mRNA_S-ischiensis_contig1.1037.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig1.1037.1 vs. uniprot
Match: D7FQQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ0_ECTSI) HSP 1 Score: 264 bits (674), Expect = 5.600e-81 Identity = 141/339 (41.59%), Postives = 203/339 (59.88%), Query Frame = 1
Query: 34 KRSGLEYFEQRYQARGG-YLLNPYTGELIDGPDKAAAEKPGVRSRSHWVRPSKDVPIVSNGKVDDCMPLPHQLRDLLDDFGGNRYRARWCAAEVIQRNVRAGLGRWRLGRALARAYAKDFEQKSGRFTFTHATAGVPSYNKPVGMGTADLWSSAADPVDEQLLNMLLGVQETTHDEGEELDLRDWESAQRQRHRNYQYFEAQQFRKGPLCRRCGPGAKVETSISNIFLYPRKFYPGRRPLVHPADPSYVNVRLGEAVSVMDGLNERE-------------------------VRADAYFLVRNASERGILAVVEVMNRYKKDMNVQAAGLHRIAGSLIK 972
+R+ +YF++ Q G +L N YTGE I D+ + PG R+ SHW P+ VP + G+ D H LRDL DDF G+ YRARW AE+IQRNVRA L RWR+ RAL + KD++ ++ RF+FTH Y+KP GMGT DLW+ + VDE L+++ L V+ T +E + + RDWE+++R R R Y++++ ++F +GP CR GPG+ E+S +N+FLYP+K+Y +P HP D R+G V+ MDGL E+ + ADAYF VRNASE G L V+++M +++ D+ VQ GL R+AGSL++
Sbjct: 7 QRATQDYFDRFPQENGSIFLFNTYTGEAIYDVDRWGSPLPGARTLSHWFVPTAVVPPATEGEPVDT----HNLRDLRDDFPGSEYRARWHCAELIQRNVRAALSRWRVARALCAVWVKDYDHEAERFSFTHQNNREMQYHKPWGMGTVDLWAVPGEKVDEHLVSLFLRVESATAEERTDEEPRDWEASKRHRRRLYKFYQEKKFSEGPHCRIVGPGSLKESSFTNVFLYPKKYYK-TKPFSHPRDRQCEGARMGSQVTCMDGLVEKRTTSTENRNRKDASHGQAPYGEKGQLISADAYFHVRNASEHGALNVIKLMFKHRDDLRVQGVGLQRMAGSLLE 340
BLAST of mRNA_S-ischiensis_contig1.1037.1 vs. uniprot
Match: A0A836C9E0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9E0_9STRA) HSP 1 Score: 159 bits (403), Expect = 2.330e-39 Identity = 126/395 (31.90%), Postives = 185/395 (46.84%), Query Frame = 1
Query: 442 SYNKPVGMGTADLWSS------------------------AADP-----------VDEQLLNMLL----------------GVQETTHDEGEELDLRD----WESAQRQRHRNYQYFEAQQFRKGPLCRRCGPGAKVETSISNIFLYPRKFYPGRRPLVHPADPSYVNVRLGEAVSVMDGLNEREVRADAYFLVRNASERGILAVVEVMNRYKKDMNVQAAGLHRIAGSLIKEDTAGAASAGTAQAMAKALELLRSHPAEEVVQAEACAALASLTSEMSGREELGEKHP----DWREDVVGALMRMRTVRRERVGELDPLGNTTRRQDVELPSPMAHNIALHGCRVLANMACDEKRRDQVARDAVTAVVHCVEFVKDDPVLLQAASIAIYNFVNR 1449
SY KP GMG ADLW + A +P +++ LL+ L G + G E+ + D WE +RQRH YQ+ E FR GP RR GPG ETS++N FL P+K Y P PA ++ LG +V+ +DG+ E +VRADAYFL R A E G AV+ V+ RY+ D V A L +A S +ED G A+ + KA+E L+ P + VQ EA AL SLT + R L + + W + +V + + V D +G R +++++ + + +I + R+ NMACD+ RD +A+ A A+ ++ ++DD + A A+YNFV R
Sbjct: 32 SYQKPYGMGCADLWCNPPSTAALSNXXXXXXXXXXXXXXXALNPPPPSPAKCRSRLEQHLLSATLRKTGAKQAIVAVGEGSGSGSAAREGGVEVGVEDRAGAWEQDRRQRHAPYQFTEGG-FRDGPYARRAGPGRFRETSLTNPFLRPKKHYTAP-PFTRPA-AAFARADLGASVTALDGVAETQVRADAYFLTRAAFEGGAGAVLGVLERYRNDPEVVALALRHVAKSDPREDEYGRATEWGRACVRKAVEALQGWPRQPWVQVEALCALQSLTDRLCYRTVLRDDNKLRPVPWEDMIVAVMSDAIVMEPSFVVHKDIMGRDIR-EEIQVATGPSRDIVAYASRLFGNMACDDDHRDHIAQVAAPAIKAALDLIQDDGAVAYYACAALYNFVFR 422 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.1037.1 >prot_S-ischiensis_contig1.1037.1 ID=prot_S-ischiensis_contig1.1037.1|Name=mRNA_S-ischiensis_contig1.1037.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=483bp MAQAMAHRDAWKRSGLEYFEQRYQARGGYLLNPYTGELIDGPDKAAAEKPback to top mRNA from alignment at S-ischiensis_contig1:7163108..7168419+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig1.1037.1 ID=mRNA_S-ischiensis_contig1.1037.1|Name=mRNA_S-ischiensis_contig1.1037.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5312bp|location=Sequence derived from alignment at S-ischiensis_contig1:7163108..7168419+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig1:7163108..7168419+ >mRNA_S-ischiensis_contig1.1037.1 ID=mRNA_S-ischiensis_contig1.1037.1|Name=mRNA_S-ischiensis_contig1.1037.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2898bp|location=Sequence derived from alignment at S-ischiensis_contig1:7163108..7168419+ (Schizocladia ischiensis KU_0333)back to top |