prot_S-ischiensis_contig8.19590.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19590.1
Unique Nameprot_S-ischiensis_contig8.19590.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length96
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19590.1 vs. uniprot
Match: A0A6H5KX93_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX93_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.980e-32
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 0 
Query:    1 MIRGDRRSNSRMDREQFDASQVRLEAMVAPEGREVKDAFSTGVNPDKTGHKEHPYQCTECPSSFPMATQLSTHLERAHSIIRHPSLITAKVAISA 95
            ++R DRR+N RMDREQFD +Q RL  + APEG +V D FSTG  PDKTG K+HP+ CT+CP SFPMAT LS HLERAH I +HPSLIT    +SA
Sbjct:  302 ILRSDRRTNIRMDREQFDGAQTRLRKL-APEGNDVCDNFSTGCRPDKTGKKDHPFVCTQCPMSFPMATLLSDHLERAHGIFKHPSLITPNKTLSA 395
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19590.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX93_9PHAE3.980e-3264.21C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.160.60coord: 30..84
e-value: 3.9E-6
score: 28.5
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 57..78
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 55..83
score: 10.325
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 50..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2378993..2383290 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19590.1mRNA_S-ischiensis_contig8.19590.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 2378762..2383341 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19590.1 ID=prot_S-ischiensis_contig8.19590.1|Name=mRNA_S-ischiensis_contig8.19590.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=96bp
MIRGDRRSNSRMDREQFDASQVRLEAMVAPEGREVKDAFSTGVNPDKTGH
KEHPYQCTECPSSFPMATQLSTHLERAHSIIRHPSLITAKVAISA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf