prot_S-ischiensis_contig8.19487.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-ischiensis_contig8.19487.1
Unique Name	prot_S-ischiensis_contig8.19487.1
Type	polypeptide
Organism	Schizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length	128

Homology

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BLAST of mRNA_S-ischiensis_contig8.19487.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 1.340e-67
Identity = 110/121 (90.91%), Postives = 118/121 (97.52%), Query Frame = 0

Query:    6 GKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSSKK 126
            GKGKGGRG KKSTTRSAKAGLQFPVGR+GR+LK+G+Y++RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK+ KK
Sbjct:    3 GKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122

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BLAST of mRNA_S-ischiensis_contig8.19487.1 vs. uniprot
Match: B7FWQ2_PHATC (Histone H2A n=9 Tax=Bacillariophyta TaxID=2836 RepID=B7FWQ2_PHATC)

HSP 1 Score: 208 bits (530), Expect = 1.520e-67
Identity = 109/123 (88.62%), Postives = 118/123 (95.93%), Query Frame = 0

Query:    1 MSGKGGKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKS 123
            MSGKG KGKGGRGDKKSTT SAKAGLQFPVGRIGRYL+QG+Y+TR+GAGAPVYLAAVLEYL AE+LELAGNAARDNKKSRI+PRHI LAV+NDEELNKLLG VTIA+GGVLPNIHA+LLPKKS
Sbjct:    1 MSGKG-KGKGGRGDKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIAAGGVLPNIHAILLPKKS 122

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BLAST of mRNA_S-ischiensis_contig8.19487.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.900e-67
Identity = 106/120 (88.33%), Postives = 115/120 (95.83%), Query Frame = 0

Query:    6 GKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSSK 125
            GKGKGGRG+KKSTT SAKAGLQFPVGRIGRYL+QG+Y+TR+GAGAPVYLAAVLEYL AE+LELAGNAARDNKKSRI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKKS K
Sbjct:    3 GKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKKSGK 122

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BLAST of mRNA_S-ischiensis_contig8.19487.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 207 bits (528), Expect = 2.700e-67
Identity = 107/120 (89.17%), Postives = 115/120 (95.83%), Query Frame = 0

Query:    6 GKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSSK 125
            GKGKGGRG KKSTT SAKAGLQFPVGRIGRYL+QG+Y+TR+GAGAPVYLAAVLEYL AE+LELAGNAARDNKKSRI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKKS+K
Sbjct:    3 GKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122

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BLAST of mRNA_S-ischiensis_contig8.19487.1 vs. uniprot
Match: A0A6U3UCP9_9STRA (Histone H2A n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UCP9_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.320e-66
Identity = 107/120 (89.17%), Postives = 115/120 (95.83%), Query Frame = 0

Query:    6 GKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSSK 125
            GKGK GRG+KKSTT SAKAGLQFPVGRIGRYL+QG+Y+TR+GAGAPVYLAAVLEYL AE+LELAGNAARDNKKSRI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKKSSK
Sbjct:   30 GKGKEGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSSK 149

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BLAST of mRNA_S-ischiensis_contig8.19487.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA)

HSP 1 Score: 206 bits (523), Expect = 2.810e-66
Identity = 107/127 (84.25%), Postives = 119/127 (93.70%), Query Frame = 0

Query:    1 MSGKGGKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSSKKA 127
            M GKG KGKGGRGDKK+ ++SAKAGLQFPVGR+GR+LKQGRY+ RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKKSRIIPRHIQLAVRNDEELNKLLG VTIA+GGVLPNIHAVLLPKK+  K+
Sbjct:    1 MGGKG-KGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSKS 126

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BLAST of mRNA_S-ischiensis_contig8.19487.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 3.390e-66
Identity = 109/119 (91.60%), Postives = 116/119 (97.48%), Query Frame = 0

Query:    6 GKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSS 124
            GKGKGGRG KKST++S+KAGLQFPV RIGRYLK+G+Y+TRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKKSS
Sbjct:    3 GKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSS 120

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BLAST of mRNA_S-ischiensis_contig8.19487.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 4.520e-66
Identity = 109/120 (90.83%), Postives = 117/120 (97.50%), Query Frame = 0

Query:    6 GKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSSK 125
            GKGKGGRG KKSTTRSAKAGLQFPVGR+GR+LK+G+Y++RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK+ K
Sbjct:   48 GKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166

[Close]

BLAST of mRNA_S-ischiensis_contig8.19487.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.730e-65
Identity = 109/119 (91.60%), Postives = 116/119 (97.48%), Query Frame = 0

Query:    6 GKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSS 124
            GKGKGGRG KKST++S+KAGLQFPV RIGRYLK+G+Y+TRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKKSS
Sbjct:   54 GKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSS 171

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BLAST of mRNA_S-ischiensis_contig8.19487.1 vs. uniprot
Match: K0S6I8_THAOC (Uncharacterized protein n=3 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S6I8_THAOC)

HSP 1 Score: 207 bits (528), Expect = 1.520e-64
Identity = 107/120 (89.17%), Postives = 115/120 (95.83%), Query Frame = 0

Query:    6 GKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSSK 125
            GKGKGGRG+KKSTT SAKAGLQFPVGRIGRYL+QG+Y+TR+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIIPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKKS K
Sbjct:    3 GKGKGGRGEKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKARIIPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSGK 122

The following BLAST results are available for this feature:

BLAST of mRNA_S-ischiensis_contig8.19487.1 vs. uniprot

BLAST of mRNA_S-ischiensis_contig8.19487.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWI9_ECTSI	1.340e-67	90.91	Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
B7FWQ2_PHATC	1.520e-67	88.62	Histone H2A n=9 Tax=Bacillariophyta TaxID=2836 Rep...	[more]
A0A448ZH28_9STRA	1.900e-67	88.33	Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re...	[more]
A0A6U2JFS4_9STRA	2.700e-67	89.17	Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep...	[more]
A0A6U3UCP9_9STRA	1.320e-66	89.17	Histone H2A n=1 Tax=Ditylum brightwellii TaxID=492...	[more]
A0A835ZLE9_9STRA	2.810e-66	84.25	Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A6H5KG79_9PHAE	3.390e-66	91.60	Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
D7G193_ECTSI	4.520e-66	90.83	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
D7FVQ5_ECTSI	1.730e-65	91.60	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
K0S6I8_THAOC	1.520e-64	89.17	Uncharacterized protein n=3 Tax=Thalassiosira ocea...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 102..120 score: 75.94 coord: 45..60 score: 90.36 coord: 60..73 score: 90.54 coord: 74..88 score: 78.35 coord: 16..38 score: 68.82
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 5..125 e-value: 5.1E-81 score: 285.1
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 94..127 e-value: 9.2E-21 score: 73.3
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 4..127 e-value: 1.1E-62 score: 211.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 6..125
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 11..91 e-value: 4.1E-16 score: 59.5
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 9..127
None	No IPR available	PANTHER	PTHR23430:SF234		coord: 9..127
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 24..30

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-ischiensis_contig8	contig	S-ischiensis_contig8:1722709..1723092 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Schizocladia ischiensis KU_0333	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-ischiensis_contig8.19487.1	mRNA_S-ischiensis_contig8.19487.1	Schizocladia ischiensis KU_0333	mRNA	S-ischiensis_contig8 1722709..1723092 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-ischiensis_contig8.19487.1 ID=prot_S-ischiensis_contig8.19487.1|Name=mRNA_S-ischiensis_contig8.19487.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=128bp
MSGKGGKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGA
PVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLL
GTVTIASGGVLPNIHAVLLPKKSSKKA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR032454	Histone_H2A_C
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR032458	Histone_H2A_CS