mRNA_S-ischiensis_contig98.21149.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig98.21149.1
Unique NamemRNA_S-ischiensis_contig98.21149.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig98.21149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig98contigS-ischiensis_contig98:233368..235412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size328
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817437.5035875-CDS-S-ischiensis_contig98:233368..2334381622817437.5035875-CDS-S-ischiensis_contig98:233368..233438Schizocladia ischiensis KU_0333CDSS-ischiensis_contig98 233369..233438 -
1695741115.8053827-CDS-S-ischiensis_contig98:233368..2334381695741115.8053827-CDS-S-ischiensis_contig98:233368..233438Schizocladia ischiensis KU_0333CDSS-ischiensis_contig98 233369..233438 -
1622817437.5147913-CDS-S-ischiensis_contig98:235155..2354121622817437.5147913-CDS-S-ischiensis_contig98:235155..235412Schizocladia ischiensis KU_0333CDSS-ischiensis_contig98 235156..235412 -
1695741115.8174114-CDS-S-ischiensis_contig98:235155..2354121695741115.8174114-CDS-S-ischiensis_contig98:235155..235412Schizocladia ischiensis KU_0333CDSS-ischiensis_contig98 235156..235412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig98.21149.1prot_S-ischiensis_contig98.21149.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig98 233369..235412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig98.21149.1

>prot_S-ischiensis_contig98.21149.1 ID=prot_S-ischiensis_contig98.21149.1|Name=mRNA_S-ischiensis_contig98.21149.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=109bp
HWWWRPTWNRRGMAALGQHGDRMRHVVQGQFDDVCSGSDTDEKPQEREPQ
GQPKPALRRRAGKRRGREKKVSASLFFSDRSSAVTSAGVLSEADGWRLGR
SSASAGNVA
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mRNA from alignment at S-ischiensis_contig98:233368..235412-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig98.21149.1 ID=mRNA_S-ischiensis_contig98.21149.1|Name=mRNA_S-ischiensis_contig98.21149.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2045bp|location=Sequence derived from alignment at S-ischiensis_contig98:233368..235412- (Schizocladia ischiensis KU_0333)
CACTGGTGGTGGCGTCCTACTTGGAACCGGAGGGGAATGGCTGCGCTTGG
GCAGCATGGCGACCGTATGCGGCACGTGGTCCAGGGCCAGTTCGACGACG
TCTGCTCGGGTTCGGACACGGACGAGAAGCCGCAAGAAAGGGAGCCTCAG
GGGCAGCCCAAGCCCGCCCTCCGCCGCCGCGCCGGGAAGCGCCGGGGCCG
CGAGAAGAAAGTTTCGGCATCCCTCTTCTTCAGCGACCGCAGCTCGGCAG
TCACCAGGTGAGACGCCCGCTGGCGGGTGCCAAACAGGAGCACAAGTGCC
TTGGGCCATCCGCACATAGCCCTGTCGCGTTTTTCACTAGTGTAGCTTAG
GAGTGGAGAGCCCCCGGTGGCTGCTCCCCCGGACGGGGCGGCTGTTGTGC
ATTTTCATGAAGCTGGAGGCCGAGCCAAGTGACTTGGCTCCAGGGACGAT
GCGCTATGCACGCGGCGGGCTCCGGAGTGGCGACTGTCGGCTGCTGGGGA
CGGCCCCGCCCTAAAGGTTCTGGTATGTTCCAGGCATTGGAAAAGGGGTT
GTCGAGCGATAACGAGGTCGGCCCGGGACCACCCTCCCCGTCCACGGTGA
ATGAACACCGGAGGACCCAAGGACCTCGGAGATTGTCGGCGACGGAGTCG
AGCGACGCCGCTACGGTGCACACACTGTAGTGTCTGTACCTCTAAGTTCA
GCACAGAGAACTTGACTGGTTGCTGTGCAGCAGTTGTTACTGTTTCTCTC
GAGGCATCTACTGTAGTTGCCGCTCCCTGACTCGTTAACCCCCGGAAAGG
TGCAGACGCGCACTGTACTGCTCACAGTGCTGTACTAGTTGCCACCTGAC
AGTATATATTTGTGTGTGTGTGTGTGTCTCATAGGTTTCTCGTGCGACAT
AACCTTGCGTGCAATGCCGACAGCCCTAATTCGAAACTTCGTGCAGGGGT
AATTAGACACTACATGCATGTAGTACTGTGCTGTATGCTTCGTATATACT
TCGAAGTATACATAGGAATCCCCGTCGTTCCGTGCACACACCCCGGGGGG
GCAAGGGCTAACAATCTCTAGTACCCCCTCTGTGGTCTGGCTGCTGCTTT
ACGTTTGCCAACAAAGTGTGGCGAGGCCCATTGCTGTTGAGTTGGTTGGG
CGGTGTGGAACGCACCTTGCTGGCTGTTGTTTGTACTCTCCAGTACCCCC
GCAAACATGCCCGGTGGCATCCACTCGCCGCAATCGAATGCTTTCATGGT
GCTTGGGCCTCGTTGTATGAGTGCTTCGAAGTAGATTCAGCTGTACCTCT
TACTGTGTCCTAGTATGTTCAACTACTGTGTCCTAGTATGTTCAACTATT
CGGTGGTCTCGGGACAACGGTAGAGCACAGCATGGGTACTGCGCCTACAC
ACATACTTCCATGCAGCAAGCACACAGTGATTGCATATTTGCATGTGTGC
GTAAGAGTCTCTTGTGCTTGCCGTAGAGCACCCAAGTAGTTAGGGGATGT
AATGCTGTGGTTTGATGTCATGCGATGCGGCGTCTACCTACTCTAATGCG
CTGCAGTGTGGCATCGCATCACATCGCATGACATCGAGCCGGCCGTAATG
CTCTGGCTCGCAGCGATGGAATATCTGAGCAAATCAACCCATTTATTGAC
AGTACTGATCGAGTATTTTGAGTGGTAGATAAGCGGCGAGTTCCAGGCCC
CGTGCCAAAAGGCGCGTCCCGAAACGGGACGCAACGAAGCCCTTCTTCCC
CTCGCACGGCAAGAATAAAATAAAATGAAAGAAGCAACTGGGCGGGGCAG
GGAAAAGGAAGGGGCGGGAAAGGGGAGTCTCTTGTGCTCACAGTGGGGCA
TGCGATCGAGTATGTATCTATCAATAGTCGATATTCGATAGTTAGTACTC
GTAACACCACCCACAAAATAAGTCGCCTGAGCCCGATATCTACTGATCGA
TATTCCCTCACTGCTGGCTCGCAGCGCGGGCGTCCTCTCCGAGGCAGACG
GCTGGCGGCTGGGCAGGTCATCAGCATCTGCAGGCAACGTCGCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig98:233368..235412-

>mRNA_S-ischiensis_contig98.21149.1 ID=mRNA_S-ischiensis_contig98.21149.1|Name=mRNA_S-ischiensis_contig98.21149.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=654bp|location=Sequence derived from alignment at S-ischiensis_contig98:233368..235412- (Schizocladia ischiensis KU_0333)
CACTGGTGGTGGCGTCCTACTTGGAACCGGAGGGGAATGGCTGCGCTTGG
GCAGCATGGCGACCGTATGCGGCACGTGGTCCAGGGCCAGTTCGACGACG
TCTGCTCGGGTTCGGACACGGACGAGAAGCCGCAAGAAAGGGAGCCTCAG
GGGCAGCCCAAGCCCGCCCTCCGCCGCCGCGCCGGGAAGCGCCGGGGCCG
CGAGAAGAAAGTTTCGGCATCCCTCTTCTTCAGCGACCGCAGCTCGGCAG
TCACCAGCACTGGTGGTGGCGTCCTACTTGGAACCGGAGGGGAATGGCTG
CGCTTGGGCAGCATGGCGACCGTATGCGGCACGTGGTCCAGGGCCAGTTC
GACGACGTCTGCTCGGGTTCGGACACGGACGAGAAGCCGCAAGAAAGGGA
GCCTCAGGGGCAGCCCAAGCCCGCCCTCCGCCGCCGCGCCGGGAAGCGCC
GGGGCCGCGAGAAGAAAGTTTCGGCATCCCTCTTCTTCAGCGACCGCAGC
TCGGCAGTCACCAGCGCGGGCGTCCTCTCCGAGGCAGACGGCTGGCGGCT
GGGCAGGTCATCAGCATCTGCAGGCAACGTCGCCCGCGGGCGTCCTCTCC
GAGGCAGACGGCTGGCGGCTGGGCAGGTCATCAGCATCTGCAGGCAACGT
CGCC
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