prot_S-ischiensis_contig9.20751.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20751.1
Unique Nameprot_S-ischiensis_contig9.20751.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length313
Homology
BLAST of mRNA_S-ischiensis_contig9.20751.1 vs. uniprot
Match: A0A7S2SVY4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVY4_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.860e-16
Identity = 52/141 (36.88%), Postives = 76/141 (53.90%), Query Frame = 0
Query:  139 DSGQAGFLRLRAQVNNYQALRGKDKKDLQKDATTSLVKSFIPVLKSFDEAEDALPLETEAEMKIHNSYAALGRQLGSKFIKLGAEPFYAVVGELYDPVKHL-VADQEYSDRHPRGTIVDCEDKGLEFDGEMIMRARAIVSL 278
            +SGQ G+LRL AQ+ N +      KKD Q  A  S+ +SF  VL + D A + +P ET+ E K+H+SY AL   + + F K G E F+A  GE Y+P  H  V + E  +    GT++D    GL      + +A+  V +
Sbjct:  103 ESGQPGYLRLAAQMENSKRQMADRKKDEQGYAQLSVFRSFAGVLDALDAATEQIPAETDNEQKLHDSYQALRADMVNTFTKQGLEEFHASPGERYEPTLHTKVEEVEVEENAAVGTVIDGVFPGLRTKTGTVRQAKVRVGI 243          
BLAST of mRNA_S-ischiensis_contig9.20751.1 vs. uniprot
Match: UPI001F22B231 (nucleotide exchange factor GrpE n=1 Tax=Synechococcus sp. Nb3U1 TaxID=1914529 RepID=UPI001F22B231)

HSP 1 Score: 69.7 bits (169), Expect = 3.560e-10
Identity = 41/138 (29.71%), Postives = 67/138 (48.55%), Query Frame = 0
Query:  142 QAGFLRLRAQVNNYQALRGKDKKDLQKDATTSLVKSFIPVLKSFDEAEDALPLETEAEMKIHNSYAALGRQLGSKFIKLGAEPFYAVVGELYDPVKHLVADQEYSDRHPRGTIVDCEDKGLEFDGEMIMRARAIVSLG 279
            +  +LRL A   NY+    ++K++  +      V   +PV+ SF+ A+  + LET+ E ++HNSY ++ R L     K+G     AV G+ +DP  H    ++ S  HP   +V     G +    +I  A   VS G
Sbjct:   78 EESYLRLYADFENYRRRTQREKEEFSQKERQKFVLEILPVVDSFERAQQQVKLETDRERELHNSYQSVYRLLVESLKKMGVSRMKAV-GQPFDPNLHEAIARQPSSEHPEDVVVTEYQAGYKLGDLVIRHAMVAVSEG 214          
BLAST of mRNA_S-ischiensis_contig9.20751.1 vs. uniprot
Match: UPI001FCAAE2A (nucleotide exchange factor GrpE n=1 Tax=Synechococcus bigranulatus TaxID=375896 RepID=UPI001FCAAE2A)

HSP 1 Score: 66.6 bits (161), Expect = 5.140e-9
Identity = 40/138 (28.99%), Postives = 67/138 (48.55%), Query Frame = 0
Query:  142 QAGFLRLRAQVNNYQALRGKDKKDLQKDATTSLVKSFIPVLKSFDEAEDALPLETEAEMKIHNSYAALGRQLGSKFIKLGAEPFYAVVGELYDPVKHLVADQEYSDRHPRGTIVDCEDKGLEFDGEMIMRARAIVSLG 279
            +  +LRL A   NY+    ++K++  +      V   +PV+ SF+ A+  + LET+ E ++HNSY ++ R L     K+G     AV G+ +DP  H    ++ S  +P   +V     G +    +I  A   VS G
Sbjct:   89 EESYLRLYADFENYRRRTQREKEEFSQKERQKFVLEILPVVDSFERAQQQVKLETDRERELHNSYQSVYRLLVESLKKMGVSRMKAV-GQPFDPNLHEAIARQPSSDYPEDVVVTEYQAGYKLGDLVIRHAMVAVSEG 225          
BLAST of mRNA_S-ischiensis_contig9.20751.1 vs. uniprot
Match: GRPE_SYNJA (Protein GrpE n=2 Tax=unclassified Synechococcus TaxID=2626047 RepID=GRPE_SYNJA)

HSP 1 Score: 63.9 bits (154), Expect = 3.130e-8
Identity = 38/138 (27.54%), Postives = 66/138 (47.83%), Query Frame = 0
Query:  142 QAGFLRLRAQVNNYQALRGKDKKDLQKDATTSLVKSFIPVLKSFDEAEDALPLETEAEMKIHNSYAALGRQLGSKFIKLGAEPFYAVVGELYDPVKHLVADQEYSDRHPRGTIVDCEDKGLEFDGEMIMRARAIVSLG 279
            +  ++RL A   NY+    ++K++  +      V   +PV+ SF+ A+  L LET+ E ++HNSY ++ R L     K+G     +V G+ +DP  H    ++ S  +P   +      G +    +I  A   VS G
Sbjct:   70 EESYIRLYADFENYRRRTQREKEEFSQKERQKFVLEILPVVDSFERAQQQLKLETDREREVHNSYQSVYRLLVECLKKMGVSRMKSV-GQPFDPNLHEAIARQPSSEYPEDVVAVEYQPGYKLGDLVIRHAMVAVSSG 206          
BLAST of mRNA_S-ischiensis_contig9.20751.1 vs. uniprot
Match: GRPE_SYNJB (Protein GrpE n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=GRPE_SYNJB)

