prot_S-ischiensis_contig90.20870.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig90.20870.1
Unique Nameprot_S-ischiensis_contig90.20870.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length57
Homology
BLAST of mRNA_S-ischiensis_contig90.20870.1 vs. uniprot
Match: D8LGT1_ECTSI (RRM domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT1_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.670e-15
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 0
Query:    1 MAFVEVADAASAYQCLGLHHTRLDGRLINVERTSGGGKSRRGEAVQ 46
            MAF++V DA SAYQCL LHH+RLDGRL+NVERTSGGGK R+GE +Q
Sbjct:  228 MAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGGGKERKGERIQ 273          
BLAST of mRNA_S-ischiensis_contig90.20870.1 vs. uniprot
Match: A0A6H5KAW2_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW2_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.330e-15
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 0
Query:    1 MAFVEVADAASAYQCLGLHHTRLDGRLINVERTSGGGKSRRGEAVQ 46
            MAF++V DA SAYQCL LHH+RLDGRL+NVERTSGGGK ++GE +Q
Sbjct:  243 MAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGGGKEKKGERIQ 288          
BLAST of mRNA_S-ischiensis_contig90.20870.1 vs. uniprot
Match: A0A836CEL8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEL8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.030e-8
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0
Query:    1 MAFVEVADAASAYQCLGLHHTRLDGRLINVERTSGGGKSRRGEAVQVHLPGL 52
            MAFVE     + YQCL LHHTRLDGR++NVERTSGG    +G+A +  +  L
Sbjct:  213 MAFVETESPETLYQCLTLHHTRLDGRILNVERTSGG----KGDAHKQKISSL 260          
BLAST of mRNA_S-ischiensis_contig90.20870.1 vs. uniprot
Match: A0A7S2Q1Z8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q1Z8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.980e-7
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 0
Query:    1 MAFVEVADAASAYQCLGLHHTRLDGRLINVERTSGGGKSRR 41
            MAFVE++   + Y+CL LH T LDGR +NVERT+GGGK+ +
Sbjct:   38 MAFVELSTPETQYECLKLHLTHLDGRRLNVERTTGGGKAAK 78          
BLAST of mRNA_S-ischiensis_contig90.20870.1 vs. uniprot
Match: A0A7S4JM15_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JM15_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.220e-7
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 0
Query:    1 MAFVEVADAASAYQCLGLHHTRLDGRLINVERTSGGGK---SRRGEAVQ 46
            +AFVE  D  + Y CL LHHT LDGR INVER++GG K   +R+G+  Q
Sbjct:  286 LAFVETEDPETMYACLQLHHTTLDGRCINVERSAGGKKESETRKGKITQ 334          
BLAST of mRNA_S-ischiensis_contig90.20870.1 vs. uniprot
Match: B7FSS2_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSS2_PHATC)

HSP 1 Score: 54.3 bits (129), Expect = 4.030e-7
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 0
Query:    1 MAFVEVADAASAYQCLGLHHTRLDGRLINVERTSGGGKS 39
            MAFVEV D    Y CL LHHT L+GR +NVERT+GG KS
Sbjct:  194 MAFVEVPDPEMLYACLKLHHTFLEGRRLNVERTAGGRKS 232          
BLAST of mRNA_S-ischiensis_contig90.20870.1 vs. uniprot
Match: A0A6V2LJ41_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2LJ41_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.630e-7
Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 0
Query:    1 MAFVEVADAASAYQCLGLHHTRLDGRLINVERTSGGGK 38
            MAF+E  D    Y CL LHHT LDGR INVER++GG K
Sbjct:   93 MAFIETTDPELMYNCLKLHHTHLDGRRINVERSAGGNK 130          
BLAST of mRNA_S-ischiensis_contig90.20870.1 vs. uniprot
Match: A0A7R9ZQ95_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQ95_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.990e-6
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0
Query:    1 MAFVEVADAASAYQCLGLHHTRLDGRLINVERTSGGGKSRRGEAVQ 46
            MAFVE     S Y  L LHHT L+GR +NVER++GGG  RR + +Q
Sbjct:    1 MAFVEADTPESLYLLLKLHHTYLEGRRMNVERSAGGGSERRKQKIQ 46          
BLAST of mRNA_S-ischiensis_contig90.20870.1 vs. uniprot
Match: A0A7S1TQR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQR3_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 7.890e-5
Identity = 23/48 (47.92%), Postives = 34/48 (70.83%), Query Frame = 0
Query:    1 MAFVEVADAASAYQCLGLHHTRLDGRLINVERTSG-GGKSRRGEAVQV 47
            MAFVE+    + ++CL LHHT LDGR INVE+++G GG++    A ++
Sbjct:   65 MAFVELDTPEALHECLKLHHTMLDGRNINVEKSAGRGGRATGARATKL 112          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20870.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LGT1_ECTSI1.670e-1576.09RRM domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A6H5KAW2_9PHAE4.330e-1573.91RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CEL8_9STRA1.030e-855.77RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2Q1Z8_9STRA2.980e-758.54Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S4JM15_9STRA3.220e-755.10Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
B7FSS2_PHATC4.030e-766.67Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A6V2LJ41_9STRA5.630e-763.16Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7R9ZQ95_9STRA1.990e-654.35Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S1TQR3_9STRA7.890e-547.92Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:328890..330045 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20870.1mRNA_S-ischiensis_contig90.20870.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig90 327930..330046 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig90.20870.1 ID=prot_S-ischiensis_contig90.20870.1|Name=mRNA_S-ischiensis_contig90.20870.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=57bp
MAFVEVADAASAYQCLGLHHTRLDGRLINVERTSGGGKSRRGEAVQVHLP
GLALRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf