prot_S-ischiensis_contig9.20385.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20385.1
Unique Nameprot_S-ischiensis_contig9.20385.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length234
Homology
BLAST of mRNA_S-ischiensis_contig9.20385.1 vs. uniprot
Match: D8LN81_ECTSI (TBC1 domain family member 23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN81_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 2.110e-40
Identity = 108/289 (37.37%), Postives = 129/289 (44.64%), Query Frame = 0
Query:   19 SPSPLRPGRVDTVALDLRAAEEFEASGAGQLGKAVRLDPGLLLLPELEDTLEKWLQHFDTTRGCHVCLIDST-PLADHHTHA-------------------------------------------FLRMAIASEGERRGGELQGQSLWRRLLLGEGDGQSA------------------------------------VEAGMAGVSERWPGPLPLSAVLEEPFRAAKILASRLHQRGFPYVSILEGGFEGILTHMDAHQVPLEPTVISYDQNAYLQWREAWDKAQASAV 227
            SP P+RPG VDTVALD+R   ++E SGAG LGK++RLDP LL   E+ED LEKW+QHFD TRG HVCL+DS  P      +                                                         GG +    LWRRLL GEGD  +A                                        + GV E  PG         E F AAK  A RLH RGFPYVSILEGG EGI+ H+    +PLEPTVI +D  AY +WREA  +  A+A+
Sbjct:  280 SPCPMRPGAVDTVALDIRPLHDYENSGAGHLGKSLRLDPYLL---EMEDVLEKWMQHFDGTRGTHVCLVDSLDPSTGSGAYGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRIIEDPLWRRLLFGEGDPITAGGREGNADAPDWECQQQXXXXXXXXXXXXXXXXXXXXXXXVVGVVEGGPG---------EGFGAAKAFARRLHARGFPYVSILEGGMEGIVQHLKKEGIPLEPTVIDHDPEAYQRWREAQARRLAAAL 556          
BLAST of mRNA_S-ischiensis_contig9.20385.1 vs. uniprot
Match: A0A835YPX3_9STRA (TBC1 domain family member 23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPX3_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.090e-12
Identity = 66/207 (31.88%), Postives = 82/207 (39.61%), Query Frame = 0
Query:   15 GQCLSPSPLRPGRVDTVALDLRAAEEFEASGAGQLGKAVRLDPGLLLLPELEDTLEKWLQH------------------------------FDTTRGCHVCLIDSTPLADHHTHAFLRMAIASEGERRGGELQGQSLWRRLLLGEGDGQSAV--EAGMAGVSERWPGPLPLSAVLEEPFRAAKILASRLHQRGFPYVSILEGGFEGI 189
            G+C        G    V +DLR   E + SGAG L KAV +DP  L +PEL      WLQ                               FD  RG  VCL+DS+P A                         + LWRRLLLGEGDG+     E    G  ER           +  + AA  LA  L + GFP V++LEGGF+ +
Sbjct:  474 GRCFLEVGEGGGGGALVVVDLRPEGEAQRSGAGVLPKAVPVDPASLRVPELASA---WLQASRGRRFVLIRGTPPSSARAYSEDLTRAAPTFDAHRGSRVCLVDSSPRAPRPAR--------------------RQLWRRLLLGEGDGEDGDYDEPESPGPQER-----------DGHYAAAAALAQLLQRAGFPRVTVLEGGFDAL 646          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20385.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN81_ECTSI2.110e-4037.37TBC1 domain family member 23 n=2 Tax=Ectocarpus Ta... [more]
A0A835YPX3_9STRA1.090e-1231.88TBC1 domain family member 23 n=1 Tax=Tribonema min... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:77037..82575 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20385.1mRNA_S-ischiensis_contig9.20385.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 77037..82577 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20385.1 ID=prot_S-ischiensis_contig9.20385.1|Name=mRNA_S-ischiensis_contig9.20385.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=234bp
LSGGGGQEGEGGGDGQCLSPSPLRPGRVDTVALDLRAAEEFEASGAGQLG
KAVRLDPGLLLLPELEDTLEKWLQHFDTTRGCHVCLIDSTPLADHHTHAF
LRMAIASEGERRGGELQGQSLWRRLLLGEGDGQSAVEAGMAGVSERWPGP
LPLSAVLEEPFRAAKILASRLHQRGFPYVSILEGGFEGILTHMDAHQVPL
EPTVISYDQNAYLQWREAWDKAQASAVAAAEAAA
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