prot_S-ischiensis_contig11.2011.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig11.2011.1
Unique Nameprot_S-ischiensis_contig11.2011.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length644
Homology
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BLAST of mRNA_S-ischiensis_contig11.2011.1 vs. uniprot
Match: R1E7X7_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E7X7_EMIHU)

HSP 1 Score: 72.8 bits (177), Expect = 1.850e-10
Identity = 43/134 (32.09%), Postives = 57/134 (42.54%), Query Frame = 0 
Query:  276 CPVCLNWMDRPVSPPCGHSYCFECINSVVQAALHPPXXXXXXXXXXXXXXXXXRVPFVPTAVMPNTRLQAEMTRARVPCLHEGCGETFYPLEWKMHQEACQSAPVACVHGGVGCGFRGLRRDLPRHLAQACHYE 409
            CPVC N M  PV+PPCGHS+C +C     Q   HP                    P + ++V P++ +   +   RV C   GCG          H  AC    V C H  +GC  +  R  L +HLA  C +E
Sbjct:   63 CPVCNNVMVDPVAPPCGHSFCSKC----TQTLEHPEQGGKIECPTCAR-------PALASSVRPSSMMSWLLGGVRVRCTAPGCGHESDRSSAGAHAAACPHVLVECPHASMGCAAKVARGSLAQHLA-GCPFE 184
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2011.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R1E7X7_EMIHU1.850e-1032.09Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 422..442
NoneNo IPR availablePFAMPF15227zf-C3HC4_4coord: 276..305
e-value: 2.6E-9
score: 37.1
NoneNo IPR availablePANTHERPTHR10131:SF129TNF RECEPTOR-ASSOCIATED FACTOR 6coord: 271..362
NoneNo IPR availablePANTHERPTHR10131TNF RECEPTOR ASSOCIATED FACTORcoord: 271..362
NoneNo IPR availablePANTHERPTHR10131TNF RECEPTOR ASSOCIATED FACTORcoord: 369..449
NoneNo IPR availablePANTHERPTHR10131:SF129TNF RECEPTOR-ASSOCIATED FACTOR 6coord: 369..449
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 272..349
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 276..328
e-value: 1.8E-7
score: 40.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 276..329
score: 11.988
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 267..347
e-value: 1.8E-14
score: 54.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 348..402
e-value: 6.8E-8
score: 34.6
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 291..300
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 371..411
score: 9.737
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 350..413

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:428506..434287 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2011.1mRNA_S-ischiensis_contig11.2011.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig11 428506..434287 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig11.2011.1 ID=prot_S-ischiensis_contig11.2011.1|Name=mRNA_S-ischiensis_contig11.2011.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=644bp
EAAASTRPAGASAWRAQQEAAMGDAAPNRAGQSADGAPEGSGQGVHRPGP
HFSIRLDPGRNEALIGLPGGRYVRVPASALQTGLRLEVNPGGRSRLNGNR
NGAGSGAAGATTPQVHAAPEPSAQATTPASATAQETATSARRPEGVSQPP
TLLARVPPCPGPQTPATGPGPGPGPASSPLPSARAVEVAEGASSRPPATA
AAAGAAAAAAAATGTAGAAASTSMAADVQAAAHEGGSDGGGSSGRSPPAA
AAAAATPGAAVGAAPGAPTENSAWTCPVCLNWMDRPVSPPCGHSYCFECI
NSVVQAALHPPHPRHTRPTPRAPTCPLCRVPFVPTAVMPNTRLQAEMTRA
RVPCLHEGCGETFYPLEWKMHQEACQSAPVACVHGGVGCGFRGLRRDLPR
HLAQACHYERVKGVHQRLGGAIKQLMGQVNQLSQQMSVVQMRAQHVRGLV
MDQHQYRPWGAFHLRTLYTFFWRPEGWQQRVPWCMQTDLLRDATVVSLAP
LAVLALSVNARGSGCGLTPPTTTPDDPAAAAATTIPDLAVAASAAASMGG
WVLRALQALTWVLTWPLPFSTVLKRVDEAYKGLASECGGSPLSPQSLARL
CLLVLVTAGLSDYRNSEETAQHAAAGGGGFGGPSSAPPARPVDP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR001293Znf_TRAF
IPR008974TRAF-like