prot_S-ischiensis_contig77.18999.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig77.18999.1
Unique Nameprot_S-ischiensis_contig77.18999.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length190
Homology
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BLAST of mRNA_S-ischiensis_contig77.18999.1 vs. uniprot
Match: A0A6H5JMZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMZ4_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.020e-17
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 0 
Query:   35 DLFRCDTEDDLDGVSCRVDMLPEEALRDAVWSRGFDPTDADQSILVQAVMELLEYEAATGEDLRQAFY 102
            + FRC++E+DLDG +CRVDMLP+ AL + V+ RGFDP  AD+  L+ AVM+LL+YE ATGEDLR+  Y
Sbjct:   43 EAFRCESEEDLDGSACRVDMLPDSALAEMVYERGFDPDGADRLQLLDAVMQLLDYEYATGEDLREMEY 110
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig77.18999.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMZ4_9PHAE1.020e-1760.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 163..183
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..190
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..29
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..30
score: 0.661
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig77contigS-ischiensis_contig77:120411..122612 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig77.18999.1mRNA_S-ischiensis_contig77.18999.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig77 120411..122626 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig77.18999.1 ID=prot_S-ischiensis_contig77.18999.1|Name=mRNA_S-ischiensis_contig77.18999.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=190bp
MSTPRPYLLLYVLCILACSLWRGTLRVVAASTSADLFRCDTEDDLDGVSC
RVDMLPEEALRDAVWSRGFDPTDADQSILVQAVMELLEYEAATGEDLRQA
FYEAGQGQGQDESYEYQGQAPPVAEAAAADEAQAAAKEEAQEGLGEGDYS
AEEIEGTAAEGAAEAAEGAAAAVEQEEDSLVAEEVPRGDD
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