mRNA_S-ischiensis_contig100.1686.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig100.1686.1
Unique NamemRNA_S-ischiensis_contig100.1686.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig100.1686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig100contigS-ischiensis_contig100:306392..307353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size962
Cds size741
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.7085922-UTR-S-ischiensis_contig100:306391..3066121622815545.7085922-UTR-S-ischiensis_contig100:306391..306612Schizocladia ischiensis KU_0333UTRS-ischiensis_contig100 306392..306612 +
1695739760.9231102-UTR-S-ischiensis_contig100:306391..3066121695739760.9231102-UTR-S-ischiensis_contig100:306391..306612Schizocladia ischiensis KU_0333UTRS-ischiensis_contig100 306392..306612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.720559-CDS-S-ischiensis_contig100:306612..3073531622815545.720559-CDS-S-ischiensis_contig100:306612..307353Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 306613..307353 +
1695739760.9311984-CDS-S-ischiensis_contig100:306612..3073531695739760.9311984-CDS-S-ischiensis_contig100:306612..307353Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 306613..307353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig100.1686.1prot_S-ischiensis_contig100.1686.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig100 306613..307353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig100.1686.1

>prot_S-ischiensis_contig100.1686.1 ID=prot_S-ischiensis_contig100.1686.1|Name=mRNA_S-ischiensis_contig100.1686.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=247bp
MDSRIPTIGLYVQSWQRVCYRNNAHCTRVTVQYCTVQHSYSDSTARLSTS
LQVQILRVHYLLTRAQAHASKRPRARSGGRRRRWRRRWRLPSPHQGARGL
IRGGARSSSGVGGGGGVGGGGGGGRLLWAAVEAGPDLPYPRHPSRPCPAE
GKARGLDGPPPARRRCGPDHPRPRHPGRTRRAEGASHGPESPPAAGCRCM
GACQGYPHHTLAHRSWTLPWQGPAGRLLRPPGVPGAWPAPVVAGQER
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mRNA from alignment at S-ischiensis_contig100:306392..307353+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig100.1686.1 ID=mRNA_S-ischiensis_contig100.1686.1|Name=mRNA_S-ischiensis_contig100.1686.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=962bp|location=Sequence derived from alignment at S-ischiensis_contig100:306392..307353+ (Schizocladia ischiensis KU_0333)
GCCTAGGCAGGGGGCTACTCGCTGCCTCAAGTGTAACAACACGAGGCGTG
TACTCGCACCGGCTAGGCCCCAAGGGGCCTCCTACAGTGGTTTATAGTAC
AGAAGAATGCAATGTATATATGTACTCATTGGGTTGTCTTGCGACATAAC
CGTGCGTGCAGCGCCGACAGCCCTAAGTCAAAACTTTGGGGTTGCCCTGC
GACAGGAGTAGCTTATAAGCCATGGACTCTCGCATCCCAACTATAGGACT
ATACGTGCAAAGCTGGCAGCGCGTATGCTACAGAAACAATGCGCACTGTA
CTCGAGTTACAGTGCAGTACTGTACAGTACAGCACTCGTACAGTGACAGC
ACTGCACGGCTAAGTACTTCATTGCAAGTGCAGATACTTCGAGTACACTA
CTTACTCACACGAGCCCAGGCACATGCCAGCAAGCGCCCCCGTGCCCGGA
GCGGCGGGCGTCGCAGACGATGGCGGCGGCGGTGGCGACTGCCATCCCCT
CACCAGGGGGCCCGGGGACTGATCCGCGGAGGAGCCAGAAGCAGCAGTGG
TGTCGGCGGCGGCGGTGGTGTTGGCGGCGGCGGTGGCGGGGGTCGTCTCT
TATGGGCTGCGGTGGAAGCCGGCCCCGATCTCCCATACCCCCGCCACCCC
AGCCGCCCATGCCCCGCGGAGGGCAAGGCCCGCGGCCTTGATGGCCCACC
ACCCGCCCGACGCCGCTGCGGGCCTGATCACCCTCGCCCCCGCCACCCCG
GCCGCACACGCCGCGCAGAGGGCGCGTCCCACGGCCCTGAGAGCCCACCA
GCAGCCGGATGCCGCTGCATGGGCGCATGCCAAGGATACCCTCACCACAC
GCTGGCACACCGTTCATGGACGCTCCCTTGGCAAGGGCCTGCTGGTCGGC
TCCTGCGCCCTCCGGGTGTACCGGGAGCGTGGCCGGCCCCGGTTGTTGCC
GGCCAGGAGCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig100:306392..307353+

>mRNA_S-ischiensis_contig100.1686.1 ID=mRNA_S-ischiensis_contig100.1686.1|Name=mRNA_S-ischiensis_contig100.1686.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1482bp|location=Sequence derived from alignment at S-ischiensis_contig100:306392..307353+ (Schizocladia ischiensis KU_0333)
ATGGACTCTCGCATCCCAACTATAGGACTATACGTGCAAAGCTGGCAGCG
CGTATGCTACAGAAACAATGCGCACTGTACTCGAGTTACAGTGCAGTACT
GTACAGTACAGCACTCGTACAGTGACAGCACTGCACGGCTAAGTACTTCA
TTGCAAGTGCAGATACTTCGAGTACACTACTTACTCACACGAGCCCAGGC
ACATGCCAGCAAGCGCCCCCGTGCCCGGAGCGGCGGGCGTCGCAGACGAT
GGCGGCGGCGGTGGCGACTGCCATCCCCTCACCAGGGGGCCCGGGGACTG
ATCCGCGGAGGAGCCAGAAGCAGCAGTGGTGTCGGCGGCGGCGGTGGTGT
TGGCGGCGGCGGTGGCGGGGGTCGTCTCTTATGGGCTGCGGTGGAAGCCG
GCCCCGATCTCCCATACCCCCGCCACCCCAGCCGCCCATGCCCCGCGGAG
GGCAAGGCCCGCGGCCTTGATGGCCCACCACCCGCCCGACGCCGCTGCGG
GCCTGATCACCCTCGCCCCCGCCACCCCGGCCGCACACGCCGCGCAGAGG
GCGCGTCCCACGGCCCTGAGAGCCCACCAGCAGCCGGATGCCGCTGCATG
GGCGCATGCCAAGGATACCCTCACCACACGCTGGCACACCGTTCATGGAC
GCTCCCTTGGCAAGGGCCTGCTGGTCGGCTCCTGCGCCCTCCGGGTGTAC
CGGGAGCGTGGCCGGCCCCGGTTGTTGCCGGCCAGGAGCGCATGGACTCT
CGCATCCCAACTATAGGACTATACGTGCAAAGCTGGCAGCGCGTATGCTA
CAGAAACAATGCGCACTGTACTCGAGTTACAGTGCAGTACTGTACAGTAC
AGCACTCGTACAGTGACAGCACTGCACGGCTAAGTACTTCATTGCAAGTG
CAGATACTTCGAGTACACTACTTACTCACACGAGCCCAGGCACATGCCAG
CAAGCGCCCCCGTGCCCGGAGCGGCGGGCGTCGCAGACGATGGCGGCGGC
GGTGGCGACTGCCATCCCCTCACCAGGGGGCCCGGGGACTGATCCGCGGA
GGAGCCAGAAGCAGCAGTGGTGTCGGCGGCGGCGGTGGTGTTGGCGGCGG
CGGTGGCGGGGGTCGTCTCTTATGGGCTGCGGTGGAAGCCGGCCCCGATC
TCCCATACCCCCGCCACCCCAGCCGCCCATGCCCCGCGGAGGGCAAGGCC
CGCGGCCTTGATGGCCCACCACCCGCCCGACGCCGCTGCGGGCCTGATCA
CCCTCGCCCCCGCCACCCCGGCCGCACACGCCGCGCAGAGGGCGCGTCCC
ACGGCCCTGAGAGCCCACCAGCAGCCGGATGCCGCTGCATGGGCGCATGC
CAAGGATACCCTCACCACACGCTGGCACACCGTTCATGGACGCTCCCTTG
GCAAGGGCCTGCTGGTCGGCTCCTGCGCCCTCCGGGTGTACCGGGAGCGT
GGCCGGCCCCGGTTGTTGCCGGCCAGGAGCGC
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