prot_S-ischiensis_contig8.19800.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19800.1
Unique Nameprot_S-ischiensis_contig8.19800.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length458
Homology
BLAST of mRNA_S-ischiensis_contig8.19800.1 vs. uniprot
Match: A0A836CQW4_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQW4_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.780e-39
Identity = 87/159 (54.72%), Postives = 106/159 (66.67%), Query Frame = 0
Query:    1 MASAVIFRDDTSFQDQGVSRESLLHGPLMRRDPRDGDSPSDTPSGDDVFLISRMNDCTSYFFTWFCRRSRFRLLSAATPCPICLETVTTSIELPCGHAFCRSCLTTSAAKNFNACALCRREQVLHPEVLRAQFDERRMINLAKRLGSTGFAQTFVAPPV 159
            MAS VIF DDT     G SR ++    L  R     D P    + D+ F+++R+ND TSYF TWFC+  R RL +A + CPICL+TVT SI+L CGHAFCRSCL  SAA NF  CALCRREQ+LHP+ LR QFD+RRM NLA+RL S   +QT    P+
Sbjct:  168 MASEVIFMDDTRAVT-GTSRLAMDPATLYARHGAGADMPKGEGALDN-FIVARLNDETSYFMTWFCKHFRLRLNTAPSSCPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRLQSLPLSQTLSLSPL 324          
BLAST of mRNA_S-ischiensis_contig8.19800.1 vs. uniprot
Match: D7G6B8_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B8_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 4.420e-34
Identity = 91/217 (41.94%), Postives = 118/217 (54.38%), Query Frame = 0
Query:   47 DVFLISRMNDCTSYFFTWFCRRSRFRL--------LSAATPCPICLETVTTSIELPCGHAFCRSCLTTSAAKNFNACALCRREQVLHPEVLRAQFDERRMINLAKRLGSTGFAQTFVAPPVKPRPATSHAPEGVGVSKKHRCRSESWDSSSRLSAELRRAQASMTGSRRRKVALSNKDARARARLSDTGSLATLGHLLFGPWGDVGSMSGTELRKRW 255
            DVF++SR+ND TSYFFTWFC++ R ++            T CPICL++ T SIEL CGH+FCRSCL  SAA N  +CALCRREQ + PE LRA+FDE+RM+NLA+RL           PPV+ RP  + A                             A ++  G      A   K+ R R  +  T +  T   +LFG  GDVG+MS  +LR+RW
Sbjct:   20 DVFILSRLNDTTSYFFTWFCKKYRIQIGPPRGLGGKEEKTRCPICLDSCTKSIELQCGHSFCRSCLIQSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLA-------IPPPPVRSRPTATGA-----------------------------AMSASEG------ACEEKEVRVRVGVVPTST--TQREVLFGLGGDVGAMSSDDLRRRW 192          
BLAST of mRNA_S-ischiensis_contig8.19800.1 vs. uniprot
Match: A0A6H5JF26_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF26_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 2.370e-33
Identity = 90/218 (41.28%), Postives = 120/218 (55.05%), Query Frame = 0
Query:   47 DVFLISRMNDCTSYFFTWFCRRSRFRL--------LSAATPCPICLETVTTSIELPCGHAFCRSCLTTSAAKNFNACALCRREQVLHPEVLRAQFDERRMINLAKRLGSTGFAQTFVAPPVKPRPATSHAPEGVGVSKKHRCRSESWDSSSRLSAELRRAQASMTGSRRRKVALSNKDARARARLSDTGSLATLGHLLF-GPWGDVGSMSGTELRKRW 255
            DVF++SR+ND TSYFF WFC++ R ++            T CPICL++ T SIEL CGH+FCRSCL  SAA N  +CALCRREQ + PE LRA+FDE+RM+NLA+RL         + PP++ RP+ + A                             A ++  G      A   KD R R ++  T   +T G  +F G  GDVG+MS  +LR+RW
Sbjct:   20 DVFILSRLNDTTSYFFAWFCKKYRIQIGPPRGLGGKEENTRCPICLDSCTKSIELQCGHSFCRSCLIRSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLA-------ILPPPLRSRPSATSA-----------------------------AMSASEG------AYEEKDVRVRVKVVPT---STTGREVFVGLGGDVGAMSSDDLRRRW 192          
BLAST of mRNA_S-ischiensis_contig8.19800.1 vs. uniprot
Match: A0A4D9CMH2_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CMH2_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.510e-25
Identity = 66/169 (39.05%), Postives = 87/169 (51.48%), Query Frame = 0
