prot_S-ischiensis_contig8.19754.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19754.1
Unique Nameprot_S-ischiensis_contig8.19754.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length79
Homology
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BLAST of mRNA_S-ischiensis_contig8.19754.1 vs. uniprot
Match: D8LGL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL5_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.720e-37
Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = 0 
Query:    1 MAYAVKHQLLVFFILLLGFIAFAAWNSEDGEQNWWAMWTVPIIFLGVWLLFDLVFVNEKAFLFDHDYENWSRRVDPMY 78
            MA   KH+LL+F+I++L FIAF AW+SED E  +WAMWTVPIIFL VWLLFD +FV++KAF+FDHDYENWSRR+DPMY
Sbjct:    1 MAIQTKHKLLIFWIIMLSFIAFGAWHSEDMETPFWAMWTVPIIFLFVWLLFDCIFVDDKAFVFDHDYENWSRRMDPMY 78
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BLAST of mRNA_S-ischiensis_contig8.19754.1 vs. uniprot
Match: A0A836CKG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKG6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.050e-27
Identity = 44/75 (58.67%), Postives = 57/75 (76.00%), Query Frame = 0 
Query:    6 KHQLLVFFILLLGFIAFAAWNS-EDGEQNWWAMWTVPIIFLGVWLLFDLVFVNE-KAFLFDHDYENWSRRVDPMY 78
            +H+L+   I+    +AFAAWN+ +D    WWAMWTVPI+FL  WLL D +FV++ KAF+FDHDYENW RR+DPMY
Sbjct:    6 RHKLITLLIIXXXXVAFAAWNNTDDNNTAWWAMWTVPIMFLSFWLLMDCMFVSDDKAFIFDHDYENWRRRIDPMY 80
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19754.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGL5_ECTSI1.720e-3771.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKG6_9STRA1.050e-2758.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 33..55
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 56..78
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..23
score: 0.538
NoneNo IPR availableTMHMMTMhelixcoord: 34..56
NoneNo IPR availableTMHMMTMhelixcoord: 7..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3695321..3695557 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19754.1mRNA_S-ischiensis_contig8.19754.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 3693425..3695560 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19754.1 ID=prot_S-ischiensis_contig8.19754.1|Name=mRNA_S-ischiensis_contig8.19754.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=79bp
MAYAVKHQLLVFFILLLGFIAFAAWNSEDGEQNWWAMWTVPIIFLGVWLL
FDLVFVNEKAFLFDHDYENWSRRVDPMY*
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