mRNA_S-ischiensis_contig1.208.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig1.208.1 vs. uniprot
Match: D8LT95_ECTSI (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT95_ECTSI) HSP 1 Score: 366 bits (940), Expect = 2.470e-113 Identity = 260/519 (50.10%), Postives = 317/519 (61.08%), Query Frame = 2
Query: 944 LAVVCQYCQRYLDFCAERVGVAEDTSSEFFARVRVLEGVYVQLEDLYCLKSVEEAIRISEPIEVQEGVFVSSMVEDAGFLVHKSLERSVSTRSEQAIMAVCNRVTELLDPQAPDPSFYAGLCEGTAAEATAXXXXXXXXXXGGXXXXXXXXXXXXXRGSGDLSMALARALDEAIDEAEGGGGGSNGLCTIPEDLRGELVWVNSTHVGLFSVSAIQARGGADALERYLEASNPLVELMLEQVTRILRDYRNLRDERVGAVLAMVYDPVSRALRSGFGAASYALGPEAYEALSEDLHNVSGVLSVIKGECYASVGATSGRRRRRRSGGPLSTV-------CRPSLLREPFELLVRRVSEQLCGELTEGIMAKGGATAAGSTMQRAGGXXXXXXXXXXXXXXXSGFTEWGALLLQREVRTLQKGLSGLLDTETLGEQFAPAVRLIQLLNVEKPADALQYRLGPS------SGGGGVGAGTGPRXXXXXXXPVGPDPPSAEEVRRVLRLRVDFPREAIDALQL 2461
+A+ CQYC RYLDF A+ +G+ ED SSEF+A+VR++EG YVQLED YCL+SVEEA+RI+EPIEVQ+G +VSSMVEDA FLVHKSL RSVSTRSEQAIMAVCNRVTE+LDP AP+PSF+ GL T A+ XXX XXXXXXXXXXXXX + G +V +NS HV L SVSAIQ DAL R+LEASNPLV LML++V RILR Y++LRD R+ VL + PVS AL + FG++SYALGP YE S DL VL +A+ A +G SGG CR +LL+EPFE LVRR++ ++ + AKG XXXXXXXXXXX FTEWGALLL++EVRTLQ+GL+ L++T++L +F L++LLN E+PADAL YR P+ G GV G G R V S+E V+ VLRLR DF REAIDAL+L
Sbjct: 1 MALACQYCHRYLDFVADDLGLPEDQSSEFYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFFGGLA--TEADHRVPVGGGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGAMVGINSVHVALSSVSAIQ-----DALNRFLEASNPLVGLMLDEVARILRSYKDLRDSRLNDVLEALSPPVSSALANAFGSSSYALGPAQYELRSGDLPGARRVL-------HAATRAMTGSDNSGESGGXXXXXXXXADGGCRAALLQEPFEELVRRLASRVAAGVEMAARAKG----------------HGXXXXXXXXXXXXXFTEWGALLLRKEVRTLQQGLAALMETDSLNMEFGDLNELVRLLNFERPADALDYRPPPAPRRPRDDGSAGVNGGGGGRIGDGENASV-----SSERVKEVLRLRADFQREAIDALEL 484
BLAST of mRNA_S-ischiensis_contig1.208.1 vs. uniprot
Match: A0A6H5JUH3_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH3_9PHAE) HSP 1 Score: 377 bits (968), Expect = 5.460e-113 Identity = 262/538 (48.70%), Postives = 316/538 (58.74%), Query Frame = 2
Query: 908 FDPRGMDFVIDELAVVCQYCQRYLDFCAERVGVAEDTSSEFFARVRVLEGVYVQLEDLYCLKSVEEAIRISEPIEVQEGVFVSSMVEDAGFLVHKSLERSVSTRSEQAIMAVCNRVTELLDPQAPDPSFYAGLCEGTAAEATAXXXXXXXXXXGGXXXXXXXXXXXXXRGSGDLSMALAR------ALDEAIDEAEG------GGGGSNGLCTIPE--DLRGELVWVNSTHVGLFSVSAIQARGGADALERYLEASNPLVELMLEQVTRILRDYRNLRDERVGAVLAMVYDPVSRALRSGFGAASYALGPEAYEALSEDLHNVSGVLSVIKGECYASVGATSGRRRRRRSGGPLSTVCRPSLLREPFELLVRRVSEQLCGELTEGIMAKGGATAAGSTMQRAGGXXXXXXXXXXXXXXXSGFTEWGALLLQREVRTLQKGLSGLLDTETLGEQFAPAVRLIQLLNVEKPADALQYRLGPS------SGGGGVGAGTGPRXXXXXXXPVGPDPPSAEEVRRVLRLRVDFPREAIDALQL 2461
