mRNA_S-ischiensis_contig1.1176.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-ischiensis_contig1.1176.1
Unique Name	mRNA_S-ischiensis_contig1.1176.1
Type	mRNA
Organism	Schizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)

Homology

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BLAST of mRNA_S-ischiensis_contig1.1176.1 vs. uniprot
Match: A0A7S4D4A0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4A0_HETAK)

HSP 1 Score: 135 bits (340), Expect = 5.090e-33
Identity = 73/144 (50.69%), Postives = 98/144 (68.06%), Query Frame = 1

Query:  277 PGYETVPPMEELSRMSAAQLSAVAGFAVRRPGIGSVEWLMP-VDLRGVDLARTVSIQKKSVAVYDDLEEPSDKPPVGKGLNRPARVTLEGVLPSRRAPPEKARNYAAQVAAKTKESGAELESYDQETGRWVFRTLHFSKYGMDD 705
            PGY T PP+ EL+R+ AA L+A+  F V R G G+++W    +D+RG+DL R V I+ ++ AVY+ +EE   KPPVG+GLNRPA +TLEGVLP   A P K   +AA+V  +T++ GAE   YD   G W FRT HFS+YG+ D
Sbjct:   19 PGYYTEPPLAELARLPAAALAALPAFLVGRRGAGAIKWEGGGLDVRGLDLDRLVQIEDRAAAVYEGMEEV--KPPVGQGLNRPALITLEGVLPPEGADPAK---FAAKVEKRTRKMGAEFVDYDPARGIWQFRTPHFSRYGLAD 157

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BLAST of mRNA_S-ischiensis_contig1.1176.1 vs. uniprot
Match: A0A1Z5JQP4_FISSO (Nuclear pore complex protein Nup98-Nup96 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQP4_FISSO)

HSP 1 Score: 126 bits (317), Expect = 4.220e-27
Identity = 68/145 (46.90%), Postives = 87/145 (60.00%), Query Frame = 1

Query:  277 PGYETVPPMEELSRMSAAQLSAVAGFAVRRPGIGSVEWLMPVDLRGVDLARTVSIQKKSVAVYDDLEEPSDKPPVGKGLNRPARVTLEGVLP--SRRAPPEKARNYAAQVAAKTKESGAELESYDQETGRWVFRTLHFSKYGMDD 705
            PGYE  P +E++ RMS A L+ VA F+VRR G+G VEW   VD+RG DL   +SI+ K+V VY   EE   KP VG  LNRPA +T   V P   R A  E+   YA +V  +T   GAEL  Y++ +G W  R  HFS+Y + D
Sbjct:  799 PGYEVSPSIEDMKRMSEADLATVAAFSVRRTGVGMVEWEGAVDIRGADLDSIISIEPKAVEVYSLEEEQGTKPAVGSKLNRPAIITCYDVFPPAGRNASEEERNRYAQKVVMRTTNMGAELIDYNKNSGVWKIRVQHFSRYALVD 943

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BLAST of mRNA_S-ischiensis_contig1.1176.1 vs. uniprot
Match: A0A7S3KXU9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KXU9_9STRA)

HSP 1 Score: 126 bits (316), Expect = 5.610e-27
Identity = 68/143 (47.55%), Postives = 87/143 (60.84%), Query Frame = 1

Query:  283 YETVPPMEELSRMSAAQLSAVAGFAVRRPGIGSVEWLMPVDLRGVDLARTVSIQKKSVAVYDDLEEPSDKPPVGKGLNRPARVTLEGVLPSRRAPPEKAR--NYAAQVAAKTKESGAELESYDQETGRWVFRTLHFSKYGMDD 705
            YET P +EEL + S A L+AV  F VRRPG G V W   VD+RGVDL R VSIQKK V+VY + E+   KP VG  LNRPA +T E V P   A   KA    +  ++  + ++ GA+   Y++ TG W  R  HFS+YG+ D
Sbjct:  757 YETSPSIEELGKKSEADLAAVENFVVRRPGFGEVAWEGSVDVRGVDLDRVVSIQKKDVSVYSEEEDEGTKPRVGTKLNRPAVITYEEVYPGDDAQASKATMDKFVVKLQKRCEKMGADHVGYERSTGTWKIRVSHFSRYGLYD 899

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BLAST of mRNA_S-ischiensis_contig1.1176.1 vs. uniprot
Match: K0S9G7_THAOC (Peptidase S59 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S9G7_THAOC)

HSP 1 Score: 125 bits (314), Expect = 9.840e-27
Identity = 68/146 (46.58%), Postives = 90/146 (61.64%), Query Frame = 1

Query:  280 GYETVPPMEELSRMSAAQLSAVAGFAVRRPGIGSVEWLMPVDLRGVDLARTVSIQKKSVAVYDDLEEPSDKPPVGKGLNRPARVTLEGVLPSRRAPPEKARNYAAQVAAK----TKESGAELESYDQETGRWVFRTLHFSKYGMDD 705
            GY   PPM EL  MS A L+AV+GF V RPG GSV W   VD+RGVD+  +V I+ K+V+VYDD EE  +KPP G  LNRPA + +  + P  +  PE +     ++  K    TK+  AEL S+D + G W FR  HFS+YG+ +
Sbjct:  658 GYTIHPPMNELESMSEADLTAVSGFKVERPGFGSVSWDGAVDVRGVDVDTSVVIEAKNVSVYDDEEEKGEKPPRGTKLNRPAVIIMNDIYP--KDGPESSHEAKEKLKRKIDKSTKKMNAELLSFDADAGVWTFRVGHFSRYGLSE 801

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BLAST of mRNA_S-ischiensis_contig1.1176.1 vs. uniprot
Match: A0A7S3XQH8_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQH8_HETAK)

HSP 1 Score: 110 bits (275), Expect = 2.240e-25
Identity = 61/125 (48.80%), Postives = 82/125 (65.60%), Query Frame = 1

Query:  310 LSRMSAAQLSAVAGFAVRRPGIGSVEWLMPVDLRGVDLARTVSIQKKSVAVYDDLEEPSDKPPVGKGLNRPARVTLEGVLPSRRAPPEKARNYAAQVAAKTKESGAELESYDQETGRWVFRTLHF 684
            ++ M AA L+A+  FAV R G+G+V W   VD+RG+DL   V+I+ ++VAVY+ + E  +KPP G+GLNRPA VTLEGV P       K   +AA+V  +T++ GAE   YD E G W FRT HF
Sbjct:    1 MAAMGAAALAALPAFAVARRGVGAVRWEGGVDVRGLDLDALVAIEDRAVAVYEGVAE-EEKPPRGRGLNRPALVTLEGVTPPVGVDGAK---FAAKVERRTRKMGAEFVGYDVERGVWRFRTQHF 121

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BLAST of mRNA_S-ischiensis_contig1.1176.1 vs. uniprot
Match: A0A383VN41_TETOB (Peptidase S59 domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VN41_TETOB)

HSP 1 Score: 112 bits (279), Expect = 2.860e-22
Identity = 65/150 (43.33%), Postives = 90/150 (60.00%), Query Frame = 1

Query:  280 GYETVPPMEELSRMSA---AQLSAVAGFAVRRPGIGSVEWLMPVDLRGVDLARTVSIQKKSVAVYDDLEEPSD--KPPVGKGLNRPARVTLEGVLPSRRAPPEK-----ARNYAAQVAAKTKESGAELESYDQETGRWVFRTLHFSKYGM 699
            GY T P  +EL  ++A   A LS ++GF V RPG G++EWL PVD+RGVDL   +SI++  VAVY    E ++  KPPVG GLN   +VTL GV+  ++A P++     A  +  ++A    E GA    Y  E G W+F   HFS+YG+
Sbjct:  822 GYSTEPGGKELQALAAQNPAALSRLSGFRVERPGYGTLEWLAPVDVRGVDLGEIISIERGEVAVYMSSSEGAEPTKPPVGSGLNTACKVTLTGVM--KKAKPQQSAAAVAAAFRKRLARYCSEMGARFIDYKPEGGIWIFEVDHFSRYGV 969

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BLAST of mRNA_S-ischiensis_contig1.1176.1 vs. uniprot
Match: A0A2P6TXK9_CHLSO (Nuclear pore complex NUP98A isoform X1 isoform C n=3 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TXK9_CHLSO)

HSP 1 Score: 110 bits (276), Expect = 6.800e-22
Identity = 68/153 (44.44%), Postives = 86/153 (56.21%), Query Frame = 1

Query:  277 PGYETVPPMEELSRMSA---AQLSAVAGFAVRRPGIGSVEWLMPVDLRGVDLARTVSIQKKSVAVYDDLEEPSDKPPVGKGLNRPARVTL--------EGVLPSRRAPPEKARNYAAQVAAKTKESGAELESYDQETGRWVFRTLHFSKYGMD 702
            P Y T P +++L+ M+    A L++VA F V R G+GSV WL P D+RG+DL  TV + K S+ VY D    S KP VG GLN+PA VT+        E   PS    PE    YA ++   T E GA   SYD  +G W F   HFSKYG+D
Sbjct:  782 PDYYTEPSLQQLAAMARDDPASLASVANFVVGRRGVGSVRWLEPTDVRGLDLDGTVQMSKGSIEVYLD---DSTKPEVGHGLNKPAEVTMLRVHKIDKETGKPS--TDPEAIDRYARRLKKVTAEQGARFVSYDATSGTWKFEVEHFSKYGLD 929

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BLAST of mRNA_S-ischiensis_contig1.1176.1 vs. uniprot
Match: A0A6J1W9W0_9SAUR (nuclear pore complex protein Nup98-Nup96-like n=1 Tax=Notechis scutatus TaxID=8663 RepID=A0A6J1W9W0_9SAUR)

HSP 1 Score: 105 bits (261), Expect = 9.680e-22
Identity = 61/151 (40.40%), Postives = 90/151 (59.60%), Query Frame = 1

Query:  280 GYETVPPMEELSRMSAAQLSAVA-GFAVRRPGIGSVEWLMPVDLRGVDLARTVSIQKKSVAVYDDLEEPSDKPPVGKGLNRPARVTLEGVLPSRRAP------PEKAR--NYAAQVAAKTKESGAELESYDQETGRWVFRTLHFSKYGMDD 705
            GY T+P +EEL+RM++     +   F V R G GS+ +   V+L  ++L   V +++K V VY D E    KPP+G+GLNR A VTL+GV P+ +        PE+    NY  ++ A +++ GA+ + Y  ETG WVF+  HFSKYG+ D
Sbjct:   86 GYYTIPSLEELARMTSDTGECIVMDFTVGRKGYGSIYFEGEVNLTNLNLDEIVHVRRKEVIVYPDDEL---KPPIGEGLNRRAEVTLDGVWPTDKTSRCLIKSPERLTEMNYEGRLEAVSRKQGAQFKEYRPETGSWVFKVAHFSKYGLQD 233

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BLAST of mRNA_S-ischiensis_contig1.1176.1 vs. uniprot
Match: A0A1D1ZWB9_AUXPR (Peptidase S59 domain-containing protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZWB9_AUXPR)

HSP 1 Score: 110 bits (274), Expect = 9.820e-22
Identity = 68/152 (44.74%), Postives = 88/152 (57.89%), Query Frame = 1

Query:  277 PGYETVPPMEELS---RMSAAQLSAVAGFAVRRPGIGSVEWLMPVDLRGVDLARTVSIQKKSVAVYDDLEEPSDKPPVGKGLNRPARVTLEGVLPSRRAPPEKARNYAA------QVAAKTKESGAELESYDQETGRWVFRTLHFSKYGMDD 705
            P Y TVP + EL+   R   A  +AV  F V R G+GSV WL PVD+RG+DL   ++I +  V VY  LE P+ KPPVG GLNRPA VT+  +  + +A  +   N AA      ++   T E GA+  SYD  TG W F   HFS+YG+ D
Sbjct:  821 PDYYTVPSLAELAAAARSDPAAAAAVPEFVVGRRGLGSVAWLEPVDVRGLDLDDVITISRGGVEVY--LEGPA-KPPVGAGLNRPAEVTMLKIFKTDKATGQPVTNAAAVESFTRKLKRVTAEQGAQFVSYDPRTGTWRFTVEHFSRYGLFD 969

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BLAST of mRNA_S-ischiensis_contig1.1176.1 vs. uniprot
Match: A0A670IDK0_PODMU (Nuclear pore complex protein Nup98-Nup96 n=19 Tax=Lacertinae TaxID=162266 RepID=A0A670IDK0_PODMU)

HSP 1 Score: 110 bits (274), Expect = 1.140e-21
Identity = 63/151 (41.72%), Postives = 92/151 (60.93%), Query Frame = 1

Query:  280 GYETVPPMEELSRMSAAQLSA-VAGFAVRRPGIGSVEWLMPVDLRGVDLARTVSIQKKSVAVYDDLEEPSDKPPVGKGLNRPARVTLEGVLPSRRAP------PEKAR--NYAAQVAAKTKESGAELESYDQETGRWVFRTLHFSKYGMDD 705
            GY T+P MEEL++M++ +    V  F + R G GS+ +   V+L  ++L   V I++K V VY D E+   KPP+GKGLNR A VTL+GV P+ +        PE+    NY  ++ A +++ GA+ + Y  ETG WVF+  HFSKYG+ D
Sbjct:  728 GYYTIPSMEELAKMTSDKGECIVTDFTIGRKGYGSIYFEGEVNLTNLNLDEIVHIRRKEVIVYPDDEQ---KPPIGKGLNRRAEVTLDGVWPTDKTSRCLIKSPERLTEMNYEGRLEAVSRKQGAQFKEYRSETGSWVFKVAHFSKYGLQD 875

The following BLAST results are available for this feature:

BLAST of mRNA_S-ischiensis_contig1.1176.1 vs. uniprot

BLAST of mRNA_S-ischiensis_contig1.1176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S4D4A0_HETAK	5.090e-33	50.69	Hypothetical protein (Fragment) n=2 Tax=Heterosigm...	[more]
A0A1Z5JQP4_FISSO	4.220e-27	46.90	Nuclear pore complex protein Nup98-Nup96 n=2 Tax=F...	[more]
A0A7S3KXU9_9STRA	5.610e-27	47.55	Hypothetical protein n=1 Tax=Amphora coffeiformis ...	[more]
K0S9G7_THAOC	9.840e-27	46.58	Peptidase S59 domain-containing protein n=1 Tax=Th...	[more]
A0A7S3XQH8_HETAK	2.240e-25	48.80	Hypothetical protein n=3 Tax=Heterosigma akashiwo ...	[more]
A0A383VN41_TETOB	2.860e-22	43.33	Peptidase S59 domain-containing protein n=2 Tax=Te...	[more]
A0A2P6TXK9_CHLSO	6.800e-22	44.44	Nuclear pore complex NUP98A isoform X1 isoform C n...	[more]
A0A6J1W9W0_9SAUR	9.680e-22	40.40	nuclear pore complex protein Nup98-Nup96-like n=1 ...	[more]
A0A1D1ZWB9_AUXPR	9.820e-22	44.74	Peptidase S59 domain-containing protein (Fragment)...	[more]
A0A670IDK0_PODMU	1.140e-21	41.72	Nuclear pore complex protein Nup98-Nup96 n=19 Tax=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-ischiensis_contig1	contig	S-ischiensis_contig1:7955358..7958358 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Schizocladia ischiensis KU_0333	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	146.7
Seed ortholog evalue	2.8e-32
Seed eggNOG ortholog	2880.D7FX93
Preferred name	NUP145
KEGG ko	ko:K14297,ko:K18716,ko:K18720
KEGG TC	1.I.1
KEGG Pathway	ko03013,ko05164,map03013,map05164
KEGG Module	M00427
GOs	GO:0000972,GO:0000973,GO:0003674,GO:0003676,GO:0003723,GO:0005048,GO:0005198,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006325,GO:0006342,GO:0006344,GO:0006348,GO:0006355,GO:0006403,GO:0006405,GO:0006406,GO:0006409,GO:0006606,GO:0006607,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0008104,GO:0008139,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016458,GO:0016973,GO:0017038,GO:0017056,GO:0019219,GO:0019222,GO:0031080,GO:0031081,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031503,GO:0031967,GO:0031975,GO:0032386,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034397,GO:0034398,GO:0034504,GO:0034613,GO:0034629,GO:0034641,GO:0035392,GO:0036228,GO:0040029,GO:0042277,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044464,GO:0044613,GO:0044614,GO:0045184,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046822,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051031,GO:0051049,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051640,GO:0051641,GO:0051649,GO:0051664,GO:0051668,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0080090,GO:0090304,GO:0090435,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.	structural constituent of nuclear pore
EggNOG OGs	KOG0845@1,KOG0845@2759
Ec32 ortholog description	Peptidase S59, nucleoporin
Ec32 ortholog	Ec-26_004030.1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03019,ko03036
Hectar predicted targeting category	other localisation
Exons	4
Model size	1479
Cds size	1476
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-ischiensis_contig1.1176.1	prot_S-ischiensis_contig1.1176.1	Schizocladia ischiensis KU_0333	polypeptide	S-ischiensis_contig1 7955359..7958358 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815488.4094791-CDS-S-ischiensis_contig1:7955358..7955856	1622815488.4094791-CDS-S-ischiensis_contig1:7955358..7955856	Schizocladia ischiensis KU_0333	CDS	S-ischiensis_contig1 7955359..7955856 -
1695739730.4197178-CDS-S-ischiensis_contig1:7955358..7955856	1695739730.4197178-CDS-S-ischiensis_contig1:7955358..7955856	Schizocladia ischiensis KU_0333	CDS	S-ischiensis_contig1 7955359..7955856 -
1622815488.4267936-CDS-S-ischiensis_contig1:7956167..7956548	1622815488.4267936-CDS-S-ischiensis_contig1:7956167..7956548	Schizocladia ischiensis KU_0333	CDS	S-ischiensis_contig1 7956168..7956548 -
1695739730.4407864-CDS-S-ischiensis_contig1:7956167..7956548	1695739730.4407864-CDS-S-ischiensis_contig1:7956167..7956548	Schizocladia ischiensis KU_0333	CDS	S-ischiensis_contig1 7956168..7956548 -
1622815488.4370253-CDS-S-ischiensis_contig1:7956947..7957112	1622815488.4370253-CDS-S-ischiensis_contig1:7956947..7957112	Schizocladia ischiensis KU_0333	CDS	S-ischiensis_contig1 7956948..7957112 -
1695739730.4515095-CDS-S-ischiensis_contig1:7956947..7957112	1695739730.4515095-CDS-S-ischiensis_contig1:7956947..7957112	Schizocladia ischiensis KU_0333	CDS	S-ischiensis_contig1 7956948..7957112 -
1622815488.4475772-CDS-S-ischiensis_contig1:7957926..7958358	1622815488.4475772-CDS-S-ischiensis_contig1:7957926..7958358	Schizocladia ischiensis KU_0333	CDS	S-ischiensis_contig1 7957927..7958358 -
1695739730.4599893-CDS-S-ischiensis_contig1:7957926..7958358	1695739730.4599893-CDS-S-ischiensis_contig1:7957926..7958358	Schizocladia ischiensis KU_0333	CDS	S-ischiensis_contig1 7957927..7958358 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-ischiensis_contig1:7955358..7958358-
coding sequence from alignment at S-ischiensis_contig1:7955358..7958358-

protein sequence of mRNA_S-ischiensis_contig1.1176.1

>prot_S-ischiensis_contig1.1176.1 ID=prot_S-ischiensis_contig1.1176.1|Name=mRNA_S-ischiensis_contig1.1176.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=492bp
ARRSNLGESGANFAPRGGGVEERKDSEPGGGGGGGKSSDAGPQHGSGEAT
GPLGGNGRPSPSGKHGDSSNGGDDGWNGGDAGSRSERLVGPLPGYETVPP
MEELSRMSAAQLSAVAGFAVRRPGIGSVEWLMPVDLRGVDLARTVSIQKK
SVAVYDDLEEPSDKPPVGKGLNRPARVTLEGVLPSRRAPPEKARNYAAQV
AAKTKESGAELESYDQETGRWVFRTLHFSKYGMDDDEEEEEEGEGAVPMQ
DPRQSPTDGRRRKATGACGSSVVAAAAAAAGDDDGRSGGGSFPTKFSAPS
LDDDEVEGEGMDMGEEGEGEGAGGEELAATPTNLQDSTQESLPTGALSGP
LPDSTFVFRSLTEEGTGGGGSRGWGGSTPQTAETLAESVGLDSARVSHLR
RSLFGDPTPPRGLGGGADGMEEEEWGLEKGRAAAEASSSPSAFDAAVFED
RGQRSRRTRGKAKPAPAAVPSPLPSPSLMVAMAPPLTFPAAA

mRNA from alignment at S-ischiensis_contig1:7955358..7958358-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-ischiensis_contig1.1176.1 ID=mRNA_S-ischiensis_contig1.1176.1|Name=mRNA_S-ischiensis_contig1.1176.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3001bp|location=Sequence derived from alignment at S-ischiensis_contig1:7955358..7958358- (Schizocladia ischiensis KU_0333)
GCACGCAGGAGCAACCTTGGCGAATCTGGAGCGAATTTTGCGCCGCGGGG
GGGCGGGGTGGAAGAGAGGAAGGACTCTGAACCTGGCGGCGGCGGCGGTG
GCGGCAAGTCGTCTGACGCAGGCCCGCAGCATGGGTCAGGGGAGGCCACT
GGCCCGCTGGGGGGCAATGGGCGGCCGTCTCCCAGCGGGAAACATGGTGA
CTCCTCCAATGGTGGGGATGATGGTTGGAATGGAGGTGATGCGGGCTCGA
GGTCGGAGAGGCTGGTGGGGCCATTGCCTGGGTATGAGACGGTGCCGCCT
ATGGAGGAGCTGAGCCGCATGAGCGCTGCGCAGCTGTCGGCTGTGGCAGG
GTTTGCGGTGCGGCGGCCAGGCATTGGCAGCGTGGAGTGGCTAATGCCCG
TGGATCTGCGCGGCGTGGACTTGGCCCGGACGGTGAGATGAGAGAGGGTA
CTCAGTACCGCAAATCCAGGCACTAGCGGCAAGTAGCGAGTTACGTCATG
TGATGGGGGCAGAGAGGGAGACGGAGGGAGAGAGGGGTAGTCGTTCTCCC
TTAGTCGACTGTACTGCAGTACTGTACAGTAGTATATATAGTAGCCTCTG
GTGGTGGGGTAGCCACCCCTTCTCACTGTGGCTCTGCCAGGGGAGGGAGG
GGGCCTGCTCCGTCTCGATCGAGGCGCGTGGTCAATGGTCTCGGGACTAC
GGCAAGCTCAGCATGAGTACTTACATGCATATATACTACGTATCCGCCCG
AGGCGCGGGGTCAATGGTCTCGGGACTACGGCAAGCACCACGTGAGTACA
TATATCCGGCTCTAGTGGGGGGGGTGGCCACCCCCTCCCAGCCTGGCTGT
GCCAGGGAGGGAGGGGTCCTGCTCCGTCTCGACTGAGGCGCGGGGGCAAT
GGTCTCGGGACTACGGCAAGCACCACGTGAGTACATGTATATTCAGGAAT
GTACTGCAGTAGGTACAGCAGTACGAGTACCCGTACATGGTACACGCTGC
GCTTGCTCTAGCCCTGAGACCGTTGACAGTTGCATGACAGCTTTGACTCT
TCCGACTACGCCGCTGTACACGAGCAGTATGTACTGCAGTACTCGAGTAC
GCTCACTTCACTTCCACCCCTGTCCCCTCCCTTGCTCCCCGCCTGCCCGC
CCCGCCCCCGTCTCGTGTGTGCCGTCGTGTCTCGTGCACTCCCCCCCGAT
CCCACCCGCTCCGGTCCGGCCCCGGGGGCAATTCGTGTACCTGCAGGTGA
GTATCCAGAAGAAGTCAGTAGCGGTGTATGACGACCTGGAGGAACCCTCT
GACAAGCCGCCCGTGGGCAAGGGCCTGAACCGCCCTGCCAGGGTCACCCT
GGAAGGCGTTCTTCCCTCCAGGAGGGCCCCCCCGGAGAAGGCCCGCAACT
ACGCAGCACAGGTGCGAGGGACACCCTCTTCTTCTTCCTCGTATTCTTCG
TATTCTTCTTCTTCGTGTTCTTCTTCTTGTGTACGTGGTCTGTGTGTGTA
CAAGTCTATCCCTTGCTTTGGCCTGCCTGCTGCTGCGTGCGTCATCCTCC
TCCCCCCCCTCCTCCTCCTCCTCCACCACCACCACCACCACCACCTCGTC
CTCTCCTCCCCACCCGTCTTGTTGTCGCGTTGTGCCCTCTCAGCCCTCTT
CTCTCCTCCCCCTTCCTCCACCACTCTCTTCTCCCTCGACTCCCGCAGCC
ACCCCGCCCCTCCCCCGCCGGCCCGTTCTCCCCCCCCCTTTCCCGCCGGG
ACACATGCTCACGCTCTCTCAATCTCAATGGCATGACACATGGCACCCCC
CTGCCCGCAGGTGGCGGCCAAGACCAAGGAGAGCGGCGCCGAGCTCGAGT
CGTACGACCAGGAAACGGGCAGGTGGGTGTTCCGCACCCTGCACTTCTCC
AAGTATGGGATGGACGACGACGAGGAGGAGGAGGAGGAGGGGGAGGGGGC
GGTCCCCATGCAGGACCCCCGTCAGAGCCCGACGGACGGGCGCCGGCGCA
AGGCCACGGGTGCCTGTGGGTCATCCGTCGTCGCCGCCGCCGCCGCCGCA
GCAGGTGACGACGACGGCCGCTCGGGTGGCGGGAGCTTCCCGACCAAGTT
TTCGGCTCCCTCGCTGGACGACGACGAGGTGGAGGGAGAGGGGATGGACA
TGGGCGAGGAGGGAGAAGGAGAGGGGGCGGGAGGTGAAGAGGTGAGGGCC
GGTAGCTCACTTGATCTGTGTGCCGTGCAACACCCTTTTTTCAAGTTTTT
GACCCCGTGGCAAGCATAGGTACTGCCGCCGGGGTGGGTGTTGGAGATTG
AGGGTAGAGTATCCACTGACACACGTACAGACTGCATTTACCATACTGTA
TACTGCAGTTAGGCACACAGTGCGTACCTACTGTACGTCTGCTCGATGCA
CTCAAGTGTTCTGTCAAGTTACTACAGTAGCATCTCAGACAGTGCCATTT
ATCTCCGTCTCCCTCTCGTTGCCGCCCTACCTTTCCCGGCGGGGACCAGC
AGCTGGCCGCCACGCCCACCAACCTCCAGGACAGCACCCAGGAATCGCTC
CCCACAGGCGCCCTCTCCGGGCCTCTGCCGGACAGCACCTTTGTGTTCCG
CTCCCTGACCGAGGAAGGCACCGGCGGCGGCGGCAGCAGGGGGTGGGGGG
GATCCACGCCACAGACGGCGGAAACCCTGGCCGAGTCCGTGGGGCTGGAC
AGTGCACGCGTGTCCCACCTCCGCCGCTCCCTCTTTGGGGACCCCACGCC
CCCTCGGGGCCTGGGCGGGGGGGCGGACGGCATGGAGGAGGAAGAGTGGG
GGTTGGAGAAGGGGAGGGCGGCGGCAGAGGCCTCCTCCTCTCCCTCGGCC
TTTGACGCCGCCGTCTTTGAGGACCGAGGCCAGAGGAGCAGGAGGACCCG
CGGCAAGGCCAAGCCGGCGCCGGCGGCTGTCCCGTCGCCGTTGCCATCGC
CCTCACTCATGGTAGCCATGGCGCCGCCCCTTACTTTCCCGGCGGCCGCG
G

Coding sequence (CDS) from alignment at S-ischiensis_contig1:7955358..7958358-

>mRNA_S-ischiensis_contig1.1176.1 ID=mRNA_S-ischiensis_contig1.1176.1|Name=mRNA_S-ischiensis_contig1.1176.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2952bp|location=Sequence derived from alignment at S-ischiensis_contig1:7955358..7958358- (Schizocladia ischiensis KU_0333)
GCACGCAGGAGCAACCTTGGCGAATCTGGAGCGAATTTTGCGCCGCGGGG
GGGCGGGGTGGAAGAGAGGAAGGACTCTGAACCTGGCGGCGGCGGCGGTG
GCGGCAAGTCGTCTGACGCAGGCCCGCAGCATGGGTCAGGGGAGGCCACT
GGCCCGCTGGGGGGCAATGGGCGGCCGTCTCCCAGCGGGAAACATGGTGA
CTCCTCCAATGGTGGGGATGATGGTTGGAATGGAGGTGATGCGGGCTCGA
GGTCGGAGAGGCTGGTGGGGCCATTGCCTGGGTATGAGACGGTGCCGCCT
ATGGAGGAGCTGAGCCGCATGAGCGCTGCGCAGCTGTCGGCTGTGGCAGG
GTTTGCGGTGCGGCGGCCAGGCATTGGCAGCGTGGAGTGGCTAATGCCCG
TGGATCTGCGCGGCGTGGACTTGGCCCGGACGGCACGCAGGAGCAACCTT
GGCGAATCTGGAGCGAATTTTGCGCCGCGGGGGGGCGGGGTGGAAGAGAG
GAAGGACTCTGAACCTGGCGGCGGCGGCGGTGGCGGCAAGTCGTCTGACG
CAGGCCCGCAGCATGGGTCAGGGGAGGCCACTGGCCCGCTGGGGGGCAAT
GGGCGGCCGTCTCCCAGCGGGAAACATGGTGACTCCTCCAATGGTGGGGA
TGATGGTTGGAATGGAGGTGATGCGGGCTCGAGGTCGGAGAGGCTGGTGG
GGCCATTGCCTGGGTATGAGACGGTGCCGCCTATGGAGGAGCTGAGCCGC
ATGAGCGCTGCGCAGCTGTCGGCTGTGGCAGGGTTTGCGGTGCGGCGGCC
AGGCATTGGCAGCGTGGAGTGGCTAATGCCCGTGGATCTGCGCGGCGTGG
ACTTGGCCCGGACGGTGAGTATCCAGAAGAAGTCAGTAGCGGTGTATGAC
GACCTGGAGGAACCCTCTGACAAGCCGCCCGTGGGCAAGGGCCTGAACCG
CCCTGCCAGGGTCACCCTGGAAGGCGTTCTTCCCTCCAGGAGGGCCCCCC
CGGAGAAGGCCCGCAACTACGCAGCACAGGTGAGTATCCAGAAGAAGTCA
GTAGCGGTGTATGACGACCTGGAGGAACCCTCTGACAAGCCGCCCGTGGG
CAAGGGCCTGAACCGCCCTGCCAGGGTCACCCTGGAAGGCGTTCTTCCCT
CCAGGAGGGCCCCCCCGGAGAAGGCCCGCAACTACGCAGCACAGGTGGCG
GCCAAGACCAAGGAGAGCGGCGCCGAGCTCGAGTCGTACGACCAGGAAAC
GGGCAGGTGGGTGTTCCGCACCCTGCACTTCTCCAAGTATGGGATGGACG
