prot_S-ischiensis_contig7.18163.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig7.18163.1
Unique Nameprot_S-ischiensis_contig7.18163.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length426
Homology
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BLAST of mRNA_S-ischiensis_contig7.18163.1 vs. uniprot
Match: A0A835ZA61_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA61_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.170e-6
Identity = 33/102 (32.35%), Postives = 54/102 (52.94%), Query Frame = 0 
Query:  295 LLASKQRQLAVDLYRDAVEAGLLRPWSSIELGALDVGGMPPNVAGLALQACLDDMKTAAAPAAQEAGGVKFRRSDARNRAGGFVHDPSRDLTILLGDQQPGA 396
            LL S   +LA++  R+ ++ G++ PWSS +LG LD+  +PP ++ L L+  L DM+    P              AR     +VH PS +L +L+G +  G+
Sbjct: 1052 LLDSNHEELALEFTREGLDTGVINPWSSRDLGTLDLARLPPALSALVLKVALQDMRAPPPP------------DTAR-----YVHRPSAELNVLVGTRGGGS 1136
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig7.18163.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZA61_9STRA8.170e-632.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 145..265
e-value: 9.8E-28
score: 98.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..143
e-value: 2.3E-40
score: 140.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 111..142
e-value: 1.3E-6
score: 26.2
coord: 5..38
e-value: 1.5E-4
score: 19.7
coord: 182..215
e-value: 3.8E-4
score: 18.5
coord: 39..73
e-value: 5.5E-7
score: 27.4
coord: 76..108
e-value: 1.8E-5
score: 22.6
coord: 216..249
e-value: 0.0017
score: 16.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 72..119
e-value: 1.2E-7
score: 31.8
coord: 178..227
e-value: 4.9E-8
score: 33.1
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 32..65
e-value: 4.6E-9
score: 35.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 249..283
score: 8.309
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 214..248
score: 8.988
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 143..178
score: 6.215
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 2..36
score: 9.898
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 179..213
score: 10.424
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 108..142
score: 10.633
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 73..107
score: 10.633
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 37..67
score: 10.052
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 1..172
coord: 149..313

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig7contigS-ischiensis_contig7:2220518..2234310 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig7.18163.1mRNA_S-ischiensis_contig7.18163.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig7 2220518..2234312 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig7.18163.1 ID=prot_S-ischiensis_contig7.18163.1|Name=mRNA_S-ischiensis_contig7.18163.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=426bp
PNVHAYGALIQAYAIGRRHAEAVSALQDMWARGLQPNAVCYASAINACAR
AGQVDRAMALLDEMRDQDDLVPTVQCYTAAVSACGACGQWKRAVALLEDM
RHDGVPPNHLTFAAVIRACGASGRWQEALAMVDSMRSNGLPITIQITTAA
IEACGQARRKAEAMKILRNMQKLDGLVPDLFAYTSAIGALRECGEGREAA
ALLVEMRQKGISPNVHSYTAAVQACARGGQAQAAFDTLREMSSRSVGMNA
ATYAAAIRACGPGKDFLVALAFLEEMPTQGIRMTREVLCAGVDVLLASKQ
RQLAVDLYRDAVEAGLLRPWSSIELGALDVGGMPPNVAGLALQACLDDMK
TAAAPAAQEAGGVKFRRSDARNRAGGFVHDPSRDLTILLGDQQPGAAAAA
AAAATRDRSVPASRGRSVGTAARGGA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat