prot_S-ischiensis_contig88.20327.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig88.20327.1
Unique Nameprot_S-ischiensis_contig88.20327.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length141
Homology
BLAST of mRNA_S-ischiensis_contig88.20327.1 vs. uniprot
Match: D7FLZ6_ECTSI (Eukaryotic translation initiation factor 4C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ6_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 8.170e-92
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRELEFKEHGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGGDDDIGIDFDDI 140
            MPKNKGKGGKNRRRGKNENEETKRELEFKE GQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDG +DDIGIDFD+I
Sbjct:    1 MPKNKGKGGKNRRRGKNENEETKRELEFKEAGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDEI 140          
BLAST of mRNA_S-ischiensis_contig88.20327.1 vs. uniprot
Match: A0A7S2UW94_9STRA (Eukaryotic translation initiation factor 4C n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2UW94_9STRA)

HSP 1 Score: 267 bits (682), Expect = 2.740e-90
Identity = 132/140 (94.29%), Postives = 136/140 (97.14%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRELEFKEHGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGGDDDIGIDFDDI 140
            MPKNKGKGGKNRRRGKNENEETKRELEFKE GQEYAQV+RMLGNGR EC+CYDG+TRLGHIRGKMRKKVWVSAGDIVLVG RDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVD+AMEGDG DDDIGIDFDDI
Sbjct:    1 MPKNKGKGGKNRRRGKNENEETKRELEFKEDGQEYAQVIRMLGNGRCECFCYDGITRLGHIRGKMRKKVWVSAGDIVLVGLRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDIAMEGDGADDDIGIDFDDI 140          
BLAST of mRNA_S-ischiensis_contig88.20327.1 vs. uniprot
Match: A0A7S2WRV7_9STRA (Eukaryotic translation initiation factor 4C n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2WRV7_9STRA)

HSP 1 Score: 239 bits (610), Expect = 2.610e-79
Identity = 121/140 (86.43%), Postives = 130/140 (92.86%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRELEFKEHGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGGDDDIGIDFDDI 140
            MPKNKGKGGKNRRRGKN+NEE+KR+LEFKE GQEY+QVVRMLGNGR ECYC+DG TRLGHIRGKMRKKVWVSAGDIVLVG R++QDDKVDIIH+YNADEARNLK YGELPE ARINETAVDLAMEG    DDIGIDFD+I
Sbjct:    1 MPKNKGKGGKNRRRGKNDNEESKRQLEFKEPGQEYSQVVRMLGNGRCECYCFDGQTRLGHIRGKMRKKVWVSAGDIVLVGLREFQDDKVDIIHKYNADEARNLKTYGELPETARINETAVDLAMEGGDEVDDIGIDFDEI 140          
BLAST of mRNA_S-ischiensis_contig88.20327.1 vs. uniprot
Match: B7FP79_PHATC (Eukaryotic translation initiation factor 4C (Fragment) n=6 Tax=Bacillariophycidae TaxID=33850 RepID=B7FP79_PHATC)

HSP 1 Score: 232 bits (591), Expect = 1.740e-76
Identity = 113/135 (83.70%), Postives = 126/135 (93.33%), Query Frame = 0
Query:    6 GKGGKNRRRGKNENEETKRELEFKEHGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGGDDDIGIDFDDI 140
            GKGGKNRRRGK + EE+KRELEFKE GQEYAQVV+MLGNGR EC+C+DGVTRLGHIRGKMRKKVW++AGDIVLV KRD+QD+KVDI+H+Y+ADEARNLKQYGELPE ARINETAVD+AM GD  DDDIGIDFDDI
Sbjct:    1 GKGGKNRRRGKGDGEESKRELEFKEDGQEYAQVVKMLGNGRCECFCFDGVTRLGHIRGKMRKKVWITAGDIVLVAKRDFQDEKVDIVHKYSADEARNLKQYGELPETARINETAVDMAMAGDENDDDIGIDFDDI 135          
BLAST of mRNA_S-ischiensis_contig88.20327.1 vs. uniprot
Match: B5YN42_THAPS (Eukaryotic translation initiation factor 4C n=2 Tax=Thalassiosira TaxID=35127 RepID=B5YN42_THAPS)

