prot_S-ischiensis_contig92.20941.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig92.20941.1
Unique Nameprot_S-ischiensis_contig92.20941.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length236
Homology
BLAST of mRNA_S-ischiensis_contig92.20941.1 vs. uniprot
Match: D7FPN7_ECTSI (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN7_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 2.430e-47
Identity = 96/230 (41.74%), Postives = 135/230 (58.70%), Query Frame = 0
Query:    1 MAAKVLGSGSPGHTFNAYVDPQGAILSSKIQQLTGITPQKLAAAGAKPFPSVWADFCGFLGRVAASTGGSGAGGXXXXXXXXXXXXXRPGGGRVALVAHNAPFDHRFLSQELDRAGLNRFAMGE-AGIVCMVDSLPLLQDARLWRAGSSQRRSGGSPQWDLPKPPPKYSLESVYRHLFQTDMPGAHDAQGDVEGLESVLLSPTIKNRWRYISSTIPKGQIPVVSSTSELK 229
            +AAKVLGS +P H+F  +VDP    +  +++++TGITP+ LAA GA+PFP VW +F  +L  V A     G                  G G V  VAHNA FDH+FL +E+ R G +RF MG+  G+VC+VDSL  L+++ LWR  +S         + +P  P  + L  V+ HL+  +MP AH+A GDV GLE +L +P I   WR ++S+ P  QIPV  S +EL+
Sbjct:  766 LAAKVLGSENPRHSFAEFVDPGAVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGR-----------------GEGGVVFVAHNAQFDHKFLKEEVSRCGFSRFMMGQDMGVVCIVDSLRCLKESSLWRQKASD--------FHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVPRSLAELQ 970          
BLAST of mRNA_S-ischiensis_contig92.20941.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 2.760e-47
Identity = 97/230 (42.17%), Postives = 134/230 (58.26%), Query Frame = 0
Query:    1 MAAKVLGSGSPGHTFNAYVDPQGAILSSKIQQLTGITPQKLAAAGAKPFPSVWADFCGFLGRVAASTGGSGAGGXXXXXXXXXXXXXRPGGGRVALVAHNAPFDHRFLSQELDRAGLNRFAMGE-AGIVCMVDSLPLLQDARLWRAGSSQRRSGGSPQWDLPKPPPKYSLESVYRHLFQTDMPGAHDAQGDVEGLESVLLSPTIKNRWRYISSTIPKGQIPVVSSTSELK 229
            +AAKVLGS +P H+F  Y+DP    +  +++++TGITP+ LAA GA+PFP VW +F  +L  V A     G                  G G V  VAHNA FDH+FL +EL R G +RF MG+  G+VC+VDSL  L++  LWR  +S         + +P  P  + L  V+ HL+  +MP AH+A GDV GLE +L +P I   WR ++S+ P  QIPV  S +EL+
Sbjct: 1165 LAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGR-----------------GEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASD--------FHMPTRPKNFKLGGVFEHLYGYEMPNAHNAMGDVVGLERILSAPGINEGWRGVASSHPACQIPVPRSLAELQ 1369          
BLAST of mRNA_S-ischiensis_contig92.20941.1 vs. uniprot
Match: A0A7S1Z4X3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z4X3_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.450e-16
Identity = 72/250 (28.80%), Postives = 110/250 (44.00%), Query Frame = 0
Query:    1 MAAKVLGSGSPGHTFNAYVDPQGAILSSKIQQLTGITPQKLAAAGAKP------------FPSVWADFCGFLGRVAASTGGSGAGGXXXXXXXXXXXXXRPGGGRVALVAHNAPFDHRFLSQELDRAGLNRFAMG-----------EAGIVCMVDSLPLLQDARLWRAGSSQRRSGGSPQWDLPKPPPKYSLESVYRHLFQTDMPGAHDAQGDVEGLESVLLSPTIKNRWRYISSTIPKGQIPVVSSTSE 227
            +AAKVLGS  P   F+AYV P   +    I++LTGI    L   G  P            F  V+  FC F    +                       RP    + ++AHNA FD   L   + R   +   +G           + GI   VD+L +++  +LWR  SS+  S   P+      P  + L +VY H+ +  M  AH+A GD+ GLE +L+SPT+ N W+ I++ I +    +V ++ +
Sbjct:  283 IAAKVLGSTDPSDIFSAYVRPPVRV-PPHIEKLTGIKDHFLRHGGMDPSTGEMLHGPADEFYDVYVHFCAFCKEKSEG---------------------RP----ICIMAHNAAFDINMLQAHVRRLAASYQKLGKTGKELPFLTRDTGIQTSVDTLQMMKTNKLWR--SSRTYSSALPR------PSSFGLSNVYSHILKKPMKTAHNAVGDILGLEEILMSPTL-NCWKSIANQIQEPLTLMVDASEQ 497          
BLAST of mRNA_S-ischiensis_contig92.20941.1 vs. uniprot
Match: A0A7S4MVR4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MVR4_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 5.020e-14
Identity = 74/244 (30.33%), Postives = 105/244 (43.03%), Query Frame = 0
Query:    1 MAAKVLGSGSPGHTFNAYVDPQGAILSSKIQQLTGITPQKLAAAGAKP------------FPSVWADFCGFLGRVAASTGGSGAGGXXXXXXXXXXXXXRPGGGRVALVAHNAPFDHRFLSQEL----------DRAGLNRFAMG------EAGIVCMVDSLPLLQDARLWRAGSSQRRSGGSPQWDLPKPPPKYSLESVYRHLFQTDMPGAHDAQGDVEGLESVLLSPTIKNRWRYISSTIPK 216
            +AAK LG       F+ YV P    LS KI++LTGIT   L + G  P            F  V+   C F+ R +  TG                   +P    V LVAHNAPFD R L  E+          D  G ++ A        ++GIV  +D+L + ++ RLW        S   P    PK    + L  VY H+ +  +  AH+A GDV  LE +LLS + ++ W  ++  + K
Sbjct:  111 IAAKFLGDDE---LFSRYVLPP-VELSPKIEELTGITNDFLRSGGVDPATGLRLEGPAPDFAHVYGQLCDFVRRGSRGTG-------------------KP----VCLVAHNAPFDVRMLDAEIRRLARSARRNDGGGRDKGAAAVPDLSADSGIVSSLDTLAMFRNKRLWA-------SAARPDLSAPK---SFGLGDVYYHIHREPINNAHNAGGDVNALEEILLSFSTED-WEGLAEQLIK 316          
BLAST of mRNA_S-ischiensis_contig92.20941.1 vs. uniprot
Match: A0A6U4I7J2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4I7J2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.990e-13
Identity = 68/226 (30.09%), Postives = 92/226 (40.71%), Query Frame = 0
Query:   12 GHTFNAYVDPQGAILSSKIQQLTGITPQKLAAAGAKPFPSVWADFCGFLGRVAASTGGSGA-----------GGXXXXXXXXXXXXXRPGGGR-------VALVAHNAPFDHRFLSQELDRAG--LNR--------FAMGEAGIVCMVDSLPLLQDARLWRAGSSQRRSGGSPQWDLPKP-PPKYSLESVYRHLFQTDMPGAHDAQGDVEGLESVLLSPTIKNRWR 208
            G  F+ +V P   +    + +LTGI   +L  A A+PFP+VW DF  +L R     G   A            G               G          V   AHNAPFD R L  EL R G  LN         F  G+ G+V  + +L L ++  +W               D+  P PP Y  E ++ HL   +M  AH+A GDV GLE +L+  +    WR
Sbjct: 1150 GMLFSRFVQPSKGV-PEVVAKLTGIDDDRLREAEAQPFPAVWKDFRKWLARQRLQAGIKAAVLDKMSRLSFEDGREEAELYEELAGYAAGIDPESVPLPPVVFAAHNAPFDSRMLLAELQRHGEALNLPASGLAFGFGFGQEGVVSFMCTLRLFRNKAVWH--------------DMRVPAPPSYKQEVIFEHLVGEEMSAAHNAAGDVLGLERILVESSAGPIWR 1360          
BLAST of mRNA_S-ischiensis_contig92.20941.1 vs. uniprot
Match: A0A7S4J1J6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J1J6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.450e-10
Identity = 46/142 (32.39%), Postives = 68/142 (47.89%), Query Frame = 0
Query:   91 GGRVALVAHNAPFDHRFLSQEL----------DRAGLNRFAMG------EAGIVCMVDSLPLLQDARLWRAGSSQRRSGGSPQWDLPKPPPKYSLESVYRHLFQTDMPGAHDAQGDVEGLESVLLSPTIKNRWRYISSTIPK 216
            G  V LVAHNAPFD R L  E+          D  G ++ A        ++GIV  +D+L + ++ RLW        S   P    PK    + L  VY H+ +  +  AH+A GDV  LE +LLS + ++ W  ++  + K
Sbjct:    7 GNPVCLVAHNAPFDVRMLDAEIRRLARSARRNDGGGRDKGAAAVPDLSADSGIVSSLDTLAMFRNKRLWA-------SAARPDLSAPK---SFGLGDVYYHIHREPINNAHNAGGDVNALEEILLSFSTED-WEGLAEQLIK 137          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig92.20941.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FPN7_ECTSI2.430e-4741.74ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A6H5JXY9_9PHAE2.760e-4742.17ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A7S1Z4X3_9STRA2.450e-1628.80Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4MVR4_9STRA5.020e-1430.33Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6U4I7J2_9STRA1.990e-1330.09Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4J1J6_9STRA7.450e-1032.39Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 4..208
e-value: 4.0E-25
score: 90.7
NoneNo IPR availablePANTHERPTHR13058THREE PRIME REPAIR EXONUCLEASE 1, 2coord: 13..203
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 10..199

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig92contigS-ischiensis_contig92:317901..326617 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig92.20941.1mRNA_S-ischiensis_contig92.20941.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig92 316737..326666 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig92.20941.1 ID=prot_S-ischiensis_contig92.20941.1|Name=mRNA_S-ischiensis_contig92.20941.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=236bp
MAAKVLGSGSPGHTFNAYVDPQGAILSSKIQQLTGITPQKLAAAGAKPFP
SVWADFCGFLGRVAASTGGSGAGGAAAEGQGSSGGAGRPGGGRVALVAHN
APFDHRFLSQELDRAGLNRFAMGEAGIVCMVDSLPLLQDARLWRAGSSQR
RSGGSPQWDLPKPPPKYSLESVYRHLFQTDMPGAHDAQGDVEGLESVLLS
PTIKNRWRYISSTIPKGQIPVVSSTSELKDRVLGP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf