mRNA_S-ischiensis_contig95.21080.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig95.21080.1
Unique NamemRNA_S-ischiensis_contig95.21080.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig95.21080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig95contigS-ischiensis_contig95:377078..380948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1701
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig95.21080.1prot_S-ischiensis_contig95.21080.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig95 378314..380933 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817430.160072-UTR-S-ischiensis_contig95:377077..3783131622817430.160072-UTR-S-ischiensis_contig95:377077..378313Schizocladia ischiensis KU_0333UTRS-ischiensis_contig95 377078..378313 -
1695741109.6593008-UTR-S-ischiensis_contig95:377077..3783131695741109.6593008-UTR-S-ischiensis_contig95:377077..378313Schizocladia ischiensis KU_0333UTRS-ischiensis_contig95 377078..378313 -
1622817430.2253916-UTR-S-ischiensis_contig95:380933..3809481622817430.2253916-UTR-S-ischiensis_contig95:380933..380948Schizocladia ischiensis KU_0333UTRS-ischiensis_contig95 380934..380948 -
1695741109.7231245-UTR-S-ischiensis_contig95:380933..3809481695741109.7231245-UTR-S-ischiensis_contig95:380933..380948Schizocladia ischiensis KU_0333UTRS-ischiensis_contig95 380934..380948 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817430.1753244-CDS-S-ischiensis_contig95:378313..3785051622817430.1753244-CDS-S-ischiensis_contig95:378313..378505Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 378314..378505 -
1695741109.669755-CDS-S-ischiensis_contig95:378313..3785051695741109.669755-CDS-S-ischiensis_contig95:378313..378505Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 378314..378505 -
1622817430.1889381-CDS-S-ischiensis_contig95:378674..3787791622817430.1889381-CDS-S-ischiensis_contig95:378674..378779Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 378675..378779 -
1695741109.6831684-CDS-S-ischiensis_contig95:378674..3787791695741109.6831684-CDS-S-ischiensis_contig95:378674..378779Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 378675..378779 -
1622817430.2006483-CDS-S-ischiensis_contig95:379885..3799541622817430.2006483-CDS-S-ischiensis_contig95:379885..379954Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 379886..379954 -
1695741109.6949275-CDS-S-ischiensis_contig95:379885..3799541695741109.6949275-CDS-S-ischiensis_contig95:379885..379954Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 379886..379954 -
1622817430.21219-CDS-S-ischiensis_contig95:380849..3809331622817430.21219-CDS-S-ischiensis_contig95:380849..380933Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 380850..380933 -
1695741109.7103112-CDS-S-ischiensis_contig95:380849..3809331695741109.7103112-CDS-S-ischiensis_contig95:380849..380933Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 380850..380933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig95.21080.1

