mRNA_S-ischiensis_contig100.1687.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig100.1687.1
Unique NamemRNA_S-ischiensis_contig100.1687.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig100.1687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig100contigS-ischiensis_contig100:322140..323968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size253
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.5343482-CDS-S-ischiensis_contig100:322139..3221941622815545.5343482-CDS-S-ischiensis_contig100:322139..322194Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 322140..322194 +
1695739760.8607936-CDS-S-ischiensis_contig100:322139..3221941695739760.8607936-CDS-S-ischiensis_contig100:322139..322194Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 322140..322194 +
1622815545.5465724-CDS-S-ischiensis_contig100:323772..3239661622815545.5465724-CDS-S-ischiensis_contig100:323772..323966Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 323773..323966 +
1695739760.871304-CDS-S-ischiensis_contig100:323772..3239661695739760.871304-CDS-S-ischiensis_contig100:323772..323966Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 323773..323966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig100.1687.1prot_S-ischiensis_contig100.1687.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig100 322140..323966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig100.1687.1

>prot_S-ischiensis_contig100.1687.1 ID=prot_S-ischiensis_contig100.1687.1|Name=mRNA_S-ischiensis_contig100.1687.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=83bp
ELQRQKTSLLARQQPAALGDLEAQIAELRLESAEQISELRWIKDDMTKSK
TVKVSEMTTARKCHAWMAHMGLEIKVFEGSATQ
back to top

mRNA from alignment at S-ischiensis_contig100:322140..323968+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig100.1687.1 ID=mRNA_S-ischiensis_contig100.1687.1|Name=mRNA_S-ischiensis_contig100.1687.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1829bp|location=Sequence derived from alignment at S-ischiensis_contig100:322140..323968+ (Schizocladia ischiensis KU_0333)
GAGCTACAGAGGCAGAAGACGTCTCTCTTGGCCCGACAGCAGCCCGCTGC
CCTAGGTGCGACCCTAAAAGAACCACGAAGAACCAGGAAGAACCAAAAAG
GACCACCAACCGAATTGACCCGACCGCGACCACGCGAGCTTACGGCCCCC
GTTCCATCAGTATCTTCGTTCCTGCCGTCGACCAATGGCCTTAAAGCCAT
CGTGAGCACCTTGTCCCCAGCGTGAAGGGCTCTCTGTTCCCGCGGGGTCA
TGGCTGCTTGTTTCGCGTGTGCTGCACCCTGCTGGCTTACGAAGGCCCAT
GCTCTCCGTCGATCAAGGCATGTGAATGGCGCTTCCTCCATCGTCCCCAC
CTCCGGTGTGAATGCGCCATCTGGTTTCTACTTTTTCATGGGCCAAATTG
AGGTTCTTCTTGGGGCACGCACACACCACATGCTGTTTGCCTCCAATTTC
TTGTGACATCTGTGGGCCACTCCCCCGCAACGCTTTGACTGTCGTTCTAT
CCTGGGCGCATATTTTTGTGGTCTGGCCCATTTGCGAAATGTTGTATGTG
TGCTTGTGCTCACGAGCAACTTCTGAGCTACACAACTGACTGCCGCGCCC
AGGGCTATGCGCACTGTTGCTGATTTGCCGTGAGCCACAATTTCTGCTTT
TTGTGTACCTCAGAGATTTGGTTTCCCTGCTCTGCCCTTGGTGGCCACAT
GTCAAGGTGAGTGTAGTGCCCTGCACCCTGTACTCTTTGCTTGTGTTGTT
GCCGCGTTGAACGTCGTTGGTTGATGCCTTTGTTTGTGTGAATGTTGCCA
TTAAGAACCAGTCAAGAGTAAATTGTCATTCATGTACAAGGCACACCAGC
AAGTACAGGTACTGCTGTACAAGCACATCCAAAACTGAAAGACAGTAGAT
ACCCCTATGACACACTGACTACCTAGTGTACATACACCTACAGAGCTTGC
CGTAGACCAGAGAGCATTGGCCATGCAGCTTGTTCCAGGTGAAGCAGCTG
TGATTTGTCCAAGTTTGATTGTGCAGCAATTGTACATGACATCCCCGCAC
AAAAATGCTGTAGTGCAGTACTACATACACATTGTGGCCCGGGAGTGCGC
TTGTCGCAAGACCCCACCTGGACATTGTGGGTGCCCCTTGAGTGCACCAG
GGTGATGCGCCCGTGCACTAACATAGTAATCCACCCCCCCTGTCCCTGGG
TGCCCCACCGTTGCCTGCCTCTGTGCTTGCATGCTGCGCTCGCTGCGATC
CTCCTTGCTCCACGGGGTGCCGTCCTCTCAACTGCTGCATGACGCAGGTG
TGTTGCGCGTTTACAGCGTTTTTGTTTTTCGTGGTTCGCCATCTGTACGA
TCTGTGTTGAGGTCTGCCCTCATTGCGCGTTACATGCACCAGTCCTGAGC
ACTTTTCCGTGGCTCCTGTGCAAGTACAGCAGTACCTGTGTATGACGTAC
CACCCAATAATACTACGGCAAGTACATGGGCAAGACTACAGAGATCATGC
TTTTCGTTTCAGTCGTTTTCCGTGCAACCTTGACCCTTCATGTGGTCGCC
GCACAATTTGTCAGGCATGTCGTAGGTTTGCTGACTGCCTGTTTGTGTGC
CAAAGCAGTTCTTGTGGTGCTGCCTGAATGCAGGTGACTTGGAGGCGCAG
ATTGCAGAGCTCCGCTTGGAGTCTGCCGAACAGATTTCAGAGCTCCGCTG
GATCAAGGACGACATGACGAAGTCCAAGACCGTCAAAGTGTCTGAGATGA
CAACGGCAAGGAAGTGCCATGCCTGGATGGCACACATGGGCCTGGAGATC
AAAGTGTTCGAAGGGTCTGCTACGCAAGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig100:322140..323968+

>mRNA_S-ischiensis_contig100.1687.1 ID=mRNA_S-ischiensis_contig100.1687.1|Name=mRNA_S-ischiensis_contig100.1687.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=498bp|location=Sequence derived from alignment at S-ischiensis_contig100:322140..323968+ (Schizocladia ischiensis KU_0333)
GAGCTACAGAGGCAGAAGACGTCTCTCTTGGCCCGACAGCAGCCCGCTGC
CCTAGGAGCTACAGAGGCAGAAGACGTCTCTCTTGGCCCGACAGCAGCCC
GCTGCCCTAGGTGACTTGGAGGCGCAGATTGCAGAGCTCCGCTTGGAGTC
TGCCGAACAGATTTCAGAGCTCCGCTGGATCAAGGACGACATGACGAAGT
CCAAGACCGTCAAAGTGTCTGAGATGACAACGGCAAGGAAGTGCCATGCC
TGGATGGCACACATGGGCCTGGAGATCAAAGTGTTCGAAGGGTCTGCTAC
GCAAGTGACTTGGAGGCGCAGATTGCAGAGCTCCGCTTGGAGTCTGCCGA
ACAGATTTCAGAGCTCCGCTGGATCAAGGACGACATGACGAAGTCCAAGA
CCGTCAAAGTGTCTGAGATGACAACGGCAAGGAAGTGCCATGCCTGGATG
GCACACATGGGCCTGGAGATCAAAGTGTTCGAAGGGTCTGCTACGCAA
back to top