mRNA_S-ischiensis_contig1.1183.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1183.1
Unique NamemRNA_S-ischiensis_contig1.1183.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1183.1 vs. uniprot
Match: D7FNT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT9_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.110e-29
Identity = 76/195 (38.97%), Postives = 106/195 (54.36%), Query Frame = 2 
Query:  344 KTPISEEVKEEINTAIKILTARMNQDTPVEQSEFFRLRRAVHVILEDALP------QGGGAPLEGAPQAAAPSLQLGQVVSAGDNEGDEV------ENEGPTWDGKG--YGMVKETVNTYHVEGMGAMTPDDYQQALRDKVVRRAQKARESGMYGNVAANDYLRFLSGAPTYGDEEVENRQT-----KDEDFKNY 871
            ++P SE ++EE+  AIKIL AR+ ++ P+ + EF R   AV VI+EDALP          A  E A   AA   +L    S   N           E EGP WD +   YG+     NTY ++ M  M P++YQ ALR+KVV RAQ  R++G YGN+ +N+YL+FL   P  GDE+ +  +        EDF++Y
Sbjct:    6 ESPFSESLQEELRVAIKILAARLQREKPMSRQEFERFESAVGVIVEDALPLQKLPSPASPASXEAAXXXAAAPPRLAVTQSPVPNADSXXXXXXXFETEGPEWDAEKVQYGLPMGARNTYDIDDMEKMNPEEYQAALREKVVERAQSVRKTGSYGNIVSNEYLKFLGKNPKTGDEKFKKNEEFVKSKGREDFRSY 200
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BLAST of mRNA_S-ischiensis_contig1.1183.1 vs. uniprot
Match: A0A836C7S9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7S9_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.210e-28
Identity = 84/241 (34.85%), Postives = 123/241 (51.04%), Query Frame = 2 
Query:  176 MQAAGSYAERLRQARAARAQGGGGTPVEPPGSAASPVPVGQAGGQADPAEGRARPGKTPISEEVKEEINTAIKILTARMNQDTPVEQSEFFRLRRAVHVILEDALPQGGGAPLEGAPQAAAPSLQLGQVVSAGDN--------EGDEVENEGPTWDG-KGYGMVKETVNTYHVEGMGAMTPDDYQQALRDKVVRRAQKARESGMYGNVAANDYLRFLSGAPTYGDEEVENRQTKDEDFKNY 871
            MQ++GSY ERL+ A+ A+A          P +A +P         ++P    A     P ++E++E + TAI +L+ R+    P+ + EF R   A+  I++DA+P    A                                EG  +E+EGP WD  KGYGM     N+Y ++GM  M+PDDYQ ALR+KV++R  KAR++G YGN AAN YL FL  +PT+   +V+     +EDF  Y
Sbjct:   36 MQSSGSYMERLKAAQEAKAAK---KQAAAPPAAVAPATXXXVAAVSEPLSAAA----APFTDEMQEHLQTAINLLSRRLKSGVPLNRPEFDRFEEAIDAIIKDAVPHLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEG--MESEGPAWDASKGYGMPVGVRNSYTIDGMDDMSPDDYQAALREKVLKRVTKARKTGNYGNRAANAYLSFLDKSPTW---DVKEEAEPEEDFTEY 264
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BLAST of mRNA_S-ischiensis_contig1.1183.1 vs. uniprot
Match: A0A7S0BY33_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BY33_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.490e-7
Identity = 28/68 (41.18%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:  599 NEGPTWDGKG-YGMVKETVNTYHVEGMGAMTPDDYQQALRDKVVRRAQKARESGMYGNVAANDYLRFL 799
            +EGP + GKG  G+   T NTY +EGM  M+P++Y++AL+  +  R  K RE+G +GN+++ +YL  +
Sbjct:  142 DEGPAYTGKGGMGLASGTKNTYVIEGMDEMSPEEYREALQGSISARQDKRRETGTFGNMSSENYLSAI 209
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BLAST of mRNA_S-ischiensis_contig1.1183.1 vs. uniprot
Match: A0A7S1UWT3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWT3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 7.880e-6
Identity = 31/85 (36.47%), Postives = 49/85 (57.65%), Query Frame = 2 
Query:  599 NEGPTWDGKGYGMVKETVNTYHVEGMGAMTPDDYQQALRDKVVRRAQKARESGMYGNVAANDYLRFLSGAPTYGDEEVENRQTKD 853
