prot_S-ischiensis_contig7.18162.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig7.18162.1
Unique Nameprot_S-ischiensis_contig7.18162.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length144
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig7.18162.1 vs. uniprot
Match: D7FNK0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK0_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 7.250e-8
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 0 
Query:    4 PRPDVFTYAAAITACDRGGKWERAVRLLGEMQAAAVPPNLVCYNAAISACAK 55
            P PD+  YA  + AC  G +W++A+RLL +M AA V PN+V  N A+SACAK
Sbjct:  260 PAPDLLLYAVVMKACAWGKRWQQAIRLLDDMSAAGVAPNVVVVNTALSACAK 311
[Close]
BLAST of mRNA_S-ischiensis_contig7.18162.1 vs. uniprot
Match: A0A812R798_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812R798_9DINO)

HSP 1 Score: 56.6 bits (135), Expect = 1.070e-6
Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 0 
Query:    7 DVFTYAAAITACDRGGKWERAVRLLGEMQAAAVPPNLVCYNAAISACAKGRNQRSLD 63
            D+  Y AAI +C   G W+ AV++L +M+ A+V P+++ YNA +SAC KGR+  + D
Sbjct:   49 DLRGYTAAIASCKAAGAWQVAVQILQDMEVASVTPDVMTYNAVMSACEKGRDYDAAD 105
[Close]
BLAST of mRNA_S-ischiensis_contig7.18162.1 vs. uniprot
Match: A0A812PVU5_9DINO (SETX protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812PVU5_9DINO)

HSP 1 Score: 53.5 bits (127), Expect = 1.940e-5
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 0 
Query:    6 PDVFTYAAAITACDRGGKWERAVRLLGEMQAAAVPPNLVCYNAAISACAKG 56
            PD+ ++ + ++AC R   W+ A+ LL  +QA AV PN +CYNAA+SA   G
Sbjct: 1194 PDLISFGSVLSACARAAAWQEALALLEGLQAQAVQPNHICYNAALSALQVG 1244
[Close]
BLAST of mRNA_S-ischiensis_contig7.18162.1 vs. uniprot
Match: A0A7S2P4Y5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2P4Y5_9DINO)

HSP 1 Score: 50.8 bits (120), Expect = 5.230e-5
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 0 
Query:    3 LPRPDVFTYAAAITACDRGGKWERAVRLLGEMQAAAVP-PNLVC 45
            + RPD   Y++A++AC+RGG W  A+RLLG+M  A VP  N+VC
Sbjct:   78 IARPDAVLYSSALSACERGGHWTLALRLLGDMYKARVPYNNVVC 121
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig7.18162.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FNK0_ECTSI7.250e-851.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A812R798_9DINO1.070e-643.86Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A812PVU5_9DINO1.940e-545.10SETX protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A7S2P4Y5_9DINO5.230e-552.27Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 9..42
e-value: 0.0022
score: 16.1
coord: 44..81
e-value: 7.4E-5
score: 20.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 41..91
e-value: 9.5E-11
score: 41.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 10..35
e-value: 0.25
score: 11.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 80..114
score: 9.514
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 42..79
score: 10.052
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 7..41
score: 10.896
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 4..142
e-value: 1.4E-29
score: 105.4
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 6..56
coord: 60..112

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig7contigS-ischiensis_contig7:2216110..2220451 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig7.18162.1mRNA_S-ischiensis_contig7.18162.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig7 2216110..2220453 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig7.18162.1 ID=prot_S-ischiensis_contig7.18162.1|Name=mRNA_S-ischiensis_contig7.18162.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=144bp
PPLPRPDVFTYAAAITACDRGGKWERAVRLLGEMQAAAVPPNLVCYNAAI
SACAKGRNQRSLDAAVRLLGEMCQRGIRPDVVSYTSAMSACNRCKRWRQS
LGLWDELTREQRPPRAHGAAAGPGGTHGPSNGSWARHKGDWEEG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf