prot_S-ischiensis_contig87.20282.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig87.20282.1
Unique Nameprot_S-ischiensis_contig87.20282.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length167
Homology
BLAST of mRNA_S-ischiensis_contig87.20282.1 vs. uniprot
Match: D8LRA9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRA9_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 1.010e-65
Identity = 105/152 (69.08%), Postives = 128/152 (84.21%), Query Frame = 0
Query:    4 LPELYSIHRGEVCKVEAFGCFVKLEGRRKHGLVHLSQLAPHRVENVADVCSVGDKVWAKVIEVVDGADLREQRVSLSMKLVNQSDGTDLDANNGQAETEAERRLPRGGGGGDRKPVQLGAVYNTTCTSCGGHGHLSIDCYARGGQKYDLVSE 155
            LPE++S+H+GEV K E FG F+KL+G RKHGLVH SQ+A +RVE+V DVC VGD V+AKVIEV DGAD REQR++LSMKLVNQ+DG DLD +N +AET+A+R+ P GGG  DR PVQL AV+NTTCT CG HGHLSIDC++RGG+KY+LV E
Sbjct:  234 LPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRKRPAGGG--DRAPVQLEAVFNTTCTKCGVHGHLSIDCFSRGGKKYELVDE 383          
BLAST of mRNA_S-ischiensis_contig87.20282.1 vs. uniprot
Match: A0A835YH79_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH79_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.130e-42
Identity = 98/234 (41.88%), Postives = 124/234 (52.99%), Query Frame = 0
Query:    4 LPELYSIHRGEVCKVEAFGCFVKLEGRRKHGLVHLSQLAPHRVENVADVCSVGDKVWAK------------------------------------VIEVVDGADLREQRVSLSMKLVNQSDGTDLDANNGQAETEAERRLPRGGGGGDRK-------------PVQLGAVYNTTCTSCGGHG-------------------HLSIDCYARGGQKYDLVSEGED--EPPPAMRGV 167
            LP LYS+H GEV  V+ FGCFV   G RKHGLVH SQLA +RVE+VAD  +VGDKVW K                                    VI+V +GA  RE +V++SMKLV+QS G DLD  N +A+ EA RR+   GGGG R              P++LGAV+NT C+ CG                      H+S+DC++RGGQKY+LV+E  +  EP   M+GV
Sbjct:  285 LPALYSVHHGEVASVQDFGCFVSAPGHRKHGLVHKSQLAQYRVEDVADAVAVGDKVWVKYQXXXXXXXXXXXXXXXXXXKGGXXXXXXXXXXXXKVIDVQEGATPRESKVAMSMKLVDQSTGKDLDPTNEEAQDEAARRM---GGGGXRXXXXXXXXXXAPKGPIELGAVFNTVCSKCGAXXXXXXXXXXXXXXXXXXXXXHMSVDCFSRGGQKYELVTEDLEGGEPAGGMKGV 515          
BLAST of mRNA_S-ischiensis_contig87.20282.1 vs. uniprot
Match: UPI001404228E (nucleolar protein of 40 kDa isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001404228E)

HSP 1 Score: 144 bits (363), Expect = 1.600e-39
Identity = 78/154 (50.65%), Postives = 101/154 (65.58%), Query Frame = 0
Query:    3 ALPELYSIHRGEVCKVEAFGCFVKLEGRRKHGLVHLSQLAPHRVENVADVCSVGDKVWAKVIEVVDGADLREQRVSLSMKLVNQSDGTDLDANNGQAETEAERRLPRGGGGGDRKPVQLGAVYNTTCTSCGGHGHLSIDCYA-RGGQKYDLVSE 155
            ALPELYSI +GEV  V  +G FVKL G RKHGLVH+S +   RVEN A+V  VG+KVW KVI + D  D +  +++LSMK+VNQ  G DLD +N   E +  R+        DR  +QLGAV +TTC+ CG  GH + DC++  GG KYDL+ +
Sbjct:    3 ALPELYSIIQGEVASVREYGAFVKLPGLRKHGLVHVSHMCSTRVENPAEVVDVGEKVWCKVISLEDKDDGKGMKIALSMKVVNQGTGKDLDPSNLGLEQDERRKRKFRDFSADR--IQLGAVLSTTCSKCGCKGHFAKDCFSVPGGTKYDLIPD 154          
BLAST of mRNA_S-ischiensis_contig87.20282.1 vs. uniprot
Match: A0A7S2TF11_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2TF11_9EUKA)

HSP 1 Score: 140 bits (352), Expect = 4.530e-38
Identity = 73/156 (46.79%), Postives = 102/156 (65.38%), Query Frame = 0
Query:    5 PELYSIHRGEVCKVEAFGCFVKLEGRRKHGLVHLSQLAPHRVENVADVCSVGDKVWAKVIEVV-DGADLREQRVSLSMKLVNQSDGTDLDANNGQAETEAERRLPRGGGGGDRKPVQLGAVYNTTCTSCGGHGHLSIDCYARGGQKYDLVSEGEDE 159
            P++YS+H+G V  V  +G FVKL+G    GLVH+SQLA  +V+N  DV +VG +VW KV+    D      ++VSLSMKLV+Q DG DLD +N +AE   +R   +     D K ++LGA+YNT CT CGGHGHL+  C+   G+KYDL+ + + +
Sbjct:  116 PKMYSVHQGNVVSVRDYGAFVKLDGFYAQGLVHVSQLAAWKVDNPTDVVNVGQRVWVKVVACEPDPKKEGRKKVSLSMKLVSQEDGEDLDKSNIEAEQLTDRARYQQQ---DAKRIELGAIYNTICTKCGGHGHLATQCFT--GKKYDLIEDDDKD 266          
BLAST of mRNA_S-ischiensis_contig87.20282.1 vs. uniprot
Match: A0A6J2WG69_CHACN (nucleolar protein of 40 kDa n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2WG69_CHACN)

HSP 1 Score: 136 bits (343), Expect = 4.190e-37
Identity = 77/160 (48.12%), Postives = 101/160 (63.12%), Query Frame = 0
Query:    4 LPELYSIHRGEVCKVEAFGCFVKLEGRRKHGLVHLSQLAPHRVENVADVCSVGDKVWAKVIEVVDGADLREQRVSLS--MKLVNQSDGTDLDANNGQAETEAERRLPRGGGGGDRKPVQLGAVYNTTCTSCGGHGHLSIDCYARGGQKYDLVSEGEDEPP 161
            LPELYSI RGEV  V A+G FVK+ G RK GLVH S+++  RV+N A++  VG++VW KVI    G ++++ +V LS  MK VNQ  G DLD NN  AE +  RR       G +  + L AV NTTC  CG  GH + DC+++GG +Y LV E E+  P
Sbjct:   15 LPELYSIFRGEVASVTAYGAFVKISGYRKQGLVHKSEMSACRVDNPAEIVDVGEQVWVKVI----GREIQDDKVKLSFSMKAVNQGTGQDLDPNNVMAEQDERRRRRFKDYTGQK--ITLEAVLNTTCKKCGCTGHFAKDCFSQGGLQYSLVPEEEEAEP 168          
BLAST of mRNA_S-ischiensis_contig87.20282.1 vs. uniprot
Match: A0A7S0DSP3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DSP3_9EUKA)

HSP 1 Score: 140 bits (354), Expect = 6.260e-37
Identity = 74/157 (47.13%), Postives = 101/157 (64.33%), Query Frame = 0
Query:    3 ALPELYSIHRGEVCKVEAFGCFVKLEGRRKHGLVHLSQLAPHRVENVADVCSVGDKVWAKVIEVVDGA--DLREQRVSLSMKLVNQSDGTDLDANNGQAE--TEAERRLPRGGGGGDRKPVQLGAVYNTTCTSCGGHGHLSIDCYARGGQKYDLVSE 155
            A P LY++H+G V  +  FG FVKL G    GLVH+SQ+A  +V+N  D+  VG +VW KV+ V      D   ++++LSMKLV+Q DG DLDA+N +AE  T   R+ P+     D K ++LGA+ N TCT CGGHGHL+  C+   G+KYDL+ E
Sbjct:  229 AYPTLYTVHQGNVVSIRDFGVFVKLNGYHAQGLVHISQMAKWKVDNPTDIVDVGARVWVKVVGVTADPKRDDGRKKLALSMKLVSQDDGEDLDASNIEAEALTHRARQTPQ-----DSKRIELGAILNVTCTKCGGHGHLATQCFT--GKKYDLLEE 378          
BLAST of mRNA_S-ischiensis_contig87.20282.1 vs. uniprot
Match: UPI001BE9C352 (nucleolar protein of 40 kDa n=3 Tax=Eupercaria TaxID=1489922 RepID=UPI001BE9C352)

HSP 1 Score: 135 bits (341), Expect = 1.310e-36
Identity = 75/160 (46.88%), Postives = 103/160 (64.38%), Query Frame = 0
Query:    4 LPELYSIHRGEVCKVEAFGCFVKLEGRRKHGLVHLSQLAPHRVENVADVCSVGDKVWAKVIEVVDGADLREQRVSLS--MKLVNQSDGTDLDANNGQAETEAERRLPRGGGGGDRKPVQLGAVYNTTCTSCGGHGHLSIDCYARGGQKYDLVSEGEDEPP 161
            LP +YSI +GEV  V+A+G FV+L G +K GLVH+S+++  RVEN +++  VG++VW KVI    G ++R+ +V LS  MK VNQ  G DLD NN  AE ++ RR       G+R  + L AV NTTC+ CG  GH + DC++  G +Y LV E  DE P
Sbjct:   17 LPPMYSIAKGEVVSVQAYGAFVRLPGYKKEGLVHVSEMSASRVENASEIVDVGEQVWIKVI----GREIRDDKVKLSFSMKAVNQGTGRDLDPNNVMAEQDSRRRKKFRDHTGNR--ITLEAVLNTTCSKCGCKGHFTKDCFSAPGLQYALVPEDGDEEP 170          
BLAST of mRNA_S-ischiensis_contig87.20282.1 vs. uniprot
Match: C3Y8A1_BRAFL (Uncharacterized protein (Fragment) n=4 Tax=Branchiostoma TaxID=7737 RepID=C3Y8A1_BRAFL)

HSP 1 Score: 134 bits (336), Expect = 3.920e-36
Identity = 71/154 (46.10%), Postives = 105/154 (68.18%), Query Frame = 0
Query:    4 LPELYSIHRGEVCKVEAFGCFVKLEGRRKHGLVHLSQLAPHRVENVADVCSVGDKVWAKVIEVVDGADLREQRVSLSMKLVNQSDGTDLDANNGQAETEAERRL-PRGGGGGDRKPVQLGAVYNTTCTSCGGHGHLSIDCYARG-GQKYDLVSE 155
            LP + SI +GEV  ++ +GCF+K+ G RK+GLVH SQ++  RVE+  +V  +GD+V+ KVI + +G +    ++SLSMK+VNQ DG DLD NN     E +R+  P+     +R+ + LGAV NTTC  CGG GH++ DC++ G G+KY+L+ E
Sbjct:   19 LPAMNSIFQGEVVSLQPYGCFIKIPGCRKNGLVHKSQMSASRVEDPKEVVDMGDRVYCKVISLGEGGN---GKISLSMKVVNQGDGHDLDPNNVAMSMEEQRKKNPKNY---ERQKITLGAVLNTTCRKCGGKGHMAQDCFSGGDGKKYELLPE 166          
BLAST of mRNA_S-ischiensis_contig87.20282.1 vs. uniprot
Match: UPI00097DB691 (nucleolar protein of 40 kDa n=3 Tax=Pleuronectoidei TaxID=30942 RepID=UPI00097DB691)

HSP 1 Score: 134 bits (336), Expect = 7.520e-36
Identity = 75/160 (46.88%), Postives = 102/160 (63.75%), Query Frame = 0
Query:    4 LPELYSIHRGEVCKVEAFGCFVKLEGRRKHGLVHLSQLAPHRVENVADVCSVGDKVWAKVIEVVDGADLREQRV--SLSMKLVNQSDGTDLDANNGQAETEAERRLPRGGGGGDRKPVQLGAVYNTTCTSCGGHGHLSIDCYARGGQKYDLVSEGEDEPP 161
            LP LYSI +GEV  V+A+G FV+L G +K GLVH+S+++  RVEN +++  VG++VW KVI    G ++R+ +V  S SMK VNQ  G DLD NN  AE +A RR       G+R  + L AV NTTC  CG  GH + DC++  G +Y L+ E +D  P
Sbjct:   17 LPPLYSIAKGEVVSVQAYGAFVRLPGYKKEGLVHVSEMSASRVENASEIVDVGEQVWIKVI----GKEIRDDKVKMSFSMKAVNQGTGRDLDPNNVNAEQDARRRKLFRDQTGNR--ITLEAVLNTTCAKCGCKGHFTKDCFSAPGLQYALLPEEDDVEP 170          
BLAST of mRNA_S-ischiensis_contig87.20282.1 vs. uniprot
Match: UPI001BB1C4BB (pre-mRNA-splicing factor CWC22 homolog isoform X1 n=2 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1C4BB)

HSP 1 Score: 139 bits (349), Expect = 8.920e-36
Identity = 78/153 (50.98%), Postives = 107/153 (69.93%), Query Frame = 0
Query:    5 PELYSIHRGEVCKVEAFGCFVKLEGRRKHGLVHLSQLA-PHRVENVADVCSVGDKVWAKVIEVVDGADLREQRVSLSMKLVNQSDGTDLDANNGQAETEAERRLPRGGGGGDRKPVQLGAVYNTTCTSCGGHGHLSIDCYARGGQK-YDLVSE 155
            P LY I+RGEV  ++ +G FVKL+G +K+GLVH SQ++   RVE+VA+V SVGD VW+KVI +  G D  E+++SLSMK+VNQ +G DLD N  Q + E +RR  + GG   +  ++LGAV NTTC  CG  GHL+ DC+   G+K YDL+ +
Sbjct:    5 PTLYKIYRGEVASIQPYGAFVKLDGFKKNGLVHKSQISRTKRVEDVAEVLSVGDAVWSKVISL--GED-EEKKISLSMKVVNQDNGQDLDPNMVQTKQEEQRR--KKGGYVPKPKIELGAVLNTTCKKCGTVGHLTQDCFYTPGEKTYDLIPD 152          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20282.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRA9_ECTSI1.010e-6569.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YH79_9STRA1.130e-4241.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001404228E1.600e-3950.65nucleolar protein of 40 kDa isoform X1 n=2 Tax=Pet... [more]
A0A7S2TF11_9EUKA4.530e-3846.79Hypothetical protein (Fragment) n=2 Tax=Lotharella... [more]
A0A6J2WG69_CHACN4.190e-3748.13nucleolar protein of 40 kDa n=1 Tax=Chanos chanos ... [more]
A0A7S0DSP3_9EUKA6.260e-3747.13Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
UPI001BE9C3521.310e-3646.88nucleolar protein of 40 kDa n=3 Tax=Eupercaria Tax... [more]
C3Y8A1_BRAFL3.920e-3646.10Uncharacterized protein (Fragment) n=4 Tax=Branchi... [more]
UPI00097DB6917.520e-3646.88nucleolar protein of 40 kDa n=3 Tax=Pleuronectoide... [more]
UPI001BB1C4BB8.920e-3650.98pre-mRNA-splicing factor CWC22 homolog isoform X1 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 6..82
e-value: 5.0E-13
score: 59.3
NoneNo IPR availableGENE3D2.40.50.140coord: 3..93
e-value: 1.6E-26
score: 94.2
NoneNo IPR availablePANTHERPTHR15838:SF1NUCLEOLAR PROTEIN OF 40 KDAcoord: 2..159
IPR003029S1 domainPFAMPF00575S1coord: 11..66
e-value: 3.3E-11
score: 43.4
IPR003029S1 domainPROSITEPS50126S1coord: 8..82
score: 15.634
IPR037320Nucleolar protein of 40kDaPANTHERPTHR15838FAMILY NOT NAMEDcoord: 2..159
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 129..142
score: 8.614
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 8..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:476267..481241 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20282.1mRNA_S-ischiensis_contig87.20282.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig87 476267..481241 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig87.20282.1 ID=prot_S-ischiensis_contig87.20282.1|Name=mRNA_S-ischiensis_contig87.20282.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=167bp
SAALPELYSIHRGEVCKVEAFGCFVKLEGRRKHGLVHLSQLAPHRVENVA
DVCSVGDKVWAKVIEVVDGADLREQRVSLSMKLVNQSDGTDLDANNGQAE
TEAERRLPRGGGGGDRKPVQLGAVYNTTCTSCGGHGHLSIDCYARGGQKY
DLVSEGEDEPPPAMRGV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR003029S1_domain
IPR037320pNO40
IPR001878Znf_CCHC
IPR012340NA-bd_OB-fold