prot_S-ischiensis_contig106.1878.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig106.1878.1
Unique Nameprot_S-ischiensis_contig106.1878.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length246
Homology
BLAST of mRNA_S-ischiensis_contig106.1878.1 vs. uniprot
Match: D8LFT3_ECTSI (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT3_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 2.380e-34
Identity = 78/135 (57.78%), Postives = 92/135 (68.15%), Query Frame = 0
Query:   86 SVKEHQECHAAVESLSCRVSDAEARVREFARSMTSAAAGLEEPLSKAKDLLERGRKAEKAGVRVGDIVAYAQRVSGTSSAPAYWRPGMPMIGFAPPAPMTEMMRAGALSEFAGSTPAGSLSSVQLARLVHRLDHP 220
            +++EHQ+ HA VESL   V   E +V++ AR +T A A L  PL  AK LLE GRKAE A + V DIV YAQR+SG +SAPAYW+PGM M+GFAPPAP  EMMRAGALS FA S    SLS  +L  L   LD P
Sbjct:   62 ALREHQQLHAEVESLRQEVRYGEQQVQDCARKLTEADAALRGPLRDAKRLLEAGRKAEAAEIDVRDIVDYAQRISGITSAPAYWKPGMAMVGFAPPAPRPEMMRAGALSAFAVSPGTSSLSLPELLTLARDLDRP 196          
BLAST of mRNA_S-ischiensis_contig106.1878.1 vs. uniprot
Match: A0A835YUZ4_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ4_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.380e-18
Identity = 50/87 (57.47%), Postives = 59/87 (67.82%), Query Frame = 0
Query:  118 MTSAAAGLEEPLSKAKDLLERGRKAEKAGVRVGDIVAYAQRVSGTSSAPAYWRPGMPMIGFAPPAPMTEMMRAGALSEFAGSTPAGS 204
            +  A+A L   L  A+  L    KA  AGV V DIVAYAQR+SGT+SAPAYW+PGMPM+GF PPAP+ EMMR GAL+     T A S
Sbjct:   63 IAGASADLRHALESARKSLGEFDKACAAGVAVSDIVAYAQRISGTTSAPAYWKPGMPMVGFLPPAPLPEMMRMGALTRLNAGTAATS 149          
BLAST of mRNA_S-ischiensis_contig106.1878.1 vs. uniprot
Match: A0A7S3UVI8_HETAK (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVI8_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 1.350e-13
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 0
Query:  109 ARVREFARSMTSAAAGLEEPLSKAKDLLERGRKAEKAGVRVGDIVAYAQRVSGTSSAPAYWRPGMPMIGFAPPAPMTEMMRAGALSEFA 197
            AR R+ A +++S    L   L K K +++  R A    V +  +VAYAQR+ GT++AP YW+PGMPM+GF PPAP+ E +RAG+   +A
Sbjct:   75 ARARDLASALSSKEKDLRIALRKVKPVVDAARLANANPVSLKGLVAYAQRIGGTTAAPPYWKPGMPMVGFIPPAPLPEQIRAGSFHAYA 163          
BLAST of mRNA_S-ischiensis_contig106.1878.1 vs. uniprot
Match: A0A8K1CAS9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAS9_PYTOL)

HSP 1 Score: 73.2 bits (178), Expect = 2.180e-11
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 0
Query:   89 EHQECHAAVESLSCRVSDAEARVREFARSMTSAAAGLEEPLSKAKDLLERGRKAEKAGVRVGDIVAYAQRVSGTSSAPAYWRPGMPMIGFAPPAPMTEMMRAGALS 194
            +HQ     + ++   + + + +V  +A  +  +   +   L K + +L+  R+ +K  +   D+VAYA R++GT+SAP  WRPG PM GF PPAP  +MMRAG LS
Sbjct:   67 QHQVAQKELLAVQDEIHEKKQKVVRYAAQLRQSQEDIALVLKKHRRVLDHARQKQKVLLDPRDVVAYAHRIAGTTSAPKEWRPGFPMFGFMPPAPQEQMMRAGVLS 172          
BLAST of mRNA_S-ischiensis_contig106.1878.1 vs. uniprot
Match: F0WL35_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WL35_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.610e-11
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 0
Query:   90 HQECHAAVESLSCRVSDAEARVREFARSMTSAAAGLEEPLSKAKDLLERGRKAEKAGVRVGD--IVAYAQRVSGTSSAPAYWRPGMPMIGFAPPAPMTEMMRAGALS 194
            H+     +  L   +   E RV E+A  + +A   ++    K +  L++ RK ++  V +    +VAYA R++GT+SAP +W+PG+PM GFAPPAP  ++MRAG LS
Sbjct:   68 HRLTQKTIFQLQNEIQAKEERVIEYATQLRNAQVAIQNVFEKHQYTLQQARKPKQEQVLLDPRVVVAYAHRIAGTTSAPEHWQPGLPMSGFAPPAPQEQIMRAGVLS 174          
BLAST of mRNA_S-ischiensis_contig106.1878.1 vs. uniprot
Match: A0A024TZF4_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZF4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.740e-11
Identity = 38/110 (34.55%), Postives = 66/110 (60.00%), Query Frame = 0
Query:   87 VKEHQECHAAVESLSCRVSDAEARVREFARSMTSAAAGLEEPLSKAKDLLERGRKAEKAGVRVG--DIVAYAQRVSGTSSAPAYWRPGMPMIGFAPPAPMTEMMRAGALS 194
            + +HQ     +++L  +++D E ++  +A+ + S    +   L+K +  LE+  +   + V +   ++VAYA +++G++SAP  W+P  PM GF PPAP  EMMRAG LS
Sbjct:   64 LNQHQSAQKELDALKAQIADKEQKIVRYAKELRSGQQSIASALAKHRRTLEQCHQDSSSKVVLDPLEVVAYAHKIAGSTSAPPNWKPEYPMFGFVPPAPTPEMMRAGVLS 173          
BLAST of mRNA_S-ischiensis_contig106.1878.1 vs. uniprot
Match: W4FJC9_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FJC9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.400e-11
Identity = 45/126 (35.71%), Postives = 72/126 (57.14%), Query Frame = 0
Query:   87 VKEHQECHAAVESLSCRVSDAEARVREFARSMTSAAAGLEEPLSKAKDLLERGRK--AEKAGVRVGDIVAYAQRVSGTSSAPAYWRPGMPMIGFAPPAPMTEMMRAGALSEFAGSTPAGSLSSVQL 210
            + +HQ     +++L  +++D E ++  +A+ + S    +   L+K +  L +  +  A K  +   DIVAYA +++G++SAP  W+P  PM GF PPAP  EMMRAG LS   GST   +  +V L
Sbjct:   63 LNQHQTAQKELDALKAQIADKEQKIVRYAKELRSGQQSIASVLAKHRRTLTQCAQDAASKVVLDPLDIVAYAHKIAGSTSAPPNWQPEYPMFGFVPPAPTPEMMRAGVLSR--GSTSRATYFAVVL 186          
BLAST of mRNA_S-ischiensis_contig106.1878.1 vs. uniprot
Match: A0A024GRI1_9STRA (J domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GRI1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 7.220e-11
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 0
Query:   90 HQECHAAVESLSCRVSDAEARVREFARSMTSAAAGLEEPLSKAKDLLERGRKAEKAGVRVGD--IVAYAQRVSGTSSAPAYWRPGMPMIGFAPPAPMTEMMRAGALS 194
            HQ     +  L   +   E RV E+A  + +A   ++    K + +L++ RK ++  V +    +VAYA R++GT+SAP +W+PG+PM GFAPPAP  ++MRAG LS
Sbjct:  754 HQITQKTLFQLQNEIKAKEERVIEYATQLRNAQVAIQNVFEKHQYVLQQVRKPKQQQVFLDPQLLVAYAHRIAGTTSAPKHWQPGLPMSGFAPPAPQEQIMRAGVLS 860          
BLAST of mRNA_S-ischiensis_contig106.1878.1 vs. uniprot
Match: A0A484E4Y5_BRELC (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E4Y5_BRELC)

HSP 1 Score: 71.2 bits (173), Expect = 9.950e-11
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 0
Query:   87 VKEHQECHAAVESLSCRVSDAEARVREFARSMTSAAAGLEEPLSKAKDLLERGRKAEKAGVRVGDIVAYAQRVSGTSSAPAYWRPGMPMIGFAPPAPMTEMMRAGALS 194
            V  HQ     +  L   +S  +  + ++A  + S+   +E  L + K +L+  ++  K  +   ++VAYA R++GT+SAP  W+PG PM GF PPAP   MMRAG LS
Sbjct:   68 VARHQVAQNELLRLENDISRKKQTIIDYAAQLRSSQDAIENVLRRHKVVLQHAKQVNKKVLDPREVVAYAHRIAGTTSAPKEWQPGFPMFGFMPPAPQEHMMRAGVLS 175          
BLAST of mRNA_S-ischiensis_contig106.1878.1 vs. uniprot
Match: D0NRG4_PHYIT (Mediator of RNA polymerase II transcription subunit 4 n=24 Tax=Phytophthora TaxID=4783 RepID=D0NRG4_PHYIT)

HSP 1 Score: 70.5 bits (171), Expect = 1.830e-10
Identity = 38/105 (36.19%), Postives = 59/105 (56.19%), Query Frame = 0
Query:   90 HQECHAAVESLSCRVSDAEARVREFARSMTSAAAGLEEPLSKAKDLLERGRKAEKAGVRVGDIVAYAQRVSGTSSAPAYWRPGMPMIGFAPPAPMTEMMRAGALS 194
            HQ     +  +   + + + +V ++A  +  +   + + L K +  L+  ++  K  +   DIVAYA R++GT+SAP  W+PG PM GF PPAP   MMRAG LS
Sbjct:   69 HQVAQKELLRIEAEIENKKQKVVQYAAQLRCSQEDIADVLRKHRVTLQNAKQKSKVVLDPRDIVAYAHRIAGTTSAPKEWQPGFPMFGFMPPAPQEHMMRAGVLS 173          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1878.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LFT3_ECTSI2.380e-3457.78Mediator of RNA polymerase II transcription subuni... [more]
A0A835YUZ4_9STRA3.380e-1857.47Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3UVI8_HETAK1.350e-1344.94Mediator of RNA polymerase II transcription subuni... [more]
A0A8K1CAS9_PYTOL2.180e-1136.79Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0WL35_9STRA2.610e-1138.32Mediator of RNA polymerase II transcription subuni... [more]
A0A024TZF4_9STRA3.740e-1134.55Mediator of RNA polymerase II transcription subuni... [more]
W4FJC9_9STRA4.400e-1135.71Mediator of RNA polymerase II transcription subuni... [more]
A0A024GRI1_9STRA7.220e-1139.25J domain-containing protein n=1 Tax=Albugo candida... [more]
A0A484E4Y5_BRELC9.950e-1137.04Mediator of RNA polymerase II transcription subuni... [more]
D0NRG4_PHYIT1.830e-1036.19Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019258Mediator complex, subunit Med4PFAMPF10018Med4coord: 87..195
e-value: 1.4E-9
score: 38.0
IPR019258Mediator complex, subunit Med4PANTHERPTHR13208MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4coord: 87..203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:162297..165712 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1878.1mRNA_S-ischiensis_contig106.1878.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig106 162297..166389 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig106.1878.1 ID=prot_S-ischiensis_contig106.1878.1|Name=mRNA_S-ischiensis_contig106.1878.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=246bp
MNLHVPACWTNYVTHYAYYTGAKQAHVYCFVGTYPMSTSTRLCTCFAPIR
YGPSYSLRGHLHIKISIATLSPAPHPMPRPLPWGLSVKEHQECHAAVESL
SCRVSDAEARVREFARSMTSAAAGLEEPLSKAKDLLERGRKAEKAGVRVG
DIVAYAQRVSGTSSAPAYWRPGMPMIGFAPPAPMTEMMRAGALSEFAGST
PAGSLSSVQLARLVHRLDHPEEPQLQEDAADQDATEATGAAEASVA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019258Mediator_Med4