HSP 1 Score: 231 bits (590), Expect = 2.920e-76
Identity = 116/140 (82.86%), Postives = 127/140 (90.71%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRELEFKEHGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGGDDDIGIDFDDI 140
            MPK KG+GGKNRR      EE+KRELEFKE GQEYAQVVRMLGNGR EC+CYDGVTRLGHIRGKMRKKVW++AGDIVLVGKRD+QD+KVDI+H+Y+ADEARNLKQYGELPE ARINETAVD AM G+G DDDIGIDFDDI
Sbjct:    1 MPKPKGQGGKNRRXXXXXXEESKRELEFKEEGQEYAQVVRMLGNGRCECFCYDGVTRLGHIRGKMRKKVWITAGDIVLVGKRDFQDEKVDILHKYSADEARNLKQYGELPETARINETAVDQAMAGEGDDDDIGIDFDDI 140          
BLAST of mRNA_S-ischiensis_contig88.20327.1 vs. uniprot
Match: K3WDU9_GLOUD (Eukaryotic translation initiation factor 4C n=28 Tax=Oomycota TaxID=4762 RepID=K3WDU9_GLOUD)

HSP 1 Score: 231 bits (589), Expect = 3.880e-76
Identity = 117/140 (83.57%), Postives = 127/140 (90.71%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRELEFKEHGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGGDDDIGIDFDDI 140
            MPKNKGKGGKNRRRGKN+NEE KRELEFKE GQEYAQVVRMLGNGR E YC+DGVTRLGHIRGKMRKKVWV AGDI+LV  R+YQD KVDIIH+YNADEAR+LK YGELP++ARINET VD+AMEGD  DDDIG +FDDI
Sbjct:    1 MPKNKGKGGKNRRRGKNDNEENKRELEFKEDGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETTVDMAMEGD--DDDIGFEFDDI 138          
BLAST of mRNA_S-ischiensis_contig88.20327.1 vs. uniprot
Match: A0A7S2A929_TRICV (Eukaryotic translation initiation factor 4C n=10 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S2A929_TRICV)

HSP 1 Score: 231 bits (589), Expect = 8.340e-76
Identity = 114/135 (84.44%), Postives = 125/135 (92.59%), Query Frame = 0
Query:    6 GKGGKNRRRGKNENEETKRELEFKEHGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGGDDDIGIDFDDI 140
            GKGGKNRRRGK + EE KRELEFKE GQEYAQVV+MLGNGR EC+C+DGVTRLGHIRGKMRKKVWV+AGDIVLVGKRD+QD+KVDI+H+Y ADEARNLKQYGELPE ARINETAVDLAM  + G+DDIGIDFDDI
Sbjct:   27 GKGGKNRRRGKGDGEEAKRELEFKEEGQEYAQVVKMLGNGRCECFCFDGVTRLGHIRGKMRKKVWVTAGDIVLVGKRDFQDEKVDILHKYTADEARNLKQYGELPETARINETAVDLAMTTEDGEDDIGIDFDDI 161          
BLAST of mRNA_S-ischiensis_contig88.20327.1 vs. uniprot
Match: W7TWV5_9STRA (Eukaryotic translation initiation factor 4C n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWV5_9STRA)

HSP 1 Score: 221 bits (563), Expect = 3.930e-72
Identity = 110/141 (78.01%), Postives = 125/141 (88.65%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRELEFKEHGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDG-GDDDIGIDFDDI 140
            MPKNKGKGGKNRRRGKNENEETKR+L FKE GQEY QV++MLGNGR E YC+DG  RL HIRGKMRKKVWVSAGDIVL+G RDYQ+DKVDIIH+YNADEARNLK +GELPE A+INETA+DL +EG    +D+IG+DFD+I
Sbjct:    1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141          
BLAST of mRNA_S-ischiensis_contig88.20327.1 vs. uniprot
Match: A0A0P1AHC5_PLAHL (Eukaryotic translation initiation factor 4C n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AHC5_PLAHL)

HSP 1 Score: 219 bits (557), Expect = 2.760e-69
Identity = 107/127 (84.25%), Postives = 118/127 (92.91%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRELEFKEHGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGD 127
            MPKNKGKGGKNRRRGKN+NEE KR+LEFKE GQEYAQVVRMLGNGR E YC+DGVTRLGHIRGKMRKKVWV AGDI+LV  R+YQD KVD+IH+YNADEAR+LK YGELP++ARINETAVD+AMEGD
Sbjct:    1 MPKNKGKGGKNRRRGKNDNEENKRDLEFKEDGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDVIHKYNADEARSLKAYGELPDNARINETAVDMAMEGD 127          
BLAST of mRNA_S-ischiensis_contig88.20327.1 vs. uniprot
Match: W4GJ99_9STRA (Eukaryotic translation initiation factor 4C n=8 Tax=Saprolegniaceae TaxID=4764 RepID=W4GJ99_9STRA)

