prot_S-ischiensis_contig69.17864.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig69.17864.1
Unique Nameprot_S-ischiensis_contig69.17864.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length288
Homology
BLAST of mRNA_S-ischiensis_contig69.17864.1 vs. uniprot
Match: A0A836CIY7_9STRA (SMP-LTD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIY7_9STRA)

HSP 1 Score: 140 bits (353), Expect = 9.320e-34
Identity = 78/169 (46.15%), Postives = 111/169 (65.68%), Query Frame = 0
Query:  111 RSKLQEEGGRLMKSFFKLTKHTSHGICRAVNVTGNAAGVVAGGTFRIVGAAVLDAAEGLQAASDES----PVRVPGLDDTFRAFTKGLRECGSAVYKIGEAAENVTAKGVEVAEEALRAAVEGIIDAAEDTTNFLLKLDEELESGD-YFTDVDERIVEHLVDITSATEG 274
            +S+LQ EG  +    FK+++H SHG+CRAVNVTG  A  VAG  F++ GAAV+DA++GL+ A   +    P++VP LD       K L++ G  VY++GE AEN T + V +AE+A+R  +EG ID  EDTT+ LL+LD+E E  D +F  VD RI+EH+V+ +    G
Sbjct:   86 KSQLQREGKVVFGKLFKVSRHASHGVCRAVNVTGTTAATVAGSLFKLAGAAVMDASQGLEYAQARACAAAPMKVPVLDKGVTLVAKSLKKSGDFVYRLGELAENATTEAVGMAEDAVRYLMEGTIDNVEDTTSLLLQLDDEDEEYDAFFRSVDARIIEHVVETSQPRRG 254          
BLAST of mRNA_S-ischiensis_contig69.17864.1 vs. uniprot
Match: A0A6H5LP07_9PHAE (SMP-LTD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LP07_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 8.430e-21
Identity = 72/194 (37.11%), Postives = 107/194 (55.15%), Query Frame = 0
Query:   73 GGNAGERVFRNATLSPAAQPGRSKAGMLTTAGAQSYPPRSKLQEEGGRLMKSFFKLTKHTSHGICRAVNVTGNAAGVVAGGTFRIVGAAVLDAAEGLQAASDESPVRVPGLDDTFRAFTKGLRECGSAVYKIGEAAENVTAKGVEVAEEALRAAVEGIIDAAEDTTNFLLKLDEELESGDYFTDVDERIVEHLV 266
            G +A E+VF+   +  +    RSK  M  +        RS+L+ EG  L++S   +T  T++G+ RAVNVTG AA VVAGG F++ GAAVLDA                   DT+R   KGLR+    VY  G AAENVTA+  EVAEE +R+ V  +I+ A   ++         ++  YF++ ++RI++++V
Sbjct:  111 GTDAHEQVFKQTHVYRSQVHHRSKRTMSNSG-------RSRLRREGDSLLRSLKTVTTRTTNGLARAVNVTGTAASVVAGGAFKLAGAAVLDAV------------------DTWRFVAKGLRKTAETVYDFGVAAENVTAEATEVAEETIRSVVGSVINPASPGSD--------AQTRGYFSEEEDRIIDNMV 271          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig69.17864.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CIY7_9STRA9.320e-3446.15SMP-LTD domain-containing protein n=1 Tax=Tribonem... [more]
A0A6H5LP07_9PHAE8.430e-2137.11SMP-LTD domain-containing protein n=2 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 27..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..288
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..33
score: 0.743

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig69contigS-ischiensis_contig69:564352..567989 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig69.17864.1mRNA_S-ischiensis_contig69.17864.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig69 564352..567992 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig69.17864.1 ID=prot_S-ischiensis_contig69.17864.1|Name=mRNA_S-ischiensis_contig69.17864.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=288bp
MRRLRRGTRKGRLRVCSCLVVLGVALLARCTSSCHTGGLAVSTVTRANHD
GITAPTAGEATPAAGNSTSSGTGGNAGERVFRNATLSPAAQPGRSKAGML
TTAGAQSYPPRSKLQEEGGRLMKSFFKLTKHTSHGICRAVNVTGNAAGVV
AGGTFRIVGAAVLDAAEGLQAASDESPVRVPGLDDTFRAFTKGLRECGSA
VYKIGEAAENVTAKGVEVAEEALRAAVEGIIDAAEDTTNFLLKLDEELES
GDYFTDVDERIVEHLVDITSATEGGGEGGGREGAEGAG
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