prot_S-ischiensis_contig103.1770.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig103.1770.1
Unique Nameprot_S-ischiensis_contig103.1770.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length265
Homology
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BLAST of mRNA_S-ischiensis_contig103.1770.1 vs. uniprot
Match: A0A835YQA1_9STRA (PUB domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.310e-6
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 0 
Query:   16 SRSEDITFALKILSAAVEHPEEPRYRRIKKSNKKFFGEVWLQRGVRETFLSLGFKE 71
            + +ED T A+K L    +HP+E +YR +KK N +F  EVWL  G+R  F ++GF+E
Sbjct:   19 ANNEDPTTAVKYLINIAKHPQEGKYRVLKKQNSRFMNEVWLNPGIRGMFQAIGFRE 74
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig103.1770.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YQA1_9STRA1.310e-644.64PUB domain-containing protein (Fragment) n=1 Tax=T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.58.2190coord: 14..96
e-value: 1.3E-10
score: 42.7
IPR018997PUB domainPFAMPF09409PUBcoord: 26..83
e-value: 6.2E-11
score: 42.1
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 198..219
IPR036339PUB-like domain superfamilySUPERFAMILY143503PUG domain-likecoord: 25..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig103contigS-ischiensis_contig103:14139..21624 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig103.1770.1mRNA_S-ischiensis_contig103.1770.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig103 13411..22128 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig103.1770.1 ID=prot_S-ischiensis_contig103.1770.1|Name=mRNA_S-ischiensis_contig103.1770.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=265bp
MSDEGALRAALQIVESRSEDITFALKILSAAVEHPEEPRYRRIKKSNKKF
FGEVWLQRGVRETFLSLGFKEVHEDGESLVVLDPFPPETKRLTSAAIAGL
RIAREKTEAVPAAAPLQPPTQSTGTPSSSAAWAGRAVPRQQGRGGGGGGV
GGGSIPMPTSTANLFCDCCGRGDLHEDKDSRRPDNLWRANRPGVAVVCSS
CGGGFVICGQCFNHRSYSHPPDHQLVLFTTPDGDAQRPAWPTRNRGYMPP
PPGTGDRPRRGAWG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018997PUB_domain
IPR013087Znf_C2H2_type
IPR036339PUB-like_dom_sf