HSP 1 Score: 210 bits (535), Expect = 7.260e-68
Identity = 108/136 (79.41%), Postives = 118/136 (86.76%), Query Frame = 0
Query:    5 KGKGGKNRRRGKNENEETKRELEFKEHGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGGDDDIGIDFDDI 140
            KGKGGKNRRRGK + EE KRELEFKE GQEYAQV+RMLGNGR E YCYDGVTRLGHIRGKMRKKVWV  GDIVLV  R+YQD KVDIIH+YNADEAR+LK YGELP++ARINET+VD  M+G G DDD G +FDDI
Sbjct:    8 KGKGGKNRRRGKGDVEENKRELEFKEDGQEYAQVLRMLGNGRLEAYCYDGVTRLGHIRGKMRKKVWVGVGDIVLVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETSVD--MDGAGDDDDCGFEFDDI 141          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20327.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLZ6_ECTSI8.170e-9297.14Eukaryotic translation initiation factor 4C n=1 Ta... [more]
A0A7S2UW94_9STRA2.740e-9094.29Eukaryotic translation initiation factor 4C n=2 Ta... [more]
A0A7S2WRV7_9STRA2.610e-7986.43Eukaryotic translation initiation factor 4C n=3 Ta... [more]
B7FP79_PHATC1.740e-7683.70Eukaryotic translation initiation factor 4C (Fragm... [more]
B5YN42_THAPS2.920e-7682.86Eukaryotic translation initiation factor 4C n=2 Ta... [more]
K3WDU9_GLOUD3.880e-7683.57Eukaryotic translation initiation factor 4C n=28 T... [more]
A0A7S2A929_TRICV8.340e-7684.44Eukaryotic translation initiation factor 4C n=10 T... [more]
W7TWV5_9STRA3.930e-7278.01Eukaryotic translation initiation factor 4C n=2 Ta... [more]
A0A0P1AHC5_PLAHL2.760e-6984.25Eukaryotic translation initiation factor 4C n=1 Ta... [more]
W4GJ99_9STRA7.260e-6879.41Eukaryotic translation initiation factor 4C n=8 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001253Translation initiation factor 1A (eIF-1A)SMARTSM00652eIF1neu4coord: 28..110
e-value: 5.5E-44
score: 162.1
IPR001253Translation initiation factor 1A (eIF-1A)TIGRFAMTIGR00523TIGR00523coord: 14..111
e-value: 2.1E-36
score: 121.8
IPR001253Translation initiation factor 1A (eIF-1A)PANTHERPTHR21668EIF-1Acoord: 1..138
IPR001253Translation initiation factor 1A (eIF-1A)HAMAPMF_00216aIF_1Acoord: 17..110
score: 19.567
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 32..94
e-value: 1.9E-22
score: 78.8
IPR006196RNA-binding domain, S1, IF1 typePROSITEPS50832S1_IF1_TYPEcoord: 22..96
score: 30.698
NoneNo IPR availableGENE3D2.40.50.140coord: 2..140
e-value: 1.2E-53
score: 182.4
NoneNo IPR availablePRODOMPD005579coord: 53..109
e-value: 8.0E-18
score: 217.0
IPR018104Translation initiation factor 1A (eIF-1A), conserved sitePROSITEPS01262IF1Acoord: 41..63
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..138

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:474862..481627 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20327.1mRNA_S-ischiensis_contig88.20327.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig88 474738..481933 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig88.20327.1 ID=prot_S-ischiensis_contig88.20327.1|Name=mRNA_S-ischiensis_contig88.20327.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=141bp
MPKNKGKGGKNRRRGKNENEETKRELEFKEHGQEYAQVVRMLGNGRAECY
CYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEA
RNLKQYGELPEHARINETAVDLAMEGDGGDDDIGIDFDDI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001253TIF_eIF-1A
IPR006196RNA-binding_domain_S1_IF1
IPR018104TIF_eIF-1A_CS
IPR012340NA-bd_OB-fold