            +EGP + G   G    T NTY ++GM  M+P++Y+QAL+  VV + ++ R+SGM GN  +  Y+  LS +   G  + E  +  D
Sbjct:  155 DEGPAYTGT-MGQPAGTRNTYVIDGMDEMSPEEYRQALQQSVVAKQRERRKSGMAGNYGSLSYMNSLSNSGDTGSLKHEILEKDD 238
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FNT9_ECTSI1.110e-2938.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C7S9_9STRA1.210e-2834.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0BY33_9STRA1.490e-741.18Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1UWT3_9STRA7.880e-636.47Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7980145..7981186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue2.2e-26
Seed eggNOG ortholog2880.D7FNT9
EggNOG OGs2EA2C@1,2SGBW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_003400.1
Exons1
Model size1042
Cds size825
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1183.1prot_S-ischiensis_contig1.1183.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7980194..7981018 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.853471-UTR-S-ischiensis_contig1:7980144..79801931622815488.853471-UTR-S-ischiensis_contig1:7980144..7980193Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7980145..7980193 +
1695739730.7034538-UTR-S-ischiensis_contig1:7980144..79801931695739730.7034538-UTR-S-ischiensis_contig1:7980144..7980193Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7980145..7980193 +
1622815488.8772442-UTR-S-ischiensis_contig1:7981018..79811861622815488.8772442-UTR-S-ischiensis_contig1:7981018..7981186Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7981019..7981186 +
1695739730.7260451-UTR-S-ischiensis_contig1:7981018..79811861695739730.7260451-UTR-S-ischiensis_contig1:7981018..7981186Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7981019..7981186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.865433-CDS-S-ischiensis_contig1:7980193..79810181622815488.865433-CDS-S-ischiensis_contig1:7980193..7981018Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7980194..7981018 +
1695739730.7157829-CDS-S-ischiensis_contig1:7980193..79810181695739730.7157829-CDS-S-ischiensis_contig1:7980193..7981018Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7980194..7981018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1183.1

>prot_S-ischiensis_contig1.1183.1 ID=prot_S-ischiensis_contig1.1183.1|Name=mRNA_S-ischiensis_contig1.1183.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=275bp
MMRAIWRAVAVSGLVWAAHGFVSHGGLPGPRTRVRGHGARLGMQAAGSYA
ERLRQARAARAQGGGGTPVEPPGSAASPVPVGQAGGQADPAEGRARPGKT
PISEEVKEEINTAIKILTARMNQDTPVEQSEFFRLRRAVHVILEDALPQG
GGAPLEGAPQAAAPSLQLGQVVSAGDNEGDEVENEGPTWDGKGYGMVKET
VNTYHVEGMGAMTPDDYQQALRDKVVRRAQKARESGMYGNVAANDYLRFL
SGAPTYGDEEVENRQTKDEDFKNY*
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mRNA from alignment at S-ischiensis_contig1:7980145..7981186+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1183.1 ID=mRNA_S-ischiensis_contig1.1183.1|Name=mRNA_S-ischiensis_contig1.1183.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1042bp|location=Sequence derived from alignment at S-ischiensis_contig1:7980145..7981186+ (Schizocladia ischiensis KU_0333)
