mRNA_S-ischiensis_contig104.1817.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig104.1817.1
Unique NamemRNA_S-ischiensis_contig104.1817.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig104.1817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig104contigS-ischiensis_contig104:327985..328547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size563
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig104.1817.1prot_S-ischiensis_contig104.1817.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig104 328179..328532 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.2708325-UTR-S-ischiensis_contig104:327984..3281781622815560.2708325-UTR-S-ischiensis_contig104:327984..328178Schizocladia ischiensis KU_0333UTRS-ischiensis_contig104 327985..328178 +
1695739770.186905-UTR-S-ischiensis_contig104:327984..3281781695739770.186905-UTR-S-ischiensis_contig104:327984..328178Schizocladia ischiensis KU_0333UTRS-ischiensis_contig104 327985..328178 +
1622815560.2923408-UTR-S-ischiensis_contig104:328532..3285471622815560.2923408-UTR-S-ischiensis_contig104:328532..328547Schizocladia ischiensis KU_0333UTRS-ischiensis_contig104 328533..328547 +
1695739770.2038233-UTR-S-ischiensis_contig104:328532..3285471695739770.2038233-UTR-S-ischiensis_contig104:328532..328547Schizocladia ischiensis KU_0333UTRS-ischiensis_contig104 328533..328547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.2821414-CDS-S-ischiensis_contig104:328178..3285321622815560.2821414-CDS-S-ischiensis_contig104:328178..328532Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 328179..328532 +
1695739770.1954193-CDS-S-ischiensis_contig104:328178..3285321695739770.1954193-CDS-S-ischiensis_contig104:328178..328532Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 328179..328532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig104.1817.1

>prot_S-ischiensis_contig104.1817.1 ID=prot_S-ischiensis_contig104.1817.1|Name=mRNA_S-ischiensis_contig104.1817.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=118bp
MATAWLGVFCIGACVCMCFVQVLFENFGGRAAATVAARTSEAALMIHCQV
VGASGGHGRRPQAEPLPQRVLLRSTLKHCQRAVVPSSQCKGEHPPIVKEK
PCPKKNGSYTFIEYYQD*
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mRNA from alignment at S-ischiensis_contig104:327985..328547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig104.1817.1 ID=mRNA_S-ischiensis_contig104.1817.1|Name=mRNA_S-ischiensis_contig104.1817.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=563bp|location=Sequence derived from alignment at S-ischiensis_contig104:327985..328547+ (Schizocladia ischiensis KU_0333)
TGGGTTGGCCCCGTCAGTTCCGTTGTTTTTTACGCCCGGTGACCCCGGCT
GTGGGTCTCTGGGGCGGTAGTCCTCGTTCCAGTTTTGCTGCACTTGGAAG
TATGTACTTACACTAGTCATCTGCTACTGGTGCTGTCCCTGATCAGCTGT
GTTCCGTGTGTTGATGTTGCGGCACCCGGCTGCAGCGTGTGCCCATGGCG
ACGGCGTGGTTGGGTGTGTTCTGCATTGGTGCATGTGTGTGTATGTGTTT
TGTGCAAGTACTTTTTGAAAATTTTGGTGGACGCGCAGCCGCCACCGTGG
CGGCACGGACCAGCGAGGCGGCGCTCATGATCCATTGTCAAGTGGTTGGA
GCATCAGGTGGCCACGGGCGGAGACCCCAGGCCGAACCTTTGCCCCAGCG
GGTACTGCTTCGAAGCACTTTGAAGCACTGTCAACGCGCAGTAGTGCCAT
CTTCCCAATGTAAAGGAGAACATCCCCCAATTGTAAAGGAGAAGCCTTGT
CCCAAGAAGAATGGGAGCTACACCTTCATTGAGTACTATCAAGACTAAGA
GGACGGGGCCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig104:327985..328547+

>mRNA_S-ischiensis_contig104.1817.1 ID=mRNA_S-ischiensis_contig104.1817.1|Name=mRNA_S-ischiensis_contig104.1817.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=708bp|location=Sequence derived from alignment at S-ischiensis_contig104:327985..328547+ (Schizocladia ischiensis KU_0333)
ATGGCGACGGCGTGGTTGGGTGTGTTCTGCATTGGTGCATGTGTGTGTAT
GTGTTTTGTGCAAGTACTTTTTGAAAATTTTGGTGGACGCGCAGCCGCCA
CCGTGGCGGCACGGACCAGCGAGGCGGCGCTCATGATCCATTGTCAAGTG
GTTGGAGCATCAGGTGGCCACGGGCGGAGACCCCAGGCCGAACCTTTGCC
CCAGCGGGTACTGCTTCGAAGCACTTTGAAGCACTGTCAACGCGCAGTAG
TGCCATCTTCCCAATGTAAAGGAGAACATCCCCCAATTGTAAAGGAGAAG
CCTTGTCCCAAGAAGAATGGGAGCTACACCTTCATTGAGTACTATCAAGA
CTAAATGGCGACGGCGTGGTTGGGTGTGTTCTGCATTGGTGCATGTGTGT
GTATGTGTTTTGTGCAAGTACTTTTTGAAAATTTTGGTGGACGCGCAGCC
GCCACCGTGGCGGCACGGACCAGCGAGGCGGCGCTCATGATCCATTGTCA
AGTGGTTGGAGCATCAGGTGGCCACGGGCGGAGACCCCAGGCCGAACCTT
TGCCCCAGCGGGTACTGCTTCGAAGCACTTTGAAGCACTGTCAACGCGCA
GTAGTGCCATCTTCCCAATGTAAAGGAGAACATCCCCCAATTGTAAAGGA
GAAGCCTTGTCCCAAGAAGAATGGGAGCTACACCTTCATTGAGTACTATC
AAGACTAA
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