mRNA_S-ischiensis_contig10.1661.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1661.1
Unique NamemRNA_S-ischiensis_contig10.1661.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3560716..3561506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size147
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1661.1prot_S-ischiensis_contig10.1661.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 3560716..3561479 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.537153-CDS-S-ischiensis_contig10:3560715..35607931622815544.537153-CDS-S-ischiensis_contig10:3560715..3560793Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3560716..3560793 -
1695739760.1410012-CDS-S-ischiensis_contig10:3560715..35607931695739760.1410012-CDS-S-ischiensis_contig10:3560715..3560793Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3560716..3560793 -
1622815544.5477078-CDS-S-ischiensis_contig10:3561410..35614791622815544.5477078-CDS-S-ischiensis_contig10:3561410..3561479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3561411..3561479 -
1695739760.1487432-CDS-S-ischiensis_contig10:3561410..35614791695739760.1487432-CDS-S-ischiensis_contig10:3561410..3561479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3561411..3561479 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.5607529-UTR-S-ischiensis_contig10:3561479..35615061622815544.5607529-UTR-S-ischiensis_contig10:3561479..3561506Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3561480..3561506 -
1695739760.1585243-UTR-S-ischiensis_contig10:3561479..35615061695739760.1585243-UTR-S-ischiensis_contig10:3561479..3561506Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3561480..3561506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1661.1

>prot_S-ischiensis_contig10.1661.1 ID=prot_S-ischiensis_contig10.1661.1|Name=mRNA_S-ischiensis_contig10.1661.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=49bp
MLYFFDLQGVASGGPEGDLLYTQGIAAVPGRSHFLVGCSDGCAFVFSVR
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mRNA from alignment at S-ischiensis_contig10:3560716..3561506-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1661.1 ID=mRNA_S-ischiensis_contig10.1661.1|Name=mRNA_S-ischiensis_contig10.1661.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=791bp|location=Sequence derived from alignment at S-ischiensis_contig10:3560716..3561506- (Schizocladia ischiensis KU_0333)
CAGGTCTGGACGGCAGATTGCAAGCGGATGCTCTACTTCTTTGATCTGCA
GGGGGTGGCCAGCGGGGGGCCAGAAGGAGACCTGCTGTATACCCAGGTGC
TTCTCGCCACAAAAGACCCCTGAGCCTCTGAACTTTTTGCCTGAGCCGCA
AACAGAGAGCTTGCTTGTGGGGGTGCGTAGAGTCTGGGCGCCGAGAGCCG
AAACCTTCCCGCTCATGCCCCTTGGTGTTCCGCGAGGTGGACGGGGTGAA
GGCGCCCCCTTTTCATGTAGGTATGTGGTGATTTTCCCTCATGGCACGTG
CATCATTGATCAGTACCGCTTGGCTTCAAAGCGTGGCACTTGCTTTGCTG
TGGGACACTGGCAATCTCTTGGCTGTCGCTGCAGCACAACACTCCAAAGT
ACCCCTCAGGTTCGAAGCGAACATGCCTACTCGTACGTACACACAGAAGT
GACACTACTTATTGCCTGCAAGCACTGAGCCGCTCGCTGTCCGCTAAACG
CCCGCGCTCCCATCAAAGAAGACGGGGCCCAACCCTCTCTTCCCCACCGG
CCCGGAGCGGACCCTTGGCTCCCACCCGCTCCGGCATGTGCTCCTACCTA
CCGATATACTTCCCAGTGCCCGCGATTCGGCCTGTCGCTCTTAGCTCACG
GGAGTCCTCAACTGACAGCATTCGTCCCCCCCTCGCGTCACGTGTTCCTC
ACACCCCGCACAGGGCATCGCAGCCGTGCCCGGGCGGAGTCACTTCTTGG
TGGGGTGCAGCGACGGCTGCGCTTTTGTCTTCTCCGTGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:3560716..3561506-

>mRNA_S-ischiensis_contig10.1661.1 ID=mRNA_S-ischiensis_contig10.1661.1|Name=mRNA_S-ischiensis_contig10.1661.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=294bp|location=Sequence derived from alignment at S-ischiensis_contig10:3560716..3561506- (Schizocladia ischiensis KU_0333)
ATGCTCTACTTCTTTGATCTGCAGGGGGTGGCCAGCGGGGGGCCAGAAGG
AGACCTGCTGTATACCCAGATGCTCTACTTCTTTGATCTGCAGGGGGTGG
CCAGCGGGGGGCCAGAAGGAGACCTGCTGTATACCCAGGGCATCGCAGCC
GTGCCCGGGCGGAGTCACTTCTTGGTGGGGTGCAGCGACGGCTGCGCTTT
TGTCTTCTCCGTGCGGGGCATCGCAGCCGTGCCCGGGCGGAGTCACTTCT
TGGTGGGGTGCAGCGACGGCTGCGCTTTTGTCTTCTCCGTGCGG
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