CGGAGATGGGGTTGAAATTGAGGCTTGCAGCGCGCCAGTGCAGCTGTGCA
TGATGAGGGCAATTTGGCGCGCCGTGGCGGTCTCCGGGCTTGTCTGGGCT
GCCCACGGGTTTGTCTCTCACGGGGGTCTTCCGGGGCCACGAACACGAGT
CCGGGGACATGGAGCACGGTTGGGGATGCAAGCTGCTGGATCATATGCCG
AGAGGCTGCGGCAGGCCCGCGCAGCGCGCGCCCAGGGCGGGGGGGGCACC
CCCGTTGAGCCTCCCGGTTCTGCAGCGTCACCGGTGCCTGTTGGGCAGGC
AGGAGGTCAAGCTGATCCTGCGGAGGGGCGGGCGCGGCCAGGCAAGACAC
CCATCTCGGAGGAGGTGAAGGAGGAGATCAACACGGCTATCAAGATCCTG
ACCGCGCGAATGAACCAAGACACGCCCGTGGAGCAGTCCGAGTTCTTCCG
GCTCCGACGTGCTGTTCATGTTATCTTGGAGGACGCTCTCCCGCAGGGTG
GGGGGGCGCCTCTTGAGGGGGCGCCCCAGGCGGCGGCTCCGTCTTTGCAA
CTGGGGCAAGTTGTCAGTGCCGGCGATAATGAAGGCGATGAGGTTGAGAA
CGAAGGCCCAACTTGGGATGGTAAGGGCTACGGAATGGTGAAGGAAACGG
TCAACACTTACCACGTTGAAGGCATGGGGGCCATGACGCCGGACGACTAC
CAGCAGGCCCTCCGGGACAAGGTCGTCCGGCGGGCACAGAAAGCCCGAGA
GTCGGGCATGTACGGAAACGTCGCTGCCAATGACTACCTACGCTTTCTCA
GCGGCGCGCCCACGTACGGCGACGAGGAAGTTGAAAACCGCCAGACGAAA
GACGAAGACTTCAAGAACTACTGAGCTTGCTGTGAGTGCAGAAGGCGCTG
TGGTTGTACTGAAGTTTTCCGGTAGTTTGGGACAGTCTGCCTGATTTTGG
GGGGGCGACATGTGTGCGCCCTTGCGGGCTCCGCCTGAACCAGTAGGAGG
ATTTCAGGTTGCGAGCTAATAACTTGAGAGCGATGTTTCATG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7980145..7981186+

>mRNA_S-ischiensis_contig1.1183.1 ID=mRNA_S-ischiensis_contig1.1183.1|Name=mRNA_S-ischiensis_contig1.1183.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1650bp|location=Sequence derived from alignment at S-ischiensis_contig1:7980145..7981186+ (Schizocladia ischiensis KU_0333)
ATGATGAGGGCAATTTGGCGCGCCGTGGCGGTCTCCGGGCTTGTCTGGGC
TGCCCACGGGTTTGTCTCTCACGGGGGTCTTCCGGGGCCACGAACACGAG
TCCGGGGACATGGAGCACGGTTGGGGATGCAAGCTGCTGGATCATATGCC
GAGAGGCTGCGGCAGGCCCGCGCAGCGCGCGCCCAGGGCGGGGGGGGCAC
CCCCGTTGAGCCTCCCGGTTCTGCAGCGTCACCGGTGCCTGTTGGGCAGG
CAGGAGGTCAAGCTGATCCTGCGGAGGGGCGGGCGCGGCCAGGCAAGACA
CCCATCTCGGAGGAGGTGAAGGAGGAGATCAACACGGCTATCAAGATCCT
GACCGCGCGAATGAACCAAGACACGCCCGTGGAGCAGTCCGAGTTCTTCC
GGCTCCGACGTGCTGTTCATGTTATCTTGGAGGACGCTCTCCCGCAGGGT
GGGGGGGCGCCTCTTGAGGGGGCGCCCCAGGCGGCGGCTCCGTCTTTGCA
ACTGGGGCAAGTTGTCAGTGCCGGCGATAATGAAGGCGATGAGGTTGAGA
ACGAAGGCCCAACTTGGGATGGTAAGGGCTACGGAATGGTGAAGGAAACG
GTCAACACTTACCACGTTGAAGGCATGGGGGCCATGACGCCGGACGACTA
CCAGCAGGCCCTCCGGGACAAGGTCGTCCGGCGGGCACAGAAAGCCCGAG
AGTCGGGCATGTACGGAAACGTCGCTGCCAATGACTACCTACGCTTTCTC
AGCGGCGCGCCCACGTACGGCGACGAGGAAGTTGAAAACCGCCAGACGAA
AGACGAAGACTTCAAGAACTACTGAATGATGAGGGCAATTTGGCGCGCCG
TGGCGGTCTCCGGGCTTGTCTGGGCTGCCCACGGGTTTGTCTCTCACGGG
GGTCTTCCGGGGCCACGAACACGAGTCCGGGGACATGGAGCACGGTTGGG
GATGCAAGCTGCTGGATCATATGCCGAGAGGCTGCGGCAGGCCCGCGCAG
CGCGCGCCCAGGGCGGGGGGGGCACCCCCGTTGAGCCTCCCGGTTCTGCA
GCGTCACCGGTGCCTGTTGGGCAGGCAGGAGGTCAAGCTGATCCTGCGGA
GGGGCGGGCGCGGCCAGGCAAGACACCCATCTCGGAGGAGGTGAAGGAGG
AGATCAACACGGCTATCAAGATCCTGACCGCGCGAATGAACCAAGACACG
CCCGTGGAGCAGTCCGAGTTCTTCCGGCTCCGACGTGCTGTTCATGTTAT
CTTGGAGGACGCTCTCCCGCAGGGTGGGGGGGCGCCTCTTGAGGGGGCGC
CCCAGGCGGCGGCTCCGTCTTTGCAACTGGGGCAAGTTGTCAGTGCCGGC
GATAATGAAGGCGATGAGGTTGAGAACGAAGGCCCAACTTGGGATGGTAA
GGGCTACGGAATGGTGAAGGAAACGGTCAACACTTACCACGTTGAAGGCA
TGGGGGCCATGACGCCGGACGACTACCAGCAGGCCCTCCGGGACAAGGTC
GTCCGGCGGGCACAGAAAGCCCGAGAGTCGGGCATGTACGGAAACGTCGC
TGCCAATGACTACCTACGCTTTCTCAGCGGCGCGCCCACGTACGGCGACG
AGGAAGTTGAAAACCGCCAGACGAAAGACGAAGACTTCAAGAACTACTGA
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