HSP 1 Score: 63.2 bits (152), Expect = 5.770e-8
Identity = 39/135 (28.89%), Postives = 65/135 (48.15%), Query Frame = 0
Query:  145 FLRLRAQVNNYQALRGKDKKDLQKDATTSLVKSFIPVLKSFDEAEDALPLETEAEMKIHNSYAALGRQLGSKFIKLGAEPFYAVVGELYDPVKHLVADQEYSDRHPRGTIVDCEDKGLEFDGEMIMRARAIVSLG 279
            +LRL A   NY+    ++K++  +      V   +PV+ SF+ A+  L LET+ E ++HNSY ++ R L     K+G     +V G+ +DP  H    ++ S  +P   +      G +    +I  A   VS G
Sbjct:   73 YLRLYADFENYRRRTQREKEEFSQKERQKFVLEILPVVDSFERAQQQLKLETDRERELHNSYQSVYRLLVECLKKMGVSRMKSV-GQPFDPNLHEAIARQPSPDYPEDVVAVEYQPGYKLGDLVIRHAMVAVSAG 206          
BLAST of mRNA_S-ischiensis_contig9.20751.1 vs. uniprot
Match: A0A2W4K5F7_9BACT (Protein GrpE n=2 Tax=Candidatus Margulisbacteria TaxID=1817808 RepID=A0A2W4K5F7_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.910e-7
Identity = 42/133 (31.58%), Postives = 70/133 (52.63%), Query Frame = 0
Query:  145 FLRLRAQVNNYQALRGKDKKDLQKDATTSLVKSFIPVLKSFDEAEDALPLETEAEMKIHNSYAALGRQLGSKFIKLGAEPFYAVVGELYDPVKHLVADQEYSDRHPRGTIVDCEDKGLEFDGEMIMRARAIVS 277
            +LRL A+ +N++  + ++K +L K A   L+K F+ VL SFD+A   +  +T+ E  +      + +Q+ +   K   EP  AV G  +DP  H    +E SD++  G +     KG  F G+++    AIVS
Sbjct:   78 YLRLLAEFDNFKKRKEEEKINLLKSANEKLLKEFLTVLDSFDQAFLNIDEKTKNE-SVTKGLELIHKQVENFITKHHIEPIEAV-GTKFDPHVHNAVMEEDSDKYEPGVVTKELQKGYLFHGKVLRPTMAIVS 208          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20751.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S2SVY4_9STRA1.860e-1636.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI001F22B2313.560e-1029.71nucleotide exchange factor GrpE n=1 Tax=Synechococ... [more]
UPI001FCAAE2A5.140e-928.99nucleotide exchange factor GrpE n=1 Tax=Synechococ... [more]
GRPE_SYNJA3.130e-827.54Protein GrpE n=2 Tax=unclassified Synechococcus Ta... [more]
GRPE_SYNJB5.770e-828.89Protein GrpE n=3 Tax=unclassified Synechococcus Ta... [more]
A0A2W4K5F7_9BACT1.910e-731.58Protein GrpE n=2 Tax=Candidatus Margulisbacteria T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 82..105
NoneNo IPR availableCOILSCoilCoilcoord: 109..136
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..312
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availableTMHMMTMhelixcoord: 5..27
IPR000740GrpE nucleotide exchange factorPFAMPF01025GrpEcoord: 99..277
e-value: 7.6E-17
score: 61.5
IPR000740GrpE nucleotide exchange factorPANTHERPTHR21237GRPE PROTEINcoord: 75..273
IPR013805GrpE nucleotide exchange factor, coiled-coilSUPERFAMILY58014Coiled-coil domain of nucleotide exchange factor GrpEcoord: 142..221
IPR009012GrpE nucleotide exchange factor, headSUPERFAMILY51064Head domain of nucleotide exchange factor GrpEcoord: 227..277

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2954782..2958224 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20751.1mRNA_S-ischiensis_contig9.20751.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 2954642..2958907 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20751.1 ID=prot_S-ischiensis_contig9.20751.1|Name=mRNA_S-ischiensis_contig9.20751.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=313bp
MVVSAVRVACMCVVAVCGAVGGFAFQVPVRFIPTAPKLAVSRAQSPWTTR
AACGAPLFASSEQAAQQDVEAEPPAPQEDEAAEGEEEEAEEAEVVEDEAE
EGEDEDDPIKEIKAEIRELEKTLRAKRDSAAALRAKADDSGQAGFLRLRA
QVNNYQALRGKDKKDLQKDATTSLVKSFIPVLKSFDEAEDALPLETEAEM
KIHNSYAALGRQLGSKFIKLGAEPFYAVVGELYDPVKHLVADQEYSDRHP
RGTIVDCEDKGLEFDGEMIMRARAIVSLGPEGGIDSVLGEVPPAATPADE
GEGEGEDALTGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000740GrpE
IPR013805GrpE_coiled_coil
IPR009012GrpE_head