mRNA_S-ischiensis_contig97.21126.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig97.21126.1 vs. uniprot
Match: A0A7S3LEY4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEY4_9STRA) HSP 1 Score: 107 bits (267), Expect = 3.290e-20 Identity = 83/255 (32.55%), Postives = 131/255 (51.37%), Query Frame = 1
Query: 1663 AQVMISTHVFHEVRNVLSSILAVSDL---------LQEKHPDAETEDMLVQQREVVEYACSVLNNVLDITRMSSNT*VRQRSTFDVGSVFTYVERLQGPKAARGVTVELVVPSTVPLIVYHDRILLTQLLVNLVANATAVTREGSITIYACNLP-LRA-SSRNDDDSRVSGRGGASVSSVTDVRHGNESGAESQRRIEIGVMDTGPGLSRKTFEACCMAVLGGP-APSMSQMPSGTSYSLHLVSVIAQVLGSKLR 2391
AQ +IS VFHEVRN LSS++A+S++ L ++ DA +DML Q EVV YA LNNVLD++++ S++ Q+ FDV + + +Q KA + P + IV D + +++VNL++NA T+ G I + + ++A +++ + D +V G +V R++ +GV DTGPGL + EA VL G S S + + LHL ++A LG+KL+
Sbjct: 242 AQALISAQVFHEVRNALSSVVAMSEMASSVKDDETLPQETKDASIDDMLDQSTEVVNYALQTLNNVLDLSKIKSSSMKVQKKEFDVQDMVSRCTMMQKSKAVKANMSFKRGPRSY--IVNSDSDITMRIMVNLISNAVKFTKSGGIQPFVWTIEEMQARTTQAEKDGQVMGDANGNV-----------------RQVAVGVADTGPGLDPRHLEASEKGVLSGTNTGGYSHGASNSGFGLHLCQLLAHSLGTKLQ 477
BLAST of mRNA_S-ischiensis_contig97.21126.1 vs. uniprot
Match: A0A835Z632_9STRA (Histidine kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z632_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.050e-19 Identity = 89/286 (31.12%), Postives = 136/286 (47.55%), Query Frame = 1
Query: 1663 AQVMISTHVFHEVRNVLSSILAVSDLLQEKHPDAETEDMLVQQREVVEYACSVLNNVLDITRMSSNT*VRQRSTFDVGSVFTYVERLQGPKAARGVTVELVVPSTVPLIVYHDRILLTQLLVNLVANATAVTREGSITIYACNLPLRASSRNDDDSRVSGRGGASVSSVTDVRHGNESGAESQRRIEIGVMDTGPGLSRKTFEACCMAVLGGPAPSMSQMPSGTSYSLHLVSVIAQVLGSKLRRQSPVPADHPIRRLQRTPPTPGEGPGTAIFIHLKAPVRAPEGE 2520
AQ +S HVFHE+RNVLSS+LA++D + + D +DM ++QR + +YA ++ +LD+T +RS + +F LQG + ARGV + V P I H +LTQLLVNL++N++ VT+ G I + A +V+ G +IE+GV DTGPG+ + L PA Y L+LV++IA+ + + L +PVP+DH R+ T GPG + + + R+ E E
Sbjct: 514 AQEAMSNHVFHEMRNVLSSMLAIADTMAD---DPSMQDMALRQRSMCQYAVETMDTMLDVTLYQGGMYKVRRSAMKLTDLFDKAMMLQGDRVARGVALSRVAPEFAYDIDAH---VLTQLLVNLLSNSSKVTKTGHIRVVA----------------------------REVQPG---------QIELGVSDTGPGM------VGAVNALAFPADPDEYKRRSCGYGLYLVNLIAKSMEADLSVLTPVPSDHWTRQ------TTDGGPGAYVSLKFEC-ARSAESE 743
BLAST of mRNA_S-ischiensis_contig97.21126.1 vs. uniprot
Match: A0A1E7FFU7_9STRA (Histidine kinase domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFU7_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 7.280e-18 Identity = 72/253 (28.46%), Postives = 123/253 (48.62%), Query Frame = 1
Query: 1663 AQVMISTHVFHEVRNVLSSILAVSDLLQEKHPD---------AETEDMLVQQREVVEYACSVLNNVLDITRMSSNT*VRQRSTFDVGSVFTYVERLQGPKA-ARGVTVELVVPSTVPLIVYHDRILLTQLLVNLVANATAVTREGSITIYACNLPLRASSRNDDDSRVSGRGGASVSSVTDVRHGN--ESGAESQRRIEIGVMDTGPGLSRKTFEACCMAVLGGPAPSMSQMPSGTSYSLHLVSVIAQVLGSK 2385
