prot_S-ischiensis_contig78.19145.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig78.19145.1
Unique Nameprot_S-ischiensis_contig78.19145.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length115
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig78.19145.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 12..90
e-value: 8.1E-6
score: 35.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 13..87
e-value: 5.5E-8
score: 32.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 11..94
score: 13.839
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..100
e-value: 1.3E-15
score: 59.3
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 12..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig78contigS-ischiensis_contig78:756517..761396 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig78.19145.1mRNA_S-ischiensis_contig78.19145.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig78 756517..761423 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig78.19145.1 ID=prot_S-ischiensis_contig78.19145.1|Name=mRNA_S-ischiensis_contig78.19145.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=115bp
MAQRAAATGGGSVFVKNLPYNMCSEKYMREIFSVFGEIRAVTIGVLPAGM
QLAGQVNGRVHVHFKEMEHALQAMEVLNNTTMSGRVVEVELWRAQGRATG
LPMGRYYSSEKEVQG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf