mRNA_S-ischiensis_contig1.130.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.130.1
Unique NamemRNA_S-ischiensis_contig1.130.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.130.1 vs. uniprot
Match: D7FU46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU46_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.440e-18
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 3 
Query:    9 APGKQLLVCQEAAVEPKFVFKLPLQFLSPLHVGLQRAARAWQFRLRQEEERQGLFPGGDPEAFTRGSVVVRVAVSRAQG 245
            A   +L+VCQE AVE K+ FK+PLQFL P+H  L+ AA AW+ R R+E  RQGLF   D EAF  G VVV V+VSRA+G
Sbjct:  369 AEAWELVVCQELAVEGKYTFKIPLQFLFPVHNSLKHAALAWRARARKERHRQGLF-SADEEAFAHGMVVVHVSVSRARG 446
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU46_ECTSI1.440e-1858.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:843323..844188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.130.1prot_S-ischiensis_contig1.130.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 843328..844188 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815388.3818026-UTR-S-ischiensis_contig1:843322..8433271622815388.3818026-UTR-S-ischiensis_contig1:843322..843327Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 843323..843327 +
1695739675.1272917-UTR-S-ischiensis_contig1:843322..8433271695739675.1272917-UTR-S-ischiensis_contig1:843322..843327Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 843323..843327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815388.391589-CDS-S-ischiensis_contig1:843327..8433931622815388.391589-CDS-S-ischiensis_contig1:843327..843393Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 843328..843393 +
1695739675.136253-CDS-S-ischiensis_contig1:843327..8433931695739675.136253-CDS-S-ischiensis_contig1:843327..843393Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 843328..843393 +
1622815388.4053206-CDS-S-ischiensis_contig1:844014..8441881622815388.4053206-CDS-S-ischiensis_contig1:844014..844188Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 844015..844188 +
1695739675.1448674-CDS-S-ischiensis_contig1:844014..8441881695739675.1448674-CDS-S-ischiensis_contig1:844014..844188Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 844015..844188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.130.1

>prot_S-ischiensis_contig1.130.1 ID=prot_S-ischiensis_contig1.130.1|Name=mRNA_S-ischiensis_contig1.130.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=80bp
MAPGKQLLVCQEAAVEPKFVFKLPLQFLSPLHVGLQRAARAWQFRLRQEE
ERQGLFPGGDPEAFTRGSVVVRVAVSRAQG
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mRNA from alignment at S-ischiensis_contig1:843323..844188+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.130.1 ID=mRNA_S-ischiensis_contig1.130.1|Name=mRNA_S-ischiensis_contig1.130.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=866bp|location=Sequence derived from alignment at S-ischiensis_contig1:843323..844188+ (Schizocladia ischiensis KU_0333)
GGTTGATGGCGCCAGGGAAACAGCTGCTGGTCTGCCAGGAGGCGGCCGTT
GAGCCCAAGTTCGTTTTTAAGGTGCGTTGTGATGTCGTGTCATGTGATGT
GGTGTGGTGTGATGTGATGTGATGCCAACAATATATATATATGTACTCAA
GTGGTGCTTGCCGTAGTCCCGAGGCCATTACAATAATGTGCAGTATAGTG
ATGTGCACTATCACGCCACCGCATGACATCAAATCGCATCGTATTCATAC
TACATCGCATCACAATCGCATCACGAACCGACCGCGTTTGGAGATGTCCC
CCCCTCCCCGGGAACAACTTTCGCGAGAATTGTTTCATTGATTGTTTTCT
TTCGATCGCTCGCGAGTTCCGGGCCCCGTCCTAAACTTGTACGAGTAACC
TCGCCAGAGGAGGAGAAAAACCCTTCTTTTCGCTAGGTAGTGTGATGTGA
TGTGATGTGTACTCTAATTTACTGCAGTGTGACATCATGTCACATCACAA
TGCATCACACCACATCGAAACTTGCAGCTCTCATCGCCTTCGAGGCGCTT
CACTTCGCTTCTCAGGTGCCTGCCATGGTCGCCCATTAGTCTCCCCCAAT
CCCATTCTGCTGGGTCCTGCAAAGCCCCACCTTCCCTCACTCCCTCCCCC
CCCCCTCCCTCCCCCTCCCTCCCTCCCTCCCTCCCCCCGCAGCTCCCCCT
CCAGTTCCTCTCCCCGCTACACGTCGGCCTGCAGCGTGCCGCCCGCGCCT
GGCAGTTCCGCCTCCGCCAGGAAGAGGAGCGCCAGGGCCTCTTCCCCGGT
GGCGACCCTGAAGCCTTCACCCGGGGCAGCGTCGTCGTCCGTGTGGCCGT
GTCAAGGGCGCAAGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:843323..844188+

>mRNA_S-ischiensis_contig1.130.1 ID=mRNA_S-ischiensis_contig1.130.1|Name=mRNA_S-ischiensis_contig1.130.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=480bp|location=Sequence derived from alignment at S-ischiensis_contig1:843323..844188+ (Schizocladia ischiensis KU_0333)
ATGGCGCCAGGGAAACAGCTGCTGGTCTGCCAGGAGGCGGCCGTTGAGCC
CAAGTTCGTTTTTAAGATGGCGCCAGGGAAACAGCTGCTGGTCTGCCAGG
AGGCGGCCGTTGAGCCCAAGTTCGTTTTTAAGCTCCCCCTCCAGTTCCTC
TCCCCGCTACACGTCGGCCTGCAGCGTGCCGCCCGCGCCTGGCAGTTCCG
CCTCCGCCAGGAAGAGGAGCGCCAGGGCCTCTTCCCCGGTGGCGACCCTG
AAGCCTTCACCCGGGGCAGCGTCGTCGTCCGTGTGGCCGTGTCAAGGGCG
CAAGGCCTCCCCCTCCAGTTCCTCTCCCCGCTACACGTCGGCCTGCAGCG
TGCCGCCCGCGCCTGGCAGTTCCGCCTCCGCCAGGAAGAGGAGCGCCAGG
GCCTCTTCCCCGGTGGCGACCCTGAAGCCTTCACCCGGGGCAGCGTCGTC
GTCCGTGTGGCCGTGTCAAGGGCGCAAGGC
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