prot_S-ischiensis_contig1.1004.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig1.1004.1
Unique Nameprot_S-ischiensis_contig1.1004.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length303
Homology
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BLAST of mRNA_S-ischiensis_contig1.1004.1 vs. uniprot
Match: D8LQ94_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ94_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 5.960e-40
Identity = 77/164 (46.95%), Postives = 107/164 (65.24%), Query Frame = 0 
Query:    2 DLSGVHQNTALLGDLLRGHCPTVHRRLEKIGLDLIMLTPRWFIGMYAATIPSREAVAHIWDVFLWHGRRGPAVLVWVALSLLWGCRAELERCDGLKAALGVVKRHGASVTGFSSLARTAPLDIRKVMAAWEKHGQNRRVASLEDRQGPLGPEVLAQLRRAITGK 165
            DL G+H NT L+ DLL   CP V   L K+ L+LI+LTPRWFI +YA ++ ++  V  IWD+F+W+GRRGPAVLVWVAL++L GCR  +    GL A +  V+R+      F  L R AP+ + +V+AAWE+ G NR++A L D +G L   + A L   +TG+
Sbjct:  897 DLWGLHANTELVEDLLSRQCPDVMEHLRKVNLELIVLTPRWFICIYAGSMSNQSVVTRIWDLFMWYGRRGPAVLVWVALAVLHGCRKGMFESHGLPATVKAVRRYAEGCKTFDELVRQAPVGLNEVVAAWEEQGNNRKIALL-DGEGALPDRMAAGLVEEMTGE 1059
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1004.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ94_ECTSI5.960e-4046.95Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000195Rab-GTPase-TBC domainPFAMPF00566RabGAP-TBCcoord: 2..90
e-value: 2.3E-10
score: 40.5
IPR000195Rab-GTPase-TBC domainPROSITEPS50086TBC_RABGAPcoord: 1..68
score: 12.101
NoneNo IPR availableGENE3D1.10.472.80coord: 1..117
e-value: 7.6E-15
score: 56.8
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 2..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:6946879..6951269 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1004.1mRNA_S-ischiensis_contig1.1004.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig1 6946692..6952950 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig1.1004.1 ID=prot_S-ischiensis_contig1.1004.1|Name=mRNA_S-ischiensis_contig1.1004.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=303bp
MDLSGVHQNTALLGDLLRGHCPTVHRRLEKIGLDLIMLTPRWFIGMYAAT
IPSREAVAHIWDVFLWHGRRGPAVLVWVALSLLWGCRAELERCDGLKAAL
GVVKRHGASVTGFSSLARTAPLDIRKVMAAWEKHGQNRRVASLEDRQGPL
GPEVLAQLRRAITGKIQLPELELPAETEQEAGHQAGSGTRQGGGLGALFL
SVTPTAGGSGPATPAQRGAQTASPPQRPESPFMVAVKSWLGGNNGGNGGG
GSGSNSVAGGGGGGGGGGSGSPRASGRLEHLGTIAVTAPAGPRAAHASSG
RW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000195Rab-GTPase-TBC_dom
IPR035969Rab-GTPase_TBC_sf