prot_S-ischiensis_contig79.19220.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig79.19220.1
Unique Nameprot_S-ischiensis_contig79.19220.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length297
Homology
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BLAST of mRNA_S-ischiensis_contig79.19220.1 vs. uniprot
Match: D7G420_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G420_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 3.350e-6
Identity = 141/215 (65.58%), Postives = 168/215 (78.14%), Query Frame = 0 
Query:   20 MSDLNLDPVDVERMKKRYPALGNMLGSETPK-LLDWLHRSVGLDRDQVRQVVMKYPRILAYRVDTNLEPKVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPRANTMLRRGVRPKFAAHKWVIATYTDPQFEKWLQG 233
            + D N    ++ +M KRYP + N LG + P  LL WL R + ++   +R +++++PR++AYRV +++ PK  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          PRA  M  + + P+F  HKWV++TYTD QF +WL+G
Sbjct:  182 LGDYNFSFEELNKMSKRYPTV-NTLGDKAPMPLLGWLTRELDMNHFDMRCLILRHPRLMAYRVTSHVAPKTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRSLDKRMLPRAQQMREKDIEPRFGPHKWVVSTYTDKQFTRWLEG 395
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig79.19220.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G420_ECTSI3.350e-665.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 178..209
e-value: 0.062
score: 22.4
coord: 104..136
e-value: 9.8E-4
score: 28.4
coord: 67..99
e-value: 6.4E-4
score: 29.0
coord: 141..173
e-value: 4.0E-4
score: 29.7
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 57..219
e-value: 5.8E-27
score: 94.4
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 83..215
e-value: 1.5E-25
score: 91.9
coord: 18..82
e-value: 3.4E-6
score: 28.4
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 120..229
coord: 51..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig79contigS-ischiensis_contig79:709961..714494 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig79.19220.1mRNA_S-ischiensis_contig79.19220.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig79 709955..715212 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig79.19220.1 ID=prot_S-ischiensis_contig79.19220.1|Name=mRNA_S-ischiensis_contig79.19220.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=297bp
MMLGTPGGDPVLQIQGAFKMSDLNLDPVDVERMKKRYPALGNMLGSETPK
LLDWLHRSVGLDRDQVRQVVMKYPRILAYRVDTNLEPKVAWLTERLGLDP
AELRKMVVTFPALLSRNVQENLEPKLMWLEDRLGADREQICLMVRRFPAI
WGYSTEKNLAPTVDFFENEMGGDLSQVREAIVACPAIMSRSLENRMRPRA
NTMLRRGVRPKFAAHKWVIATYTDPQFEKWLQGQVQALGASHRQYLNPGQ
DQGQDQDQGQGKGRGQAGASESVLGPGAEASTVPVPLMTGSEFNQG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf