mRNA_S-ischiensis_contig10.1589.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1589.1
Unique NamemRNA_S-ischiensis_contig10.1589.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:2939329..2940193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size424
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815499.5883715-CDS-S-ischiensis_contig10:2939329..29396241622815499.5883715-CDS-S-ischiensis_contig10:2939329..2939624Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2939330..2939624 -
1695739736.3221562-CDS-S-ischiensis_contig10:2939329..29396241695739736.3221562-CDS-S-ischiensis_contig10:2939329..2939624Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2939330..2939624 -
1622815499.5993335-CDS-S-ischiensis_contig10:2940065..29401931622815499.5993335-CDS-S-ischiensis_contig10:2940065..2940193Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2940066..2940193 -
1695739736.3347666-CDS-S-ischiensis_contig10:2940065..29401931695739736.3347666-CDS-S-ischiensis_contig10:2940065..2940193Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2940066..2940193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1589.1prot_S-ischiensis_contig10.1589.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 2939330..2940193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1589.1

>prot_S-ischiensis_contig10.1589.1 ID=prot_S-ischiensis_contig10.1589.1|Name=mRNA_S-ischiensis_contig10.1589.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=141bp
GTAGCGRGRRLPAAWRGRCAPTSGRPSGTSWRCGPGNSSLTCRSGWWMGA
RTPTPSAARPGWPRSAASCLPAARTPSPRRCGPSQAWPSTPAAPLGPAAS
SSTPWPSPFPRCPRLPKPPSVIASWSGWGNKPRAPRARAPP
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mRNA from alignment at S-ischiensis_contig10:2939329..2940193-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1589.1 ID=mRNA_S-ischiensis_contig10.1589.1|Name=mRNA_S-ischiensis_contig10.1589.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=865bp|location=Sequence derived from alignment at S-ischiensis_contig10:2939329..2940193- (Schizocladia ischiensis KU_0333)
GGCACGGCGGGGTGCGGGCGGGGGCGGAGGCTGCCTGCCGCATGGCGGGG
GCGCTGTGCTCCGACGTCGGGGCGGCCCTCGGGCACTTCCTGGCGCTGCG
GGCCAGGGAACAGTTCCCTGACGTGCAGGTGAGTGCCGCGTGCAATCCTA
TGCATCATACTTAGATGCGGGGGGGGCGGCGTTGCGAGCCCGGTGATTGT
TCCGGTCCAAGGGTATGCTAGGTCCCGCGACATGCAGCGCCTGCCGGTGT
CTCGCCGTCGCCCCTACGTGATGCCGCGGGCAGCCCCGTCGCTGCAAACA
CAGCCTGGTGAGTTTGACGGCCGCTGATGGCGGGGTCCCCCCCGCCTTGC
CCCTCGCGCAGTCCAGTTGGCGAGTACGGTGAAAACCCTTCTCCGCTGCC
TGTGGCGACAAGGAACGGAGAGACCGGCCGTGGCTAGTCCGCCCCAACAA
CCGAGGAATCAGTGGTCCGTCCCATTAGGGTCACCCCTGTGGGACGCGCT
ATGATCCATGTTGACACGGGTACGGCTGACAAGCAACTCAGGAGGCCCCC
GGCCGCCAAAAACGAACAGGTCTGGCTGGTGGATGGGTGCACGCACCCCC
ACCCCTTCTGCCGCGAGGCCTGGCTGGCCGCGCTCCGCGGCTTCCTGTCT
GCCTGCGGCCCGGACGCCCAGTCCACGGCGCTGTGGACCGTCGCAGGCCT
GGCCCTCGACCCCGGCTGCGCCGCTTGGCCCCGCCGCCTCCTCATCCACG
CCGTGGCCGTCTCCCTTCCCGCGCTGTCCCCGCCTGCCGAAGCCGCCCTC
TGTGATCGCCTCCTGGAGCGGCTGGGGCAACAAGCCCCGGGCGCCCAGGG
CCAGGGCCCCGCCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:2939329..2940193-

>mRNA_S-ischiensis_contig10.1589.1 ID=mRNA_S-ischiensis_contig10.1589.1|Name=mRNA_S-ischiensis_contig10.1589.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=846bp|location=Sequence derived from alignment at S-ischiensis_contig10:2939329..2940193- (Schizocladia ischiensis KU_0333)
GGCACGGCGGGGTGCGGGCGGGGGCGGAGGCTGCCTGCCGCATGGCGGGG
GCGCTGTGCTCCGACGTCGGGGCGGCCCTCGGGCACTTCCTGGCGCTGCG
GGCCAGGGAACAGTTCCCTGACGTGCAGGGCACGGCGGGGTGCGGGCGGG
GGCGGAGGCTGCCTGCCGCATGGCGGGGGCGCTGTGCTCCGACGTCGGGG
CGGCCCTCGGGCACTTCCTGGCGCTGCGGGCCAGGGAACAGTTCCCTGAC
GTGCAGGTCTGGCTGGTGGATGGGTGCACGCACCCCCACCCCTTCTGCCG
CGAGGCCTGGCTGGCCGCGCTCCGCGGCTTCCTGTCTGCCTGCGGCCCGG
ACGCCCAGTCCACGGCGCTGTGGACCGTCGCAGGCCTGGCCCTCGACCCC
GGCTGCGCCGCTTGGCCCCGCCGCCTCCTCATCCACGCCGTGGCCGTCTC
CCTTCCCGCGCTGTCCCCGCCTGCCGAAGCCGCCCTCTGTGATCGCCTCC
TGGAGCGGCTGGGGCAACAAGCCCCGGGCGCCCAGGGCCAGGGCCCCGCC
GGTCTGGCTGGTGGATGGGTGCACGCACCCCCACCCCTTCTGCCGCGAGG
CCTGGCTGGCCGCGCTCCGCGGCTTCCTGTCTGCCTGCGGCCCGGACGCC
CAGTCCACGGCGCTGTGGACCGTCGCAGGCCTGGCCCTCGACCCCGGCTG
CGCCGCTTGGCCCCGCCGCCTCCTCATCCACGCCGTGGCCGTCTCCCTTC
CCGCGCTGTCCCCGCCTGCCGAAGCCGCCCTCTGTGATCGCCTCCTGGAG
CGGCTGGGGCAACAAGCCCCGGGCGCCCAGGGCCAGGGCCCCGCCG
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