FD RGMDFVIDE+A+ CQYC RYLDF A+ +G+ ED SSEF+A+VR+ EG YVQLED YCL+SVEEA+RI+EPIEVQ+G +VSSMVEDA FLVHKSL RSVSTRSEQAIMAVCNRVTE+LDP AP+PSFY GL A EA GG + D S ALA+ AL+EA DE G G GG+ G+ ++ G +V +NS HV L SVSAIQ DAL R+LEASNPLV LML++V RILR Y+ LRD R+ VL + PVS A+ + FG++SYALGP YE S DL G V+ A G+ S SG XXXXXXXXXXXXXXX GFTEWGALLL++EVRTLQ+GL+ L++T++L +F L++LLN E+PADAL YR P+ +G GV G G R V S+E V+ VLRLR +F REAIDAL+L
Sbjct: 357 FDARGMDFVIDEMALACQYCHRYLDFVADDLGLPEDQSSEFYAQVRLTEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFYGGL----ATEAD------HRVPVGGGEGGRGDGEKGSDQQPNDFSTALAKWDCGGWALEEAADEHSGPRGEGSGNGGAAGIWAGEGFGEVEGAMVGINSVHVALSSVSAIQ-----DALNRFLEASNPLVGLMLDEVARILRSYKELRDSRLNDVLEALSPPVSSAIANAFGSSSYALGPAQYELRSGDL---PGARRVLHAATRAMTGSDS-------SGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXGFTEWGALLLRKEVRTLQQGLAALMETDSLSTEFGDLNELVRLLNFERPADALDYRPPPAPRRPGDNGSAGVNGGGGGRIGDGGNASV-----SSERVKEVLRLRAEFQREAIDALEL 855
BLAST of mRNA_S-ischiensis_contig1.208.1 vs. uniprot
Match: A0A7S3XW30_HETAK (Conserved oligomeric Golgi complex subunit 4 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW30_HETAK) HSP 1 Score: 161 bits (408), Expect = 2.660e-39 Identity = 116/336 (34.52%), Postives = 165/336 (49.11%), Query Frame = 2
Query: 911 DPRGMDFVIDELAVVCQYCQRYLDFCAERVGVAEDTSSEFFARVRVLEGVYVQLEDLYCLKSVEEAIRISEPIEVQEGVFVSSMVEDAGFLVHKSLERSVSTRSEQAIMAVCNRVTELLDPQAPD------PSFYAGL-CEGTAAEATAXXXXXXXXXXGGXXXXXXXXXXXXXRGSGDLSMALARALDEAIDEAEGGGGGSNGLCTIPEDLRGELV--WVNSTHVGLFSVSAIQARGGADALERYLEASNPLVELMLEQVTRILRDYRNLRDERVGAVLAMVYDPVSRALRSGFGAASYALGPEAYEALSEDLHNVSGVLSVIKGECYASVGATS 1891
DP +D V DEL+ +CQ RYL F +G D E + +++ L G ++ +EDLYC +V AI +SEPIEVQ GV+ S++VEDA FLV KSLER++ST S+QA MAV NR+ ELLDPQ PSFYA L G G DL+ AL A AI+E E + LR + + +NS HV + S++A++ D + YL+A +PLV+ ML+ RI+ Y+ L D VG + A D ++ A+ + G Y + E YE S + + + G + A +
Sbjct: 97 DPAQLDVVADELSYLCQLVTRYLSFVCMTIG--HDEQGELYGKLQQLIGTFISVEDLYCQLNVRRAIELSEPIEVQPGVYCSTLVEDAFFLVKKSLERTLSTCSDQATMAVSNRLAELLDPQQAAAGGEGAPSFYAALRAMGDVRPQEVLAEKRAAAAAQGEGGAGKVPGAEAPPAPPDLAQALLAA---AIEEEES------------KALRVDSIAFQINSAHVAISSITAMR-----DMMSEYLDAESPLVQTMLDDFRRIMEPYQALVDGLVGRLAAAAGDALAAAVAAALGG-RYDIEMEEYERRSSSGEGEKRLAAAVTGNAVLAAAAAA 409
BLAST of mRNA_S-ischiensis_contig1.208.1 vs. uniprot
Match: W7TI94_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TI94_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.090e-18 Identity = 58/137 (42.34%), Postives = 82/137 (59.85%), Query Frame = 2
Query: 896 GTSKFDPRGMDFVIDELAVVCQYCQRYLDFCAERVGVAEDTSSEFFARVRVLEGVYVQLEDLYCLKSVEEAIRISEPIEVQEGVFVSSMVEDAGFLVHKSLERSVSTRSEQAIMAVCNRVTELLDPQAPDPSFYAGL 1306
GT + +DF +DEL +V RYL F V + + F +V+ L G YV +E YC +V +AI +P EVQEGV VS++VED ++++S+ER+ T S+QAI+AV +R TELL P + PSF A L
Sbjct: 321 GTEDLVVQELDFALDELQLVLGLSNRYLAF----VAAPREECMDLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDSV-PSFAAAL 452
BLAST of mRNA_S-ischiensis_contig1.208.1 vs. uniprot
Match: W7TYV3_9STRA (Conserved oligomeric Golgi complex subunit 4 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYV3_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.600e-18 Identity = 58/137 (42.34%), Postives = 82/137 (59.85%), Query Frame = 2
Query: 896 GTSKFDPRGMDFVIDELAVVCQYCQRYLDFCAERVGVAEDTSSEFFARVRVLEGVYVQLEDLYCLKSVEEAIRISEPIEVQEGVFVSSMVEDAGFLVHKSLERSVSTRSEQAIMAVCNRVTELLDPQAPDPSFYAGL 1306
GT + +DF +DEL +V RYL F V + + F +V+ L G YV +E YC +V +AI +P EVQEGV VS++VED ++++S+ER+ T S+QAI+AV +R TELL P + PSF A L
Sbjct: 321 GTEDLVVQELDFALDELQLVLGLSNRYLAF----VAAPREECMDLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDSV-PSFAAAL 452
BLAST of mRNA_S-ischiensis_contig1.208.1 vs. uniprot
Match: A0A836CHF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF9_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.100e-15 Identity = 140/567 (24.69%), Postives = 192/567 (33.86%), Query Frame = 2
Query: 911 DPRGMDFVIDELAVVCQYCQRYLDFCAERVGVAEDTSSEFFARVRVLEGVYVQLEDLYCLKSVEEAIRISEPIEVQEGVFVSSMVEDAGFLVHKSLERSVSTRSEQAIMAVCNRVTELLDPQAPDPSFYAGLCEGTAAEATAXXXXXXXXXXGGXXXXXXXXXXXXXRGSGDLSMALARALDEAIDEAEGGG-----------------------------GGSNGLCTIPEDLRGELVWVNSTHVGLFSVSAIQARGGADALERYLEASNPLVELMLEQVTRIL----------------------RDYRNLRDERVGAVLA-MVYDPVSRALRSGFGA-ASYALGPEAYEALSEDLHNVSGVLSVIKGECYASVGATSGRRRRRRSGGPLSTVCRPSLLREPFELLVRRVSEQLCGELTEGIMAKGGATAAGSTMQRAGGXXXXXXXXXXXXXXXSGFTEWGALLLQREVRTLQKGLSGLLDTETLGEQFAPAVRLIQLLNVEKPADA-LQYRLGPSSGGGGVGAGTGPRXXXXXXXPVGPDPPSAEEVRRVLRLRVDFPREAID 2449
DP+ MDF+IDELA CQ QRYLDF A+ EGV C + R S P +S + E + +RV L+ Y L + A G R S D S ALARAL+EA++ +E G R +V NS H S +A++A A+ L PLV ++EQV R Y LRDE + +L Y P++ LR G A A Y + + YEA +V G A+ AT+ GPL CR L F LL + + +LC ++ ++ TEWGALLLQREVR LQ+ L L++ TL QF+ +++QLL +E+PADA L +++G + + R VLRLR DF AI+
Sbjct: 264 DPKTMDFLIDELAFACQLGQRYLDFAAQ-------------------EGVSC------CEGGPNPSARASPPRAA------------------RSPRKGGDEEGEGGEGGLLSRVQALVGAYVQLEDAYCLL-----SVHKALRIAEPIEVTAGVFVSSARPPSSHDRAS-DFSAALARALEEAVEVSEADAALPXXXXXXXXXXXXXEYDRLVAGVLRPRGXXXXXXXXXXRARDLVVMANSAHFAAHSAAAVRA-----AIAGRLREGAPLVVALMEQVAAAQVCXXXXXXXXXXXXXXXXXXXQRAYEQLRDEHLACLLREAAYPPLAEVLRRGACARACYDIDADGYEA------------AVAAGAPAAAALATAA------DEGPLGAACRAGLDSGVFALLAQAAAARLCADVEAAVLGXXXXXXV---------------------------TEWGALLLQREVRVLQQRLGALVEGGTLTAQFSRLQQVVQLLTLERPADAPLLHKVGATL--------------------------PTDVARAVLRLRQDFDPAAIE 705
BLAST of mRNA_S-ischiensis_contig1.208.1 vs. uniprot
Match: A0A7S2NVR4_9STRA (Conserved oligomeric Golgi complex subunit 4 (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NVR4_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.780e-12 Identity = 46/123 (37.40%), Postives = 76/123 (61.79%), Query Frame = 2
Query: 911 DPRGMDFVIDELAVVCQ----YCQRYLDFCAERVGVAEDTSSE--FFARVRVLEGVYVQLEDLYCLKSVEEAIRISEPIEVQEGVFVSSMVEDAGFLVHKSLERSVSTRSEQAIMAVCNRVTE 1261
D G+D V++ELA +CQ YCQ ++D E + + +SS+ + ++ G Y LED S++ AI I+ P+E+ +GVFV S+VEDA F+ +++ER+ ST + QA++ + NR+ E
Sbjct: 343 DVTGLDVVLEELAFLCQVSARYCQ-FIDSTLEFMSASSTSSSDRPLWLLLQEHSGQYATLEDCLSKSSLDRAIDIAAPVEIMDGVFVPSVVEDAFFVSRRAVERASSTFNSQALITLANRIAE 464
BLAST of mRNA_S-ischiensis_contig1.208.1 vs. uniprot
Match: A0A7S1XX70_9STRA (Conserved oligomeric Golgi complex subunit 4 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX70_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 3.990e-12 Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 2
Query: 1028 FFARVRVLEGVYVQLEDLYCLKSVEEAIRISEPIEVQEGV-FVSSMVEDAGFLVHKSLERSVSTRSEQAIMAVCNRVTELLDPQAPDPSFYAGLCEGT 1318
F R VL GVYV LE+ + ++++A+ IS V +G FVS++ EDA F++ KS+ R++ST QAIMAV NRV E+LDP + +P YA L + T
Sbjct: 169 FTKRAEVL-GVYVTLEETFLGANIKKALSISRMRRVGDGARFVSTLAEDAFFILKKSMGRALSTGDTQAIMAVTNRVAEMLDPASAEPLIYAALTDAT 265
BLAST of mRNA_S-ischiensis_contig1.208.1 vs. uniprot
Match: A0A0W8D5P1_PHYNI (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D5P1_PHYNI) HSP 1 Score: 71.2 bits (173), Expect = 2.120e-9 Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 2
Query: 923 MDFVIDELAVVCQYCQRYLDFCAERVGVAEDTSSEFFARVRVLEGVYVQLEDLYCLKSVEEAIRISEPIEVQEGVFVSSMVEDAGFLVHKSLERSVSTRSEQAIMAVC 1246
+D +DELA + + Y F A F +V+ L GVYV LE Y +SV +A I+EP E+++GV+VSS+VED F+++K+L R+ + M +C
Sbjct: 231 IDLFLDELAFIIRVLVSYTAFLATVCEGLGQKDGGFQVKVQELSGVYVVLERFYVFQSVHKATAIAEPQELEQGVYVSSVVEDVSFVLNKALFRASQWCVQSVFMIIC 338
BLAST of mRNA_S-ischiensis_contig1.208.1 vs. uniprot
Match: A0A2D4BSK3_PYTIN (UMP-CMP kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSK3_PYTIN) HSP 1 Score: 72.0 bits (175), Expect = 4.650e-9 Identity = 105/462 (22.73%), Postives = 180/462 (38.96%), Query Frame = 2
Query: 923 MDFVIDELAVVCQYCQRYLDFCAERVGVAEDTSSEFFAR-VRVLEGVYVQLEDLYCLKSVEEAIRISEPIEVQEGVFVSSMVEDAGFLVHKSLERSVSTRSEQAIMAVCNRVTELLDPQAPDPSFYAGLCEGTAAEATAXXXXXXXXXXGGXXXXXXXXXXXXXRGSGDLS-MALARALDEAIDEAEGGGGGSNGLCTIPEDLRGELVWVNSTHVGLFSVSAIQARGGADALERYLEASNPLVELMLEQVTRILRDYRNLRDERVGAVLAMVYDPVSRALRSGFGAASYALGPEAYEALSEDLHNVSGVLSVIKGECYASVGATSGRRRRRRSG----GPLSTVCRPSLLREPFELLVRRVSEQLCGELTEGIMAKGGATAAGSTMQRAGGXXXXXXXXXXXXXXXSGFTEWGALLLQREVRTLQKGLSGLLDTETLGEQFAPAVRLIQLLNVEKPADALQY 2290
+D +DELA V + Y F + FAR + L GVY+ LE Y +SV +A I+E E++ GV+VSSMVED F++HK++ R+ + + ++V + + + L+ S Y A X GS + ++ + L +A+DE L +D ++ +NS + V+ ++A+ ++ +A+ P +LE + + LR+ LRD G V + + ++R +R L P + ++E L + Y + G S R PL +L PFE LV L +LT+ + S + R+ F + GAL L+RE+ + ++ L +L F + LLN+ +P D + Y
Sbjct: 437 IDLFLDELAFVLRLLSSYSAFVRALCSALDCGGRSAFARKAQELNGVYLLLERFYVFQSVHKATEIAEVQELERGVYVSSMVEDVSFVLHKAVFRASQSMNYHTALSVVSAIVDALE------STYLDAIVNLPXRAFVVPVLDLENDVSSSVDGSNSLSDDSXDGSATATDVSFSDLLLQAVDED---------LTRSAQDXAKLILAINSAFLSGEFVATLEAK-----IQELADATFPDDAPLLECLPKPLRE---LRDTFRGIVAHEIQEVLTRGIRR-------TLEPRVHRVVAERLQ------FTLTPAQYDACGVQSSALHRLLESDVXRNPLLRRYEAALCAAPFEELV----VSLVSDLTQWLE---------SALVRS----------------RKPFNDLGALQLERELSATLQRVAELAPNASLRGTFTRLFHVALLLNLLQPEDVVDY 833 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.208.1 >prot_S-ischiensis_contig1.208.1 ID=prot_S-ischiensis_contig1.208.1|Name=mRNA_S-ischiensis_contig1.208.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=543bp MGPAGGRRRRRRGGQNGGGAGTSKFDPRGMDFVIDELAVVCQYCQRYLDFback to top mRNA from alignment at S-ischiensis_contig1:1345686..1358049+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig1.208.1 ID=mRNA_S-ischiensis_contig1.208.1|Name=mRNA_S-ischiensis_contig1.208.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=12364bp|location=Sequence derived from alignment at S-ischiensis_contig1:1345686..1358049+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig1:1345686..1358049+ >mRNA_S-ischiensis_contig1.208.1 ID=mRNA_S-ischiensis_contig1.208.1|Name=mRNA_S-ischiensis_contig1.208.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3258bp|location=Sequence derived from alignment at S-ischiensis_contig1:1345686..1358049+ (Schizocladia ischiensis KU_0333)back to top |