mRNA_S-ischiensis_contig98.21147.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig98.21147.1
Unique NamemRNA_S-ischiensis_contig98.21147.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig98.21147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig98contigS-ischiensis_contig98:120027..120566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size540
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig98.21147.1prot_S-ischiensis_contig98.21147.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig98 120032..120427 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817437.9063919-UTR-S-ischiensis_contig98:120026..1200311622817437.9063919-UTR-S-ischiensis_contig98:120026..120031Schizocladia ischiensis KU_0333UTRS-ischiensis_contig98 120027..120031 +
1695741116.0668652-UTR-S-ischiensis_contig98:120026..1200311695741116.0668652-UTR-S-ischiensis_contig98:120026..120031Schizocladia ischiensis KU_0333UTRS-ischiensis_contig98 120027..120031 +
1622817437.934735-UTR-S-ischiensis_contig98:120427..1205661622817437.934735-UTR-S-ischiensis_contig98:120427..120566Schizocladia ischiensis KU_0333UTRS-ischiensis_contig98 120428..120566 +
1695741116.086978-UTR-S-ischiensis_contig98:120427..1205661695741116.086978-UTR-S-ischiensis_contig98:120427..120566Schizocladia ischiensis KU_0333UTRS-ischiensis_contig98 120428..120566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817437.9217286-CDS-S-ischiensis_contig98:120031..1204271622817437.9217286-CDS-S-ischiensis_contig98:120031..120427Schizocladia ischiensis KU_0333CDSS-ischiensis_contig98 120032..120427 +
1695741116.0765183-CDS-S-ischiensis_contig98:120031..1204271695741116.0765183-CDS-S-ischiensis_contig98:120031..120427Schizocladia ischiensis KU_0333CDSS-ischiensis_contig98 120032..120427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig98.21147.1

>prot_S-ischiensis_contig98.21147.1 ID=prot_S-ischiensis_contig98.21147.1|Name=mRNA_S-ischiensis_contig98.21147.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=132bp
MSPRIHPTCYLQYKDEGRSGPRHAQRRGTRPNKTLVATVPNPAWRGRRRG
LVGASLIHGRLAIGPRIEPPPPAGQSIRRKNGSFVGLVPGAGVHLVLLVS
MASGRMPLRRGRIRRFPRPYTVGGSLATKKE*
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mRNA from alignment at S-ischiensis_contig98:120027..120566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig98.21147.1 ID=mRNA_S-ischiensis_contig98.21147.1|Name=mRNA_S-ischiensis_contig98.21147.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=540bp|location=Sequence derived from alignment at S-ischiensis_contig98:120027..120566+ (Schizocladia ischiensis KU_0333)
AGCCAATGTCCCCTCGTATTCATCCCACATGTTACTTACAGTACAAAGAC
GAGGGTCGTTCGGGTCCACGGCATGCACAGAGACGTGGAACTCGTCCGAA
CAAAACTTTAGTCGCTACCGTTCCAAACCCCGCTTGGAGGGGCCGCCGAC
GGGGCCTCGTCGGGGCAAGTCTGATTCACGGGCGCCTTGCCATTGGGCCA
CGCATCGAGCCGCCCCCCCCGGCGGGCCAAAGTATTCGGAGAAAGAACGG
ATCTTTCGTGGGTCTGGTCCCAGGTGCCGGGGTGCATCTCGTGCTATTGG
TTAGTATGGCCTCCGGTCGGATGCCGTTGCGCCGAGGTCGTATCAGAAGG
TTCCCCCGACCGTATACAGTCGGCGGAAGCCTCGCTACAAAAAAGGAGTA
AAATTTGCCCAGAATGGGAAAGGAAAAAGGTACGAATGTTGCCCCAAAAG
TGGCCAACTATTGCCCAAAAAGGAGCCCGACCCGCCGGGTCTGGGCATCA
GCCCGCCGGGTCCGGCCCCGATCGGCCGATGTGACCTGGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig98:120027..120566+

>mRNA_S-ischiensis_contig98.21147.1 ID=mRNA_S-ischiensis_contig98.21147.1|Name=mRNA_S-ischiensis_contig98.21147.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=792bp|location=Sequence derived from alignment at S-ischiensis_contig98:120027..120566+ (Schizocladia ischiensis KU_0333)
ATGTCCCCTCGTATTCATCCCACATGTTACTTACAGTACAAAGACGAGGG
TCGTTCGGGTCCACGGCATGCACAGAGACGTGGAACTCGTCCGAACAAAA
CTTTAGTCGCTACCGTTCCAAACCCCGCTTGGAGGGGCCGCCGACGGGGC
CTCGTCGGGGCAAGTCTGATTCACGGGCGCCTTGCCATTGGGCCACGCAT
CGAGCCGCCCCCCCCGGCGGGCCAAAGTATTCGGAGAAAGAACGGATCTT
TCGTGGGTCTGGTCCCAGGTGCCGGGGTGCATCTCGTGCTATTGGTTAGT
ATGGCCTCCGGTCGGATGCCGTTGCGCCGAGGTCGTATCAGAAGGTTCCC
CCGACCGTATACAGTCGGCGGAAGCCTCGCTACAAAAAAGGAGTAAATGT
CCCCTCGTATTCATCCCACATGTTACTTACAGTACAAAGACGAGGGTCGT
TCGGGTCCACGGCATGCACAGAGACGTGGAACTCGTCCGAACAAAACTTT
AGTCGCTACCGTTCCAAACCCCGCTTGGAGGGGCCGCCGACGGGGCCTCG
TCGGGGCAAGTCTGATTCACGGGCGCCTTGCCATTGGGCCACGCATCGAG
CCGCCCCCCCCGGCGGGCCAAAGTATTCGGAGAAAGAACGGATCTTTCGT
GGGTCTGGTCCCAGGTGCCGGGGTGCATCTCGTGCTATTGGTTAGTATGG
CCTCCGGTCGGATGCCGTTGCGCCGAGGTCGTATCAGAAGGTTCCCCCGA
CCGTATACAGTCGGCGGAAGCCTCGCTACAAAAAAGGAGTAA
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