mRNA_S-ischiensis_contig104.1808.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig104.1808.1
Unique NamemRNA_S-ischiensis_contig104.1808.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig104.1808.1 vs. uniprot
Match: D7G2K6_ECTSI (P4Hc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K6_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 1.390e-57
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1
Query:    1 KVGRYYSNQHYANHLDAFDLATEDGRRFAQNGGQRVCTVLVYLNDVSAGGCTSFPKLNLRVQPRRGVAVVFFPATLDGTLDPLALHAAEPAVDTKWVSQIWVRQGSY 321
            +VGRYY++Q YANH DAFDL TEDGRRFAQNGGQRVCTVLVYLNDV +GGCT+FP+L ++VQPR+G+AVVFFPATLDG LD   LHAAEPA+DTKWVSQIW+RQG+Y
Sbjct:  177 QVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPRKGMAVVFFPATLDGVLDSRLLHAAEPAIDTKWVSQIWIRQGAY 283          
BLAST of mRNA_S-ischiensis_contig104.1808.1 vs. uniprot
Match: A0A835YJM0_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJM0_9STRA)

HSP 1 Score: 164 bits (414), Expect = 5.290e-49
Identity = 79/107 (73.83%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    1 KVGRYYSNQHYANHLDAFDLATEDGRRFAQNGGQRVCTVLVYLNDVSAGGCTSFPKLNLRVQPRRGVAVVFFPATLDGTLDPLALHAAEPAVDTKWVSQIWVRQGSY 321
            +VGRY   Q YA HLDAFDL T+DG RFAQNGGQRV TVL+YLNDV  GG TSFP+L L V PRRG+AVVFFP+TLDG  D LALH AEPAVD K+VSQIW+RQG Y
Sbjct:  100 QVGRYLPTQFYAPHLDAFDLKTQDGMRFAQNGGQRVATVLIYLNDVPRGGNTSFPRLGLSVTPRRGMAVVFFPSTLDGCADELALHTAEPAVDVKYVSQIWIRQGLY 206          
BLAST of mRNA_S-ischiensis_contig104.1808.1 vs. uniprot
Match: A0A7S1UYE3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYE3_9STRA)

HSP 1 Score: 169 bits (427), Expect = 7.320e-49
Identity = 78/107 (72.90%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    1 KVGRYYSNQHYANHLDAFDLATEDGRRFAQNGGQRVCTVLVYLNDVSAGGCTSFPKLNLRVQPRRGVAVVFFPATLDGTLDPLALHAAEPAVDTKWVSQIWVRQGSY 321
            +VGRY+ +Q Y  H DAFDL+ EDGRRFA NGGQR  TVLVYLNDV  GG TSFP LNL VQPRRG+A+VFFPAT+DG LD +ALHAA PAVDTK+VSQ+W+RQG Y
Sbjct:  270 QVGRYFPSQQYLQHFDAFDLSNEDGRRFASNGGQRTVTVLVYLNDVHQGGATSFPALNLDVQPRRGMAIVFFPATVDGYLDKMALHAANPAVDTKYVSQVWIRQGEY 376          
BLAST of mRNA_S-ischiensis_contig104.1808.1 vs. uniprot
Match: A0A8J9TA93_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TA93_PHATR)

HSP 1 Score: 161 bits (408), Expect = 1.750e-48
Identity = 75/107 (70.09%), Postives = 88/107 (82.24%), Query Frame = 1
Query:    1 KVGRYYSNQHYANHLDAFDLATEDGRRFAQNGGQRVCTVLVYLNDVSAGGCTSFPKLNLRVQPRRGVAVVFFPATLDGTLDPLALHAAEPAVDTKWVSQIWVRQGSY 321
            +VGRY+ +Q Y  H DAFDL TEDG RFA NGGQR  TVL+YLNDV+ GG T FP LNL VQPR+G+A+VFFPAT+DG LD +ALHAA PAVDTK+VSQ+W+RQG Y
Sbjct:   82 QVGRYFPSQQYLQHYDAFDLGTEDGLRFAANGGQRTITVLLYLNDVARGGATRFPALNLDVQPRQGMALVFFPATIDGMLDRMALHAAMPAVDTKYVSQVWIRQGHY 188          
BLAST of mRNA_S-ischiensis_contig104.1808.1 vs. uniprot
Match: A0A1Z5JHE4_FISSO (P4Hc domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHE4_FISSO)

HSP 1 Score: 160 bits (404), Expect = 5.270e-47
Identity = 73/107 (68.22%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    1 KVGRYYSNQHYANHLDAFDLATEDGRRFAQNGGQRVCTVLVYLNDVSAGGCTSFPKLNLRVQPRRGVAVVFFPATLDGTLDPLALHAAEPAVDTKWVSQIWVRQGSY 321
            +VGRY+  + Y  H DAFDL+TEDGRRFA NGGQR  TVL+YLNDV  GG T FP LNL +QPRRG+A+VFFPAT+DG LD +ALHAA PA+DTK+VSQ+W+RQ  Y
Sbjct:   99 QVGRYFYQEKYLQHFDAFDLSTEDGRRFAANGGQRTVTVLIYLNDVMRGGATRFPALNLDIQPRRGMALVFFPATVDGMLDKMALHAALPAIDTKFVSQVWIRQSIY 205          
BLAST of mRNA_S-ischiensis_contig104.1808.1 vs. uniprot
Match: A0A7S2YBM7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YBM7_9STRA)

HSP 1 Score: 158 bits (400), Expect = 8.090e-47
Identity = 73/107 (68.22%), Postives = 86/107 (80.37%), Query Frame = 1
Query:    1 KVGRYYSNQHYANHLDAFDLATEDGRRFAQNGGQRVCTVLVYLNDVSAGGCTSFPKLNLRVQPRRGVAVVFFPATLDGTLDPLALHAAEPAVDTKWVSQIWVRQGSY 321
            +VGRY+++Q Y  H DAFDL TEDG RFA NGGQR  TVL+YLND   GG T FP LNL VQPRRG+A+VFFPAT+DG LD +ALHAA PA+DTK+VSQ W+RQ +Y
Sbjct:  112 QVGRYFASQQYLQHFDAFDLGTEDGLRFAANGGQRTVTVLIYLNDCERGGGTRFPALNLEVQPRRGMALVFFPATVDGMLDKMALHAALPAIDTKYVSQCWIRQSTY 218          
BLAST of mRNA_S-ischiensis_contig104.1808.1 vs. uniprot
Match: A0A6U0TVS1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0TVS1_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.260e-46
Identity = 74/107 (69.16%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    1 KVGRYYSNQHYANHLDAFDLATEDGRRFAQNGGQRVCTVLVYLNDVSAGGCTSFPKLNLRVQPRRGVAVVFFPATLDGTLDPLALHAAEPAVDTKWVSQIWVRQGSY 321
            +VGRY   Q Y  H DAFDL++EDGRRFA NGGQR  T+LVYLNDVS GG T FP+LN++VQPRRG+A+VFFPAT+DGTLD + LHAA PAVD K+VSQ+W+RQ +Y
Sbjct:  194 QVGRYLPTQQYLQHFDAFDLSSEDGRRFASNGGQRTITILVYLNDVSTGGNTVFPRLNIQVQPRRGMALVFFPATVDGTLDKMTLHAALPAVDVKYVSQVWIRQTNY 300          
BLAST of mRNA_S-ischiensis_contig104.1808.1 vs. uniprot
Match: A0A7S3KY14_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KY14_9STRA)

HSP 1 Score: 163 bits (412), Expect = 2.240e-46
Identity = 75/107 (70.09%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    1 KVGRYYSNQHYANHLDAFDLATEDGRRFAQNGGQRVCTVLVYLNDVSAGGCTSFPKLNLRVQPRRGVAVVFFPATLDGTLDPLALHAAEPAVDTKWVSQIWVRQGSY 321
            +VGRY ++Q Y  H DAFDL+TEDGRRFA NGGQR  TVL+YLNDV  GG T FP LNL VQP RG+A++FFPAT+DG LD ++LHAA PAVDTK+VSQ+W+RQGSY
Sbjct:  280 QVGRYMASQQYLQHYDAFDLSTEDGRRFASNGGQRTITVLIYLNDVHQGGATRFPALNLDVQPVRGMALIFFPATIDGMLDQMSLHAALPAVDTKYVSQVWIRQGSY 386          
BLAST of mRNA_S-ischiensis_contig104.1808.1 vs. uniprot
Match: A0A8J2S9J3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9J3_9STRA)

HSP 1 Score: 157 bits (397), Expect = 3.850e-46
Identity = 73/107 (68.22%), Postives = 86/107 (80.37%), Query Frame = 1
Query:    1 KVGRYYSNQHYANHLDAFDLATEDGRRFAQNGGQRVCTVLVYLNDVSAGGCTSFPKLNLRVQPRRGVAVVFFPATLDGTLDPLALHAAEPAVDTKWVSQIWVRQGSY 321
            +VGRY   + Y  H DAFD ++ DGRRFAQNGGQRV TVLVYLNDV+ GGCTSF KL L +QP++G A+VFFPA+LDG LD   LHAAEPA+D KWVSQIW+RQ +Y
Sbjct:  124 QVGRYRGGEFYKAHYDAFDTSSPDGRRFAQNGGQRVATVLVYLNDVARGGCTSFSKLGLSIQPKKGTALVFFPASLDGMLDQHYLHAAEPALDLKWVSQIWIRQKAY 230          
BLAST of mRNA_S-ischiensis_contig104.1808.1 vs. uniprot
Match: A0A7S2UA87_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA87_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.030e-45
Identity = 72/107 (67.29%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    1 KVGRYYSNQHYANHLDAFDLATEDGRRFAQNGGQRVCTVLVYLNDVSAGGCTSFPKLNLRVQPRRGVAVVFFPATLDGTLDPLALHAAEPAVDTKWVSQIWVRQGSY 321
            ++GRY  +Q Y  H DAFDL  E GRRFA NGGQR  TVL+YLNDV  GG T+FP LNL V+PRRG+A+VFFPAT+DG LD +ALHAA PA+DTK+VSQ+W+RQG+Y
Sbjct:  145 QIGRYLPSQKYLQHFDAFDLGDEHGRRFASNGGQRTVTVLLYLNDVMNGGHTTFPSLNLEVKPRRGMAIVFFPATIDGYLDKMALHAALPAIDTKFVSQVWIRQGNY 251          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig104.1808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2K6_ECTSI1.390e-5779.44P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YJM0_9STRA5.290e-4973.83Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S1UYE3_9STRA7.320e-4972.90Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A8J9TA93_PHATR1.750e-4870.09Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A1Z5JHE4_FISSO5.270e-4768.22P4Hc domain-containing protein n=2 Tax=Fistulifera... [more]
A0A7S2YBM7_9STRA8.090e-4768.22Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A6U0TVS1_9STRA1.260e-4669.16Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S3KY14_9STRA2.240e-4670.09Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A8J2S9J3_9STRA3.850e-4668.22Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2UA87_9STRA1.030e-4567.29Hypothetical protein n=1 Tax=Attheya septentrional... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig104contigS-ischiensis_contig104:227261..227858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.3
Seed ortholog evalue4.7e-46
Seed eggNOG ortholog2880.D7G2K6
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
EC1.14.11.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProlyl 4-hydroxylase, alpha subunit
Ec32 orthologEc-11_002580.1
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.9467561-CDS-S-ischiensis_contig104:227260..2274561622815561.9467561-CDS-S-ischiensis_contig104:227260..227456Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 227261..227456 +
1695739771.3973997-CDS-S-ischiensis_contig104:227260..2274561695739771.3973997-CDS-S-ischiensis_contig104:227260..227456Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 227261..227456 +
1622815561.9590764-CDS-S-ischiensis_contig104:227733..2278581622815561.9590764-CDS-S-ischiensis_contig104:227733..227858Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 227734..227858 +
1695739771.4083781-CDS-S-ischiensis_contig104:227733..2278581695739771.4083781-CDS-S-ischiensis_contig104:227733..227858Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 227734..227858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig104.1808.1prot_S-ischiensis_contig104.1808.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig104 227261..227858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig104.1808.1

>prot_S-ischiensis_contig104.1808.1 ID=prot_S-ischiensis_contig104.1808.1|Name=mRNA_S-ischiensis_contig104.1808.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=107bp
KVGRYYSNQHYANHLDAFDLATEDGRRFAQNGGQRVCTVLVYLNDVSAGG
CTSFPKLNLRVQPRRGVAVVFFPATLDGTLDPLALHAAEPAVDTKWVSQI
WVRQGSY
back to top

mRNA from alignment at S-ischiensis_contig104:227261..227858+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig104.1808.1 ID=mRNA_S-ischiensis_contig104.1808.1|Name=mRNA_S-ischiensis_contig104.1808.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=598bp|location=Sequence derived from alignment at S-ischiensis_contig104:227261..227858+ (Schizocladia ischiensis KU_0333)
AAGGTGGGGCGGTACTACTCCAACCAGCACTACGCCAACCACCTGGATGC CTTTGACCTGGCGACCGAGGATGGCCGGCGCTTCGCGCAGAACGGCGGCC AACGCGTGTGCACCGTCCTGGTGTACCTGAATGACGTCAGCGCAGGCGGG TGCACCTCCTTCCCCAAGCTCAACCTACGGGTGCAGCCGCGGAGAGGTGC GTGACGCCTTTTTGAGACATCTCTCTGTGTGTATCCATCTCTCACACAGC TTCCCCAAGCTCCAACTACGGGTGCAGCCGCGGAGAGGTGCGTGACGCCT TTTTGAGACATCTCTCTGTGTGTATCCATCTCTCACACAGCATGGGCATG GGGCATTTTTGCGAGAGGTCTCTCTCTCTCTCTCTCTCTCTCTCCTTGTC TCCCTCTCTCACACACACGCACACACATCACACATGCCTGCGCGCCCGCA AACACACACACGCACACACACAGGCGTCGCTGTGGTCTTCTTCCCAGCCA CCCTGGATGGCACCCTGGACCCCCTGGCCCTGCACGCCGCTGAGCCCGCC GTGGACACCAAGTGGGTGTCTCAGATATGGGTCCGCCAGGGCAGCTAC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig104:227261..227858+

>mRNA_S-ischiensis_contig104.1808.1 ID=mRNA_S-ischiensis_contig104.1808.1|Name=mRNA_S-ischiensis_contig104.1808.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=642bp|location=Sequence derived from alignment at S-ischiensis_contig104:227261..227858+ (Schizocladia ischiensis KU_0333)
AAGGTGGGGCGGTACTACTCCAACCAGCACTACGCCAACCACCTGGATGC
CTTTGACCTGGCGACCGAGGATGGCCGGCGCTTCGCGCAGAACGGCGGCC
AACGCGTGTGCACCGTCCTGGTGTACCTGAATGACGTCAGCGCAGGCGGG
TGCACCTCCTTCCCCAAGCTCAACCTACGGGTGCAGCCGCGGAGAGAAGG
TGGGGCGGTACTACTCCAACCAGCACTACGCCAACCACCTGGATGCCTTT
GACCTGGCGACCGAGGATGGCCGGCGCTTCGCGCAGAACGGCGGCCAACG
CGTGTGCACCGTCCTGGTGTACCTGAATGACGTCAGCGCAGGCGGGTGCA
CCTCCTTCCCCAAGCTCAACCTACGGGTGCAGCCGCGGAGAGGCGTCGCT
GTGGTCTTCTTCCCAGCCACCCTGGATGGCACCCTGGACCCCCTGGCCCT
GCACGCCGCTGAGCCCGCCGTGGACACCAAGTGGGTGTCTCAGATATGGG
TCCGCCAGGGCAGCTACGCGTCGCTGTGGTCTTCTTCCCAGCCACCCTGG
ATGGCACCCTGGACCCCCTGGCCCTGCACGCCGCTGAGCCCGCCGTGGAC
ACCAAGTGGGTGTCTCAGATATGGGTCCGCCAGGGCAGCTAC
back to top