>prot_S-ischiensis_contig95.21080.1 ID=prot_S-ischiensis_contig95.21080.1|Name=mRNA_S-ischiensis_contig95.21080.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=150bp
MAEEELLEMLFALLEAGPPGALMEGQLQLLVGELHNSTPGILAPLNGILA
EVNFQERRETLQVDLPYFKRLHRKYPKLFYPAFVLQERLMKRTLGLKRWR
RLRLTHHNNVLRAEAQLRGEPGPEGSAALGGVAGPGGLGHRRAWLFLLC*
back to top

mRNA from alignment at S-ischiensis_contig95:377078..380948-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig95.21080.1 ID=mRNA_S-ischiensis_contig95.21080.1|Name=mRNA_S-ischiensis_contig95.21080.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3871bp|location=Sequence derived from alignment at S-ischiensis_contig95:377078..380948- (Schizocladia ischiensis KU_0333)
GTGCGGTTCTGCCTAATGGCGGAGGAGGAGCTGCTGGAGATGCTCTTTGC
CCTGCTGGAAGCCGGCCCCCCGGGGGCGCTCATGGAAGGGCAGCTCCAGG
CACGTGGTTTGCGATGGTGGCGGTGGTGGGGTTGGTGATGGAGGTGGCGG
GGGTGGTGGTGGTGGTTGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTG
GTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTCGTGTTGGTGGTGGTGGT
GGTGGTTGTGGTGGTGGTTGTCGTGGTAGTGTACTAGCAGTGGTGGTGGC
AGCAGCGGCGTTTGTGGTGGTGGTGGTGGTGGTGGCGCTGCTTGCACTAT
TGTGCCTCGAGTTGAGTGCAGAATGTCGGTCCTCAGAATTTCGTCGGGAA
GGTGCAGTACGCTGCCGTGCGTATACAGCACTCTAGTATAGCAGTACTCG
TTCCGCACTGTCCTGTCCTGCACTGCAAATTTGCTGTGGTACTGTGCGGT
ACTGCGCCAGAGTAGTACGCCGTGGCAGTGCTACAGTACAGTACAGTATT
AACAGGAACGATACAGGATGAGGTGCAGGCCACATCACTATAGGCCTCGG
CAGTGGCCCTGCCTTGTAGCTTGCCAGGGGAGGGTTTGTGTGTACAGTAC
AGTAGTACAACTGTACTCCGTAAAATGCACGACCCAACGAGGCGACTGCC
TTTACAGCACTGCCCACATCAAGGCACAGACTGGAGCGGAACGTCAGAAA
ATGGCATAGCATATCTCCCCCTAGTTGCTCACCGCAAAGGGCCTCGCGTC
TATCCCCCTGGTTCCTCTCTGTGGCCCTCCCTGACGTCTCCCGCTGCCCG
CGCCGCTCATCCCCCGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGCATGTCTGTGTCTATTGCCCACGCGGACACGTCCAT
TTGCTTGTGCTTGCGTGCGTGCGTGCGTGCGTTCCACGTGGCAGCTGCTG
GTGGGTGAGCTTCACAACTCCACCCCAGGAATCCTCGCCCCTCTCAACGG
CATCCTCGCGGAGGTGAGCTCGCAAGTCGTGGTTTATAATCCCGTCGGAC
ATTTCAGGCCCACCTGTGTGCTGTGTACTTCAAAATACCAGCTTTGCCCA
CGGCACCTGGGGATAGTAGATTCCCCCGGGGGCCGGCCTACGGCCTCCTC
CTGCCGCTGGTGCTTAGCCAGTGTCCCACCCAACAGAGTTAGCAGTGGCA
GTCAAGGGCCAGTTACACCCGACAGTTGCTGCGTTGGTTACCCACGGAAA
GCCTGAAGGTGGCCAGACTCCCCTATGGTGGGGGGAACCGGCGCTCCCCT
GGCATTTACGTTACAGTTTCAGAACAGGTTTGGGACACTTGTCGGGGGGG
CTGACGGTACCCGGACTCCCAAGTGGCGGAGAAAACGGCGCTCCGCTGCC
ATTTACAGTACGTGGCAGTTACGGAGAAGGTGGTGGTGGCCCGTCCCCCT
AATGGCGGAGGACGGGTTCCGCTGGCAGTTGCATTACAGTTACAATACGG
TTGCAGGGCAGCTACAGCCAGTTACGGAGAGCTGACGGCAACCAGACTCC
CCCGTGGCAAGGGACAGCGCCCCACTCATGGCAGGGGGCGGCGCTCCGCT
AGCAGTTGCATGACAGGTGCATGACAATTGACGGTGGAGGAAGCGGGGCT
CTGCACGCAGTCCAGTGGCAGCCGGACGGCAGCTACATTGCAGCATACCT
TGTAGAGGCTCGCCGCGCATGGTGTCCTTAAACAGCAGAGCAGCGTCCTA
TTCCGTGGCGCGCCTGACACCTCCGTGGGACATATGGTCCATGGCCGTAT
ATGGGTGGGTAGGGCAGGCAACTCAAGACAGCCCCACCCCCCGCAACAAG
AGACAGACTGAGCGAGAAATGGGGCGGCGAGCCCCTTCACTACAGTAGCA
AGCATGGCTTGCAGGTCGCCCGTGCATGACACAACCCCATGCAGTAACGT
ATCGCCCCCTGCCCCCCGCGCGCGCCCGCTCCTACCGGCGAGCCATACTT
TCTTGCAACTACACTCCTTGACCGACACACCAGTTGCTCGCGCACGGTGC
TGTGTTGGCGATGCGCACCCATCCGCCGTGTCTATCTGTCCGCCCGTCCC
GCCCGCCCCCTGGGAGCAGGTGAACTTTCAGGAGCGGAGGGAGACCCTGC
