCCTTGCCCCCCCTCCCCCCGTACCCATCCGTGTATCCTTTG
CCCATCTCCATACAGGTTGACATCTCCATCAGATCCACTCCAGCTGAGTC
CGCCAGGCTCGCGGGCTGCGCCCACTCCGACCCAGAGGCTCGCTCGTCGA
GGTCGGCGCGGTCTCGCCACGGCCGTAGCAGGCCCACCCGCACCCCCTCG
ATTACAGCGTGAGCAAGGGGGGAAGTGCTCTCCCCAGGCTCCGGTACCCC
TTCCTCACGCTGCGTCTTGTGTGCTGCTGGCGGCTGTACATGAACAACAC
TGGTGCCAGGCAGTAGCGAGGATGATGATCCCCCCACGTCGCCAAGTTGC
CTTTCGGCCATGGCTCCCTTCTCTTGGTACTCTGGTCTGTAGCTCCGCTC
CCGCTCAGGACACCGCTCGTACCCCTGCAAGCGGTCTAGGCACTCGGCGT
TGGGCAGTTCCCCACAATGCCGGAAGCCAGCCCCCGCAGGACAATCGTCC
CTCTTCAACCCTCCCGTACCCCTGTCCACCGTTGACTCTGTATCCGGTCT
CCCACCCCCGCTGCCCCCCTTGTCGCTTCTCACCTCTCCCGTGCCCCGCA
TATCCTGACTCCCCTGAGCTTCCGTGTCTATCTTCTGCTGCTGGTGCAAG
GGCTGCTGGTCTGCGTCTTCATGGCCGTGGCTAGACAGCACGGGCACGGG
CTGCCGGACTTCGTGCTTGCCGTCAACGCGATGTTGCGGTACATCACATT
GAGGCCAGTGCACTTGCTCTGGGCCATCCCCGCCCTGCGCTGCCCCTCCT
GCTCCACTTCGGCTAAGCCCGGGTCGGGCCTCACCCAAACGTTGCGGTTG
CAGTCCTCCAACAGAACTGGTCTTGTCCCGGGGCTGGTCCAGGACAGCAA
CCTGACCCCCCCCGGACCCCGGCACCCCGCCATGCTCTTGCAAAAGCGAG
GGGGTTGGATCCCACGCGTCCTCGGCCCCAGGGATCCCGGCACTGGCACC
ACTGACCTTCGCTACACCCGGTCCCCAGCCATCGCCCGTTTGAGAAGCTA
CCTCGCAAACCACGGCTCCAGCAGTGACTAAACCCCATACGATCGAGATT
GCATGGCAGCAGCGGCGCATGCTACAACCGTCACAGGGCCCGGCCCCTCG
ATGCTGGCGGCATGGGGGGGGCCCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:193223..194399+

>mRNA_S-ischiensis_contig105.1845.1 ID=mRNA_S-ischiensis_contig105.1845.1|Name=mRNA_S-ischiensis_contig105.1845.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1368bp|location=Sequence derived from alignment at S-ischiensis_contig105:193223..194399+ (Schizocladia ischiensis KU_0333)
ATGCCTGCCCCTTGCCCCCCCTCCCCCCGTACCCATCCGTGTATCCTTTG
CCCATCTCCATACAGGTTGACATCTCCATCAGATCCACTCCAGCTGAGTC
CGCCAGGCTCGCGGGCTGCGCCCACTCCGACCCAGAGGCTCGCTCGTCGA
GGTCGGCGCGGTCTCGCCACGGCCGTAGCAGGCCCACCCGCACCCCCTCG
ATTACAGCGTGAGCAAGGGGGGAAGTGCTCTCCCCAGGCTCCGGTACCCC
TTCCTCACGCTGCGTCTTGTGTGCTGCTGGCGGCTGTACATGAACAACAC
TGGTGCCAGGCAGTAGCGAGGATGATGATCCCCCCACGTCGCCAAGTTGC
CTTTCGGCCATGGCTCCCTTCTCTTGGTACTCTGGTCTGTAGCTCCGCTC
CCGCTCAGGACACCGCTCGTACCCCTGCAAGCGGTCTAGGCACTCGGCGT
TGGGCAGTTCCCCACAATGCCGGAAGCCAGCCCCCGCAGGACAATCGTCC
CTCTTCAACCCTCCCGTACCCCTGTCCACCGTTGACTCTGTATCCGGTCT
CCCACCCCCGCTGCCCCCCTTGTCGCTTCTCACCTCTCCCGTGCCCCGCA
TATCCTGACTCCCCTGAGCTTCCGTGTCTATCTTCTGCTGCTGGTGCAAG
GGCTGCTGGTCTGCGTCTTCATGGCCGTGGCTAGATGCCTGCCCCTTGCC
CCCCCTCCCCCCGTACCCATCCGTGTATCCTTTGCCCATCTCCATACAGG
TTGACATCTCCATCAGATCCACTCCAGCTGAGTCCGCCAGGCTCGCGGGC
TGCGCCCACTCCGACCCAGAGGCTCGCTCGTCGAGGTCGGCGCGGTCTCG
CCACGGCCGTAGCAGGCCCACCCGCACCCCCTCGATTACAGCGTGAGCAA
GGGGGGAAGTGCTCTCCCCAGGCTCCGGTACCCCTTCCTCACGCTGCGTC
TTGTGTGCTGCTGGCGGCTGTACATGAACAACACTGGTGCCAGGCAGTAG
CGAGGATGATGATCCCCCCACGTCGCCAAGTTGCCTTTCGGCCATGGCTC
CCTTCTCTTGGTACTCTGGTCTGTAGCTCCGCTCCCGCTCAGGACACCGC
TCGTACCCCTGCAAGCGGTCTAGGCACTCGGCGTTGGGCAGTTCCCCACA
ATGCCGGAAGCCAGCCCCCGCAGGACAATCGTCCCTCTTCAACCCTCCCG
TACCCCTGTCCACCGTTGACTCTGTATCCGGTCTCCCACCCCCGCTGCCC
CCCTTGTCGCTTCTCACCTCTCCCGTGCCCCGCATATCCTGACTCCCCTG
AGCTTCCGTGTCTATCTTCTGCTGCTGGTGCAAGGGCTGCTGGTCTGCGT
CTTCATGGCCGTGGCTAG
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