AQ +IS VFHEVRN LSS++A+S++ D + +ML Q +EVV Y+ ++LNN+LD++++ S + + FD+ + +Q KA RGV + P P I Y D ++ +++ N ++NA T G++ + C L S + +++ +S D +H N +SG + + +GV DTGPGL R+ + ++ + + LHL +A GS+
Sbjct: 415 AQALISAQVFHEVRNALSSVVAMSEMTASLQNDPTVTSETLASSVSEMLEQNKEVVNYSLNMLNNILDVSKIKSGSFETKDDFFDLQDLVNRATTMQLVKAQTRGVKMSFT-PMLEPQIAYCDEDIVVRIITNFISNAVKFTTAGAVQPFVCLLESIDPSAQNKSTQLDDMKSREKTSGND-QHANLLKSG---MKLVAVGVADTGPGLGRELLNIAEAGLFSSDGTELNSGAKNSGFGLHLAHQLASTFGSQ 662
BLAST of mRNA_S-ischiensis_contig97.21126.1 vs. uniprot
Match: A0A835YZ43_9STRA (Histidine kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ43_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.480e-17 Identity = 83/278 (29.86%), Postives = 131/278 (47.12%), Query Frame = 1
Query: 1663 AQVMISTHVFHEVRNVLSSILAVSDLLQEKHPDAETEDMLVQQREVVEYACSVLNNVLDITRMSSNT*VRQRSTFDVGSVFTYVERLQGPKAARGVTVELVVPSTVPLIVYH-DRILLTQLLVNLVANATAVTREGSITIYACNLPLRASSRNDDDSRVSGRGGASVSSVTDVRHGNESGAESQRRIEIGVMDTGPGLSRKTFEACCMAVLGGPAPSMSQMPSGTSYSLHLVSVIAQVLGSKLRRQSPVPADHPIRRLQRTPPTPGEGPGTAIFIHLK 2493
AQ +S HVFHE+RNVLSS+LA++D + + D +DM ++QR + +YA ++ +LD+T ++S + +F LQG + A GV + + P + Y D +LTQLLVNL++N++ VT+ G I + A + V+G+ IE+GV DTGPG+ + L PA Y L+LV +IA+ + + L +PVPA+H R+ T GPG + + +
Sbjct: 514 AQEAMSNHVFHEMRNVLSSMLAIADNMAD---DPAMQDMALRQRSMCQYAVETMDTMLDVTLYQGGMYKLRKSGMKLTDLFDNAMMLQGDRVAHGVALSRIAPE----VKYDLDSHVLTQLLVNLLSNSSKVTKIGQIRVVAREV-------------VNGK------------------------IELGVSDTGPGM------VGAVNALAFPADPDEYKRRSCGYGLYLVHLIAKSMEADLAVLTPVPAEHWTRQ------TSEGGPGAYVSLRFE 735
BLAST of mRNA_S-ischiensis_contig97.21126.1 vs. uniprot
Match: A0A835YYH2_9STRA (Histidine kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYH2_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 7.860e-16 Identity = 76/252 (30.16%), Postives = 119/252 (47.22%), Query Frame = 1
Query: 1663 AQVMISTHVFHEVRNVLSSILAVSDLLQEKHPDAETEDMLVQQREVVEYACSVLNNVLDITRMSSNT*VRQRSTFDVGSVFTYVERLQGPKAARGVTVELVVPSTVPLIVYHDRILLTQLLVNLVANATAVTREGSITIYACNLPLRASSRNDDDSRVSGRGGASVSSVTDVRHGNESGAESQRRIEIGVMDTGPGLSRKTFEACCMAVLGGPAPSMSQMPSGTSYSLHLVSVIAQVLGSKLRRQSPVPADH 2418
AQ +S HVFHE+RNVLSS+LA++D + + D E DM ++QR + +YA ++ +LD+T +++ + + LQG + A GVT+ P + + H +LTQLLVNL++N++ V + G I + A ++R +E+GV DTGPG+ TF PA Y L+LV +IA+ +G+ L +PVPA+H
Sbjct: 158 AQEAMSNHVFHEMRNVLSSMLAIADTMAD---DPELRDMALRQRSMCQYAVETMDTMLDVTLYQGGMYKVRKAPMKLTDLLDSAIMLQGDRVAHGVTLSRSAPDSEFDVDAH---VLTQLLVNLLSNSSKVVKSGQIRLVA------------REARPC-------------------------HMELGVSDTGPGMV--TF----------PADPDEYKRRSCGYGLYLVHLIAKSMGADLTVLTPVPAEH 354
BLAST of mRNA_S-ischiensis_contig97.21126.1 vs. uniprot
Match: A0A836CM10_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM10_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 3.760e-14 Identity = 52/141 (36.88%), Postives = 83/141 (58.87%), Query Frame = 1
Query: 1663 AQVMISTHVFHEVRNVLSSILAVSDLLQEKHPDAETEDMLVQQREVVEYACSVLNNVLDITRMSSNT*VRQRSTFDVGSVFTYVERLQGPKAARGVTVELVVPSTVPLIVYHDRILLTQLLVNLVANATAVTREGSITIYA 2085
AQ +S H+FHE+RNVLSS+LA+SD + + D DM ++QR + +YA ++ +LD+T ++S+ + +F LQG + A GV + V P +V + H +LTQLLVNL++N++ T+ G I + A
Sbjct: 75 AQEAMSNHMFHEMRNVLSSMLAISDTMAD---DPSLRDMALRQRSMCQYAVETMDTMLDVTLYQGGMYKVRKSSKKLTDLFDSAIMLQGDRVAHGVALTRVAPDSVYDVDTH---VLTQLLVNLLSNSSKATKSGQIRLVA 209
BLAST of mRNA_S-ischiensis_contig97.21126.1 vs. uniprot
Match: A0A7S2PW60_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PW60_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.480e-13 Identity = 78/277 (28.16%), Postives = 114/277 (41.16%), Query Frame = 1
Query: 1603 TDVQDRRRTEDLQRL-EGEKHAQVMISTHVFHEVRNVLSSILAVSDLLQE---------------KHPDAETEDMLVQQREVVEYACSVLNNVLDITRMSSNT*VRQRSTFDVGSVFTYVERLQGPKAARGVTVELVVPSTVPLIVYHDRILLTQLLVNLVANATAVTREGSITIYACNLPLRASSRNDDDSRVSGRGGASVSSVTDVRHGNESGAESQRRIEIGVMDTGPGLSRKTFEACCMAVLGGPAPSMSQMPSGTSYS---LHLVSVIAQVL 2376
TD + +R E QR E AQ IS HV+HE+RNV+ S+LA++D E K A +++ QR V ++A LN++LD+ +M + T + D+G + LQ P+ V +EL VPS L V D +LL Q L NL++NA T G + + V VR + E + +GV D+GPG+ A G A GT + L L +IA +
Sbjct: 13 TDARAKRDAEMKQRAAEAATAAQATISAHVYHEIRNVVGSVLALADRAMEAVDLALIEDDDELGLKELPARVQELTDHQRLVCQHAVDTLNDMLDVAKMENGTYTPKHEVIDLGDLCRKASALQSPRMRASVNLELNVPSPDSLYVISDSVLLLQYLSNLLSNAAKFTASGGVIL-----------------------------VCSVREAGPNWLE----VTLGVSDSGPGIPPDAQRHVLRAFTTGDALPQEDRIGGTKSTGIGLRLADLIAHTI 256
BLAST of mRNA_S-ischiensis_contig97.21126.1 vs. uniprot
Match: A0A7R9W4T6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W4T6_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.520e-12 Identity = 78/277 (28.16%), Postives = 115/277 (41.52%), Query Frame = 1
Query: 1603 TDVQDRRRTEDLQRL-EGEKHAQVMISTHVFHEVRNVLSSILAVSDLLQEKHPDAETED---------------MLVQQREVVEYACSVLNNVLDITRMSSNT*VRQRSTFDVGSVFTYVERLQGPKAARGVTVELVVPSTVPLIVYHDRILLTQLLVNLVANATAVTREGSITIYACNLPLRASSRNDDDSRVSGRGGASVSSVTDVRHGNESGAESQRRIEIGVMDTGPGLSRKTFEACCMAVLGGPAPSMSQMPSGTSYS---LHLVSVIAQVL 2376
TD + +R E QR E AQ IS HV+HE+RNV+ S+LA++D E A ED + QR V ++A LN++LD+ +M + T + D+G + LQ P+ V +EL VP T L V D +LL Q L NL++NA T +G + + VR + E + +GV D+GPG+ ++ A G A GT + L L +IA +
Sbjct: 410 TDARAKRDAEMKQRAAEAATAAQATISAHVYHEIRNVVGSVLALADRATEAVDLALIEDDSELGLKELPKRVRELTDHQRLVCQHAVDTLNDMLDVAKMENGTYTPKHEVIDLGELCRKAAALQSPRMRPRVKLELNVPDTDKLYVISDSVLLLQYLSNLLSNAAKFTAKGGVVLVCL-----------------------------VREAGPNWLE----VTLGVADSGPGIRQEAQRHVLRAFTTGDALPQEDRVGGTKSTGIGLRLADLIAHTI 653
BLAST of mRNA_S-ischiensis_contig97.21126.1 vs. uniprot
Match: K0R351_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R351_THAOC) HSP 1 Score: 77.4 bits (189), Expect = 1.040e-10 Identity = 76/277 (27.44%), Postives = 116/277 (41.88%), Query Frame = 1
Query: 1603 TDVQDRRRTEDLQR-LEGEKHAQVMISTHVFHEVRNVLSSILAVSD---------LLQE------KHPDAETEDMLVQQREVVEYACSVLNNVLDITRMSSNT*VRQRSTFDVGSVFTYVERLQGPKAARGVTVELVVPSTVPLIVYHDRILLTQLLVNLVANATAVTREGSITIYACNLPLRASSRNDDDSRVSGRGGASVSSVTDVRHGNESGAESQRRIEIGVMDTGPGLSRKTFEACCMAVLGGPAPSMSQMPSGTSYS---LHLVSVIAQVL 2376
TD + +R E QR E AQ IS HV+HE+RNV+ S+LA++D L++E + ++ QR V ++A LN++LD+ +M + T + D+ + LQ P+ V +EL VP+ V D +LL Q L NL++NA T EG + + CN VR + E + +GV D+GPG++ A G A GT + L L +IA +
Sbjct: 922 TDARAKRDAEMKQREAEAATAAQATISAHVYHEIRNVVGSVLALADRATEAVDLALIEEDDEFGLRDLPTRVRELTDHQRLVCQHAVDTLNDMLDVAKMENGTYTPKHEVIDLSELCRKAAALQSPRMRPRVHLELNVPTPGSSHVISDSVLLLQYLSNLLSNAAKFTAEGGV-VLVCN----------------------------VREAGPNWLE----VTLGVADSGPGIAGDAQHHVLRAFTTGDALPQEDKVGGTKSTGIGLRLADLIAHTI 1165
BLAST of mRNA_S-ischiensis_contig97.21126.1 vs. uniprot
Match: K0TBS7_THAOC (Histidine kinase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBS7_THAOC) HSP 1 Score: 76.6 bits (187), Expect = 1.620e-10 Identity = 63/275 (22.91%), Postives = 133/275 (48.36%), Query Frame = 1
Query: 1597 LQTDVQDRRRTEDLQRLEGEKHAQVMISTHVFHEVRNVLSSILAVSDLLQEKHPDAET---------EDMLVQQREVVEYACSVLNNVLDITRMSSNT*VRQRSTFDVGSVFTYVERLQGPKA-ARGVTVELVVPSTV-PLIVYHDRILLTQLLVNLVANATAVTREGSITIYACNLPLRASSRNDDDSRVSGRGGASVSSVTDVRHGNESGAESQRRIEIGVMDTGPGLSRKTFEACCMAVLGGPAPSMSQMPSGTSYSLHLVSVIAQVLGSKL 2388
+Q+ ++ +R E++++ +K AQ ++S V+HE+RN LSS++A+ ++ + D T +DM+ Q EVV Y+ ++LNN+LDI ++ + + + F++ + +Q KA +GV + S+V P+ D+ ++ +++ N ++N+ T+ G + + + A + + + S+ D + +GV DTG GLS + E + + + ++ + + LHL + + LG++L
Sbjct: 524 MQSTWEEHKRLEEMEKASFDK-AQALVSAQVYHEIRNALSSVIAMGEMTKALRQDPSTSSKGLISSVDDMMDQTSEVVRYSLTMLNNILDINKIKTGSFNINPTRFNLTELVQRATTMQVVKAQTKGVKMTFNTTSSVHPVYTSTDKDIVLRIITNFISNSVKFTKSGCVQPFVIPVEEMAIAMPE------------LKSLGDY-------------VCVGVADTGIGLSAEQLEKAKLGLYNSES-TVENNAKNSGFGLHLAHQLTEALGTRL 771 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig97.21126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig97.21126.1 >prot_S-ischiensis_contig97.21126.1 ID=prot_S-ischiensis_contig97.21126.1|Name=mRNA_S-ischiensis_contig97.21126.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=590bp MADFAMTETFIQTEYERESRRLVGMQRKAADGRASVDQQFAEVDNNFAEGback to top mRNA from alignment at S-ischiensis_contig97:115259..153130- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig97.21126.1 ID=mRNA_S-ischiensis_contig97.21126.1|Name=mRNA_S-ischiensis_contig97.21126.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=37872bp|location=Sequence derived from alignment at S-ischiensis_contig97:115259..153130- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig97:115259..153130- >mRNA_S-ischiensis_contig97.21126.1 ID=mRNA_S-ischiensis_contig97.21126.1|Name=mRNA_S-ischiensis_contig97.21126.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3540bp|location=Sequence derived from alignment at S-ischiensis_contig97:115259..153130- (Schizocladia ischiensis KU_0333)back to top |