ACGACGAGGAGGAGGAGGAGGAGGGGGAGGGGGCGGTCCCCATGCAGGAC
CCCCGTCAGAGCCCGACGGACGGGCGCCGGCGCAAGGCCACGGGTGCCTG
TGGGTCATCCGTCGTCGCCGCCGCCGCCGCCGCAGCAGGTGACGACGACG
GCCGCTCGGGTGGCGGGAGCTTCCCGACCAAGTTTTCGGCTCCCTCGCTG
GACGACGACGAGGTGGAGGGAGAGGGGATGGACATGGGCGAGGAGGGAGA
AGGAGAGGGGGCGGGAGGTGAAGAGGTGGCGGCCAAGACCAAGGAGAGCG
GCGCCGAGCTCGAGTCGTACGACCAGGAAACGGGCAGGTGGGTGTTCCGC
ACCCTGCACTTCTCCAAGTATGGGATGGACGACGACGAGGAGGAGGAGGA
GGAGGGGGAGGGGGCGGTCCCCATGCAGGACCCCCGTCAGAGCCCGACGG
ACGGGCGCCGGCGCAAGGCCACGGGTGCCTGTGGGTCATCCGTCGTCGCC
GCCGCCGCCGCCGCAGCAGGTGACGACGACGGCCGCTCGGGTGGCGGGAG
CTTCCCGACCAAGTTTTCGGCTCCCTCGCTGGACGACGACGAGGTGGAGG
GAGAGGGGATGGACATGGGCGAGGAGGGAGAAGGAGAGGGGGCGGGAGGT
GAAGAGCTGGCCGCCACGCCCACCAACCTCCAGGACAGCACCCAGGAATC
GCTCCCCACAGGCGCCCTCTCCGGGCCTCTGCCGGACAGCACCTTTGTGT
TCCGCTCCCTGACCGAGGAAGGCACCGGCGGCGGCGGCAGCAGGGGGTGG
GGGGGATCCACGCCACAGACGGCGGAAACCCTGGCCGAGTCCGTGGGGCT
GGACAGTGCACGCGTGTCCCACCTCCGCCGCTCCCTCTTTGGGGACCCCA
CGCCCCCTCGGGGCCTGGGCGGGGGGGCGGACGGCATGGAGGAGGAAGAG
TGGGGGTTGGAGAAGGGGAGGGCGGCGGCAGAGGCCTCCTCCTCTCCCTC
GGCCTTTGACGCCGCCGTCTTTGAGGACCGAGGCCAGAGGAGCAGGAGGA
CCCGCGGCAAGGCCAAGCCGGCGCCGGCGGCTGTCCCGTCGCCGTTGCCA
TCGCCCTCACTCATGGTAGCCATGGCGCCGCCCCTTACTTTCCCGGCGGC
CGCGCTGGCCGCCACGCCCACCAACCTCCAGGACAGCACCCAGGAATCGC
TCCCCACAGGCGCCCTCTCCGGGCCTCTGCCGGACAGCACCTTTGTGTTC
CGCTCCCTGACCGAGGAAGGCACCGGCGGCGGCGGCAGCAGGGGGTGGGG
GGGATCCACGCCACAGACGGCGGAAACCCTGGCCGAGTCCGTGGGGCTGG
ACAGTGCACGCGTGTCCCACCTCCGCCGCTCCCTCTTTGGGGACCCCACG
CCCCCTCGGGGCCTGGGCGGGGGGGCGGACGGCATGGAGGAGGAAGAGTG
GGGGTTGGAGAAGGGGAGGGCGGCGGCAGAGGCCTCCTCCTCTCCCTCGG
CCTTTGACGCCGCCGTCTTTGAGGACCGAGGCCAGAGGAGCAGGAGGACC
CGCGGCAAGGCCAAGCCGGCGCCGGCGGCTGTCCCGTCGCCGTTGCCATC
GCCCTCACTCATGGTAGCCATGGCGCCGCCCCTTACTTTCCCGGCGGCCG
CG