Query:    1 MASAVIFRDDTSFQDQGVSRESLL------HGPLMRRDPRDGDSPSDTPSGD------DVFLISRMNDCTSYFFTWFCRRSRFRLLSAATPCPICLETVTTSIELPCGHAFCRSCLTTSAAKNFNACALCRREQVLHPEVLRAQFDERRMINLAKRLGSTGFAQTFVAP 157
            +AS + F DD S    G S   L         P         D  +    GD      DVF +SR+ND T+YFF W C+R    + +    CPICLET   SI+L CGH FCR CL  +A +  ++CALCR+   L P+VLR QF  +R  N++ RLG+T   + F  P
Sbjct:   11 VASNIHFSDDMSLPRFGTSTRLLAATCSCSSTPCAAHAATSADQAASVEDGDALEPQDDVFYLSRLNDPTTYFFQWICKRYGLTVKAEPHSCPICLETSENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDVLRQQFQTQRFANMSWRLGNTRATRVFSKP 179          
BLAST of mRNA_S-ischiensis_contig8.19800.1 vs. uniprot
Match: A0A7S3XVA3_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA3_HETAK)

HSP 1 Score: 115 bits (289), Expect = 4.540e-24
Identity = 57/111 (51.35%), Postives = 75/111 (67.57%), Query Frame = 0
Query:   47 DVFLISRMNDCTSYFFTWFCRRSRFRLLSAAT---PCPICLETVTTSIELPCGHAFCRSCLTTSAAKNFNACALCRREQVLHPEVLRAQFDERRMINLAKRLGSTGFAQTF 154
            DVFL+SRMND +SYF+TWFC+R  F+L +  T    CPICLE+   SIEL CGH+FCR CLT SA    + C LCR    L+PEVLR  F+++R+ NL +R  +    ++F
Sbjct:   40 DVFLVSRMNDESSYFYTWFCKRFEFKLKANKTYKENCPICLESELHSIELQCGHSFCRGCLTHSAEMKISCCPLCRANICLNPEVLRKNFEDQRIRNLMRRFQNVDRQKSF 150          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19800.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CQW4_9STRA1.780e-3954.72RING-type domain-containing protein n=1 Tax=Tribon... [more]
D7G6B8_ECTSI4.420e-3441.94RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JF26_9PHAE2.370e-3341.28RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A4D9CMH2_9STRA2.510e-2539.05RING-type domain-containing protein n=2 Tax=Monodo... [more]
A0A7S3XVA3_HETAK4.540e-2451.35Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 80..118
e-value: 3.9E-8
score: 43.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 80..119
score: 12.091
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 80..108
e-value: 1.0E-7
score: 31.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 72..148
e-value: 1.2E-12
score: 49.9
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 95..104
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 79..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:4099600..4102822 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19800.1mRNA_S-ischiensis_contig8.19800.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 4099538..4103308 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19800.1 ID=prot_S-ischiensis_contig8.19800.1|Name=mRNA_S-ischiensis_contig8.19800.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=458bp
MASAVIFRDDTSFQDQGVSRESLLHGPLMRRDPRDGDSPSDTPSGDDVFL
ISRMNDCTSYFFTWFCRRSRFRLLSAATPCPICLETVTTSIELPCGHAFC
RSCLTTSAAKNFNACALCRREQVLHPEVLRAQFDERRMINLAKRLGSTGF
AQTFVAPPVKPRPATSHAPEGVGVSKKHRCRSESWDSSSRLSAELRRAQA
SMTGSRRRKVALSNKDARARARLSDTGSLATLGHLLFGPWGDVGSMSGTE
LRKRWERARRAGLSPPIAPVDEVARKPALPAEVGAMSVRALAPRWRSLHS
SASRDGSAQGGSRRQLKRTRLSPPPGGPVRARFAPLAQQRLDAGEEEEGG
EDDGTVGALSRTAVQVLSSFGRGGADIGATPISELSERWHGLVCSARRGE
EAATVGQLSPSELRQRWQAASTSAGDAGAARLHVLADRLAKARAPGAMGA
RLCVPAC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR027370Znf-RING_LisH
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS