prot_S-ischiensis_contig8.19744.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-ischiensis_contig8.19744.1
Unique Name	prot_S-ischiensis_contig8.19744.1
Type	polypeptide
Organism	Schizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length	176

Homology

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BLAST of mRNA_S-ischiensis_contig8.19744.1 vs. uniprot
Match: UPI0009A308CB (nuclear factor 7, brain-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A308CB)

HSP 1 Score: 58.5 bits (140), Expect = 7.370e-7
Identity = 31/89 (34.83%), Postives = 47/89 (52.81%), Query Frame = 0

Query:   87 VVSQFDMTHNSTSGRNFLSLHYVTWPFVRSPELDELWALCVSSKEEAQGEDLSKYTTCPVCLEVMFKPVVLECHHYFCHGCVLKMAADS 175
            V+  F  T      RNF     +T  F   P         ++SK++A+G  L++Y  CP+CL++  +PV+LEC H FC GC+ +   DS
Sbjct:   39 VILGFIRTAGVRINRNFRRRGKLTAEFASEPRP-------MASKQQAEG--LAEYLNCPICLDLFAEPVILECGHNFCQGCIRRYWEDS 118

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BLAST of mRNA_S-ischiensis_contig8.19744.1 vs. uniprot
Match: UPI001B7DD0E8 (zinc-binding protein A33-like n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7DD0E8)

HSP 1 Score: 55.8 bits (133), Expect = 6.020e-6
Identity = 21/49 (42.86%), Postives = 36/49 (73.47%), Query Frame = 0

Query:  127 VSSKEEAQGEDLSKYTTCPVCLEVMFKPVVLECHHYFCHGCVLKMAADS 175
            ++SK++A+G  L++Y  CP+CL++  +PV+L+C H FC GC+ +   DS
Sbjct:    1 MASKQQAEG--LAEYLNCPICLDLFMEPVILDCGHNFCQGCIRRYWEDS 47

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BLAST of mRNA_S-ischiensis_contig8.19744.1 vs. uniprot
Match: UPI0014036FE6 (zinc-binding protein A33-like n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI0014036FE6)

HSP 1 Score: 54.7 bits (130), Expect = 1.480e-5
Identity = 20/44 (45.45%), Postives = 34/44 (77.27%), Query Frame = 0

Query:  127 VSSKEEAQGEDLSKYTTCPVCLEVMFKPVVLECHHYFCHGCVLK 170
            ++SK+ A+G  L++Y  CP+CL++  +PV+LEC H FC GC+++
Sbjct:    1 MASKQHAEG--LAEYLNCPICLDLFSEPVILECGHNFCQGCIMR 42

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BLAST of mRNA_S-ischiensis_contig8.19744.1 vs. uniprot
Match: A0A401RKH0_CHIPU (Uncharacterized protein n=1 Tax=Chiloscyllium punctatum TaxID=137246 RepID=A0A401RKH0_CHIPU)

HSP 1 Score: 54.3 bits (129), Expect = 2.010e-5
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 0

Query:  134 QGEDLSKYTTCPVCLEVMFKPVVLECHHYFCHGCVLKMAADS 175
            Q E L++Y  CP+CL++  +PV+LEC H FC GC+ +   DS
Sbjct:    6 QAEGLAEYLNCPICLDLFTEPVILECGHNFCQGCIRRYWEDS 47

The following BLAST results are available for this feature:

BLAST of mRNA_S-ischiensis_contig8.19744.1 vs. uniprot

BLAST of mRNA_S-ischiensis_contig8.19744.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
UPI0009A308CB	7.370e-7	34.83	nuclear factor 7, brain-like n=1 Tax=Rhincodon typ...	[more]
UPI001B7DD0E8	6.020e-6	42.86	zinc-binding protein A33-like n=1 Tax=Carcharodon ...	[more]
UPI0014036FE6	1.480e-5	45.45	zinc-binding protein A33-like n=1 Tax=Amblyraja ra...	[more]
A0A401RKH0_CHIPU	2.010e-5	47.62	Uncharacterized protein n=1 Tax=Chiloscyllium punc...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 127..176 e-value: 3.2E-11 score: 44.6
None	No IPR available	PFAM	PF15227	zf-C3HC4_4	coord: 144..174 e-value: 2.9E-7 score: 30.5
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 137..174
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 159..168
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 144..168 score: 8.786

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-ischiensis_contig8	contig	S-ischiensis_contig8:3593527..3594702 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Schizocladia ischiensis KU_0333	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-ischiensis_contig8.19744.1	mRNA_S-ischiensis_contig8.19744.1	Schizocladia ischiensis KU_0333	mRNA	S-ischiensis_contig8 3593525..3594702 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-ischiensis_contig8.19744.1 ID=prot_S-ischiensis_contig8.19744.1|Name=mRNA_S-ischiensis_contig8.19744.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=176bp
VEAAAVLRNSPATAGAWVSSKLHHLTSARSPCLGVPSIAMAAESPRKVFD
WAARCSSPQVGGVPTGPERARHLCEAARACGEALCSVVSQFDMTHNSTSG
RNFLSLHYVTWPFVRSPELDELWALCVSSKEEAQGEDLSKYTTCPVCLEV
MFKPVVLECHHYFCHGCVLKMAADSS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR001841	Znf_RING