mRNA_S-ischiensis_contig10.1656.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1656.1
Unique NamemRNA_S-ischiensis_contig10.1656.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3533472..3533948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size479
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.3256888-CDS-S-ischiensis_contig10:3533471..35338461622815506.3256888-CDS-S-ischiensis_contig10:3533471..3533846Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3533472..3533846 +
1695739738.5295246-CDS-S-ischiensis_contig10:3533471..35338461695739738.5295246-CDS-S-ischiensis_contig10:3533471..3533846Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3533472..3533846 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.3371916-UTR-S-ischiensis_contig10:3533846..35339481622815506.3371916-UTR-S-ischiensis_contig10:3533846..3533948Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3533847..3533948 +
1695739738.5391345-UTR-S-ischiensis_contig10:3533846..35339481695739738.5391345-UTR-S-ischiensis_contig10:3533846..3533948Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3533847..3533948 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1656.1prot_S-ischiensis_contig10.1656.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 3533472..3533846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1656.1

>prot_S-ischiensis_contig10.1656.1 ID=prot_S-ischiensis_contig10.1656.1|Name=mRNA_S-ischiensis_contig10.1656.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=125bp
QTGRRRQRRRRWDGGAGGERGCTCKYESVVAAVRPLNTGASCRNGPVVGG
SAFSSVIGEAGYGRSLRGSGAEGRRRSIVSQCTHSYEYLSLGRTRSMVWG
LRPAQLEYVFVRTSVRQGRNPPPP*
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mRNA from alignment at S-ischiensis_contig10:3533472..3533948+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1656.1 ID=mRNA_S-ischiensis_contig10.1656.1|Name=mRNA_S-ischiensis_contig10.1656.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=477bp|location=Sequence derived from alignment at S-ischiensis_contig10:3533472..3533948+ (Schizocladia ischiensis KU_0333)
CAAACTGGGCGGCGGCGGCAGCGGCGGCGGCGGTGGGATGGGGGGGCAGG
GGGCGAGAGGGGGTGCACTTGCAAATACGAGTCGGTTGTCGCAGCCGTAC
GGCCATTAAACACCGGGGCGTCCTGTAGGAATGGACCGGTCGTGGGGGGT
AGCGCCTTTTCCTCTGTCATTGGGGAGGCGGGCTACGGCCGCTCGCTCCG
TGGGAGCGGTGCGGAAGGAAGGAGAAGGAGCATTGTGAGTCAATGTACGC
ACTCGTACGAGTACTTGAGTCTCGGGCGCACAAGGTCAATGGTCTGGGGA
CTACGGCCAGCACAGCTTGAGTACGTATTTGTGCGAACCTCGGTCCGGCA
GGGGAGGAACCCGCCCCCGCCCTGACTCTCACGAGTCAGGCGAGGGGGGA
GTATGGACCCAACCACTCCCCCGCCATGAGCGGGGGGGTGGTCCCTCCCC
CCCACCCTGGCTTGCCAGGGGCGGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:3533472..3533948+

>mRNA_S-ischiensis_contig10.1656.1 ID=mRNA_S-ischiensis_contig10.1656.1|Name=mRNA_S-ischiensis_contig10.1656.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=750bp|location=Sequence derived from alignment at S-ischiensis_contig10:3533472..3533948+ (Schizocladia ischiensis KU_0333)
CAAACTGGGCGGCGGCGGCAGCGGCGGCGGCGGTGGGATGGGGGGGCAGG
GGGCGAGAGGGGGTGCACTTGCAAATACGAGTCGGTTGTCGCAGCCGTAC
GGCCATTAAACACCGGGGCGTCCTGTAGGAATGGACCGGTCGTGGGGGGT
AGCGCCTTTTCCTCTGTCATTGGGGAGGCGGGCTACGGCCGCTCGCTCCG
TGGGAGCGGTGCGGAAGGAAGGAGAAGGAGCATTGTGAGTCAATGTACGC
ACTCGTACGAGTACTTGAGTCTCGGGCGCACAAGGTCAATGGTCTGGGGA
CTACGGCCAGCACAGCTTGAGTACGTATTTGTGCGAACCTCGGTCCGGCA
GGGGAGGAACCCGCCCCCGCCCTGACAAACTGGGCGGCGGCGGCAGCGGC
GGCGGCGGTGGGATGGGGGGGCAGGGGGCGAGAGGGGGTGCACTTGCAAA
TACGAGTCGGTTGTCGCAGCCGTACGGCCATTAAACACCGGGGCGTCCTG
TAGGAATGGACCGGTCGTGGGGGGTAGCGCCTTTTCCTCTGTCATTGGGG
AGGCGGGCTACGGCCGCTCGCTCCGTGGGAGCGGTGCGGAAGGAAGGAGA
AGGAGCATTGTGAGTCAATGTACGCACTCGTACGAGTACTTGAGTCTCGG
GCGCACAAGGTCAATGGTCTGGGGACTACGGCCAGCACAGCTTGAGTACG
TATTTGTGCGAACCTCGGTCCGGCAGGGGAGGAACCCGCCCCCGCCCTGA
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