AGGTGGACCTGCCCTACTTCAAACGCCTGCACAGGAAGTACCCCAAGCTC
TTCTACCCGGCGTTTGTGCTCCAGGTGTGTGGCACAGTGTATGCGTACGC
GTGTGGGAATATGGGCCGGGTAATACACCGGCGATTTGAAACACACAGCA
ACTGTACTGATTGACATTTTTGTTCTTGTGTGACCCCGTGCCCCACCTCC
ACCACCCCGCCCCGCCCCACGCCGGCCCTCCCCCGCGGGCCAGGAGCGCC
TCATGAAGCGCACACTGGGGTTGAAACGCTGGCGGCGCCTGCGCCTGACG
CACCACAACAACGTGCTCAGGGCCGAGGCGCAGCTGCGTGGGGAACCCGG
GCCTGAGGGCAGCGCCGCCCTGGGAGGAGTCGCGGGGCCTGGGGGACTCG
GGCACCGGCGAGCGTGGCTCTTCCTTTTGTGCTGACTGGGCTCGGACTCG
GCCGAGTCGGATTGTTCCCGCCCTGGCACTGGCGTGTGTTTTTAAAGTAT
TTTGATGGCATGCGAGATACTGGCGCGTGTTCATTGGCCGGGATCCTACA
GTGGCGGCAGCTGCTGCAGCGGCCAGAAACGGGCCTGCTTGGGCGTACTT
TGAAGAAATTTTGTGCGGGTGGATGACTGAAGTGGCCTGACAAATCTGGT
TCAAGGCGCGATATGCCTTACAAAGCGGACAGCGCTTAGATAGAGGAGAG
CACTGATGGGTTTGGTGTGCTGTGCGGAGCAGCGCCCAGGCTGGGCGGGC
CCGGCTTGGACGTTATTCTCAGCGAGTCGGGGTTGAACGTTGAACTTGAC
TTTTTAGCGCTTGCACATGTGCGGTCGACGTGTTCAAGTATCAAATACTT
CGTATTGTATTTTTTTGTTGAGGTGGATAGGGCAGAACTTGAAGGCAAGT
CGAGTACGGGCTTTTCATTACGCTTCGCACCGCGGTTGAGATATATAGCT
ACTTGCCATGATCACCGTATGCACAGTAGTACTTACGAGGTGTGTGCACC
CTCCCGAGTTTAGCACACCTCGGGTATACTCCGAAGTGCTTCGAAGTACT
TCCGGAAGTACTCGAGTATACTTACTTGGAAGTGTATACAGTGCAGCGGT
ATACGGGAGGTTTGGCTTGGTGTGCCGCACCGGTGCGGCGGGCGACATTC
TCCCAGTCGCGGCGGCGAGCCTGACAGAGGTTGATATATATTTGTTTCTT
CCAAGTACTTCAAAGTATGTTTTTACGGGCACCCTGCAGTGCCACGTGTC
CCGTGCTTTGGGAGAGCTCTGAAGTAGATAGAGCTACTGTAGCTCGCTGT
TGCTTGGAGCAACACGGCCTGGGGCCAAGCACTGTGCCACGTCTCCCGTG
CTTTGGTAGAGCGCTGAAGTACAGTAAATAGAGCTAGCTCGCTGTTGCTT
GGAGCAACACGGCCCGGGGCCAAGCACAAATGCTTTAATGTAGCTGAAGC
TTGAAGTGAATCGCGCACTTCCGAGTCGTGCTGAGGCTTCCTTACTTGGA
GTAAGCAGGCTGCAGTTCAAGTATTGGTACAGTACAGTACTGTAGTGCTT
TTTTACTCGGAAGTACGTTTGGTGTGCCAAAGCACCGGTAGCCGCGGTGA
CTCGCCTATCGAAGAGCTTCGAGACTGGCCGGCGCGTTAGCTTGTAAACG
CCGGTGAAACAAACTTTGAAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig95:377078..380948-

>mRNA_S-ischiensis_contig95.21080.1 ID=mRNA_S-ischiensis_contig95.21080.1|Name=mRNA_S-ischiensis_contig95.21080.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=900bp|location=Sequence derived from alignment at S-ischiensis_contig95:377078..380948- (Schizocladia ischiensis KU_0333)
ATGGCGGAGGAGGAGCTGCTGGAGATGCTCTTTGCCCTGCTGGAAGCCGG
CCCCCCGGGGGCGCTCATGGAAGGGCAGCTCCAGATGGCGGAGGAGGAGC
TGCTGGAGATGCTCTTTGCCCTGCTGGAAGCCGGCCCCCCGGGGGCGCTC
ATGGAAGGGCAGCTCCAGCTGCTGGTGGGTGAGCTTCACAACTCCACCCC
AGGAATCCTCGCCCCTCTCAACGGCATCCTCGCGGAGCTGCTGGTGGGTG
AGCTTCACAACTCCACCCCAGGAATCCTCGCCCCTCTCAACGGCATCCTC
GCGGAGGTGAACTTTCAGGAGCGGAGGGAGACCCTGCAGGTGGACCTGCC
CTACTTCAAACGCCTGCACAGGAAGTACCCCAAGCTCTTCTACCCGGCGT
TTGTGCTCCAGGTGAACTTTCAGGAGCGGAGGGAGACCCTGCAGGTGGAC
CTGCCCTACTTCAAACGCCTGCACAGGAAGTACCCCAAGCTCTTCTACCC
GGCGTTTGTGCTCCAGGAGCGCCTCATGAAGCGCACACTGGGGTTGAAAC
GCTGGCGGCGCCTGCGCCTGACGCACCACAACAACGTGCTCAGGGCCGAG
GCGCAGCTGCGTGGGGAACCCGGGCCTGAGGGCAGCGCCGCCCTGGGAGG
AGTCGCGGGGCCTGGGGGACTCGGGCACCGGCGAGCGTGGCTCTTCCTTT
TGTGCTGAGAGCGCCTCATGAAGCGCACACTGGGGTTGAAACGCTGGCGG
CGCCTGCGCCTGACGCACCACAACAACGTGCTCAGGGCCGAGGCGCAGCT
GCGTGGGGAACCCGGGCCTGAGGGCAGCGCCGCCCTGGGAGGAGTCGCGG
GGCCTGGGGGACTCGGGCACCGGCGAGCGTGGCTCTTCCTTTTGTGCTGA
back to top