mRNA_S-ischiensis_contig95.21073.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig95.21073.1
Unique NamemRNA_S-ischiensis_contig95.21073.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig95.21073.1 vs. uniprot
Match: A0A6M0CK90_9FLAO (Response regulator n=1 Tax=Spongiivirga citrea TaxID=1481457 RepID=A0A6M0CK90_9FLAO)

HSP 1 Score: 159 bits (403), Expect = 4.510e-40
Identity = 100/264 (37.88%), Postives = 154/264 (58.33%), Query Frame = 3 
Query:  255 PTTIDRR*LNVTQVIVNLVSNAVKYTGAGGHISISATRDEASGM---MEIRVKDSGVGISAEDQEHVFERFFRCENASRLADGTGLGLAIVSHIVTVMGGTIGVESEVGVGSTFVAQLPARLEMDGGHAEEGDSAAKEEKTAS--DGVARYQILVAEDSPPNQRLLRRILENQGHV-VDTVADGQAALDALASSHYDLLMLDLGLPKKTGQEVLQEVRSAPASCVYTDIPIIVISGHALDDHRQMCKELGSNAFTAKPFRSETI 1028
            P TI      + Q+++NL+ NA K+T  G  +++  + +   G    +   V D+G+GI+ E+ E +FE F +  N + L  GTGLGL+I  HIV  +GG I V+SE+G G+TF   L   LE+       GD + K+E++A       +YQIL+ EDS  NQ LL ++L +QG+  VD   +GQ ALD ++++ YDL++LD+ +PK  G EV +++R A        +PII ++ +A  D R+ CK+ G N F A PF S  +
Sbjct:  241 PETIIGDRTRLQQILINLLGNAFKFTSEGS-VTLRISENSRRGKKVNLNFNVTDTGIGIAEENLEAIFESFTQVHN-NPLYGGTGLGLSITKHIVDFLGGKISVKSELGNGTTFSLNLNYELELG-----RGDKSKKKEESAVFFKPDKKYQILMVEDSESNQMLLMKLLVSQGNFFVDLATNGQEALDFISTTDYDLVILDIKIPKVNGLEVAKQLR-ASEDIFIRRLPIIALTAYATADDRKACKQAGINDFLAIPFESNDL 496
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BLAST of mRNA_S-ischiensis_contig95.21073.1 vs. uniprot
Match: A0A2K9NIZ9_9PROT (Histidine kinase n=1 Tax=Niveispirillum cyanobacteriorum TaxID=1612173 RepID=A0A2K9NIZ9_9PROT)

HSP 1 Score: 163 bits (412), Expect = 6.470e-40
Identity = 100/248 (40.32%), Postives = 147/248 (59.27%), Query Frame = 3 
Query:  285 VTQVIVNLVSNAVKYTGAGGHISISATR--DEASGMMEIRVKDSGVGISAEDQEHVFERFFRCE-NASRLADGTGLGLAIVSHIVTVMGGTIGVESEVGVGSTFVAQLPARLEMDGGHAEEGDSAAKEEKTASDGVARYQILVAEDSPPNQRLLRRILENQGHVVDTVADGQAALDALASSHYDLLMLDLGLPKKTGQEVLQEVRSAPASCVYTDIPIIVISGHALDDHRQMCKELGSNAFTAKPFRS 1019
            V QV++NL++NAVK+T AG H+++SAT    E +G + I V D+G+GI+ E Q  +FE F + + + +R   GTGLGLAI   ++T+MGG +G+ SE G GS F  ++P RL     +A    +    E  A        ILVAED P NQ L+R ILE  GH VD   DG AA+ A+  + YDL+++D+ +P   G E  + +R+ P+  V   IPII ++ +AL    + C++ G N   AKP  +
Sbjct:  578 VRQVVLNLLNNAVKFTQAG-HVTLSATTIAGEGNGSLRIAVADTGIGIAPERQPQLFEPFHQADASTARRYGGTGLGLAICKRLITLMGGRLGLSSEAGRGSLFWIEIPLRLTDPPSNAPALPTPGAGEDGAD--ARTMHILVAEDLPVNQLLVRAILERVGHRVDIAVDGAAAVAAVQRTTYDLVLMDVQMPGMDGLEATRAIRALPS--VAGRIPIIALTANALPSEVERCRKAGMNDHIAKPIEA 820
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BLAST of mRNA_S-ischiensis_contig95.21073.1 vs. uniprot
Match: A0A3S0KI54_9RHOO (Histidine kinase (Fragment) n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A3S0KI54_9RHOO)

HSP 1 Score: 152 bits (384), Expect = 7.850e-39
Identity = 82/249 (32.93%), Postives = 149/249 (59.84%), Query Frame = 3 
Query:  279 LNVTQVIVNLVSNAVKYTGAGGHISISATRDEASGMMEIRVKDSGVGISAEDQEHVFERFFRCENA-SRLADGTGLGLAIVSHIVTVMGGTIGVESEVGVGSTFVAQLPARLEMDGGHAEEGDSAAKEEKTASDGVARYQILVAEDSPPNQRLLRRILENQGHVVDTVADGQAALDALASSHYDLLMLDLGLPKKTGQEVLQEVRSAPASCVYTDIPIIVISGHALDDHRQMCKELGSNAFTAKPFRSE 1022
            + + QV++NL+SNAVK+T AG  +++   R +    +   V+D+G+GI+A  Q H+F+ F + + + +R   GTGLGL+I S ++ +MGG I V+S  G GSTF   LP R            +AA  ++ A+   AR  +L+ ED+P NQRL + +L+ +G+ V    +G  A+D + + H+D++++D+ +P   G E  + +R+   +  +T +PII ++ +A+   R+ C + G + + +KP +++
Sbjct:   67 VRIRQVLINLLSNAVKFTEAG-EVAVKVGRGDGQ-ELRFSVRDTGIGIAAAAQRHIFDAFSQEDTSITRKFGGTGLGLSICSRLIALMGGRIWVDSTPGQGSTFHFTLPCRTAATADTTVPASAAATPQEEATISGAR--VLLVEDNPINQRLAQALLQKRGYAVSLAENGADAVDMVGAGHFDVILMDMQMPVLDGLEATRRIRNQEQAAGHTRVPIIAMTANAMIGDRERCLDAGMDDYLSKPIKAQ 311
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BLAST of mRNA_S-ischiensis_contig95.21073.1 vs. uniprot
Match: G8QGA3_AZOOP (Histidine kinase n=4 Tax=Betaproteobacteria TaxID=28216 RepID=G8QGA3_AZOOP)

HSP 1 Score: 159 bits (402), Expect = 1.400e-38
Identity = 105/300 (35.00%), Postives = 175/300 (58.33%), Query Frame = 3 
Query:  291 QVIVNLVSNAVKYTGAGGHISISATRDEASGMMEIRVKDSGVGISAEDQEHVFERFFRCENA-SRLADGTGLGLAIVSHIVTVMGGTIGVESEVGVGSTFVAQLPARLEMDGGHAEEGDSAAKEEKTASDGVARYQILVAEDSPPNQRLLRRILENQGHVVDTVADGQAALDALASSHYDLLMLDLGLPKKTGQEVLQEVRSAPASCVYTD-IPIIVISGHALDDHRQMCKELGSNAFTAKPFRSETIRTTIASVMR-EHLAVAGDSSTHTATSASGREASAATCAPSSXXSGDCAEEVA 1181
            QV++NLV NA+K+T  G    ++   +   G++   V D+G+GI A+ Q+ +FE F + +++ +R   GTGLGL I + +V +MGG + VES+ G GSTF     ARLE   G AE G++ A   +     +   ++LVAED+P NQ+L+  +L+ +GH V    +GQ AL ALA+ H+DL+++D+ +P   G E  + +R+A A+      +PI+ ++ +A+   R++C E G + + +KP R +   + +A V+  E L  AG ++   A   +   A+ +  AP++    D AE VA
Sbjct:  654 QVLINLVGNAIKFTEEG---QVAVRVEARDGLLHFAVSDTGIGIPADKQQLIFEAFSQADSSVTRRFGGTGLGLTICTRLVRLMGGHMWVESDPGQGSTF--HFTARLEAVAGPAESGEADAGRGEVV---LPPLRLLVAEDNPVNQKLVLTLLQKRGHRVTLADNGQQALAALATDHFDLVLMDMQMPVMGGLEATRRIRAAEAARGDGQHLPIVAMTANAMAGDRELCLEAGMDGYVSKPLRRDEFFSAMADVLPPERLRQAGAAAAIPADGQAAVAAAPSESAPAALRRCDRAEAVA 945
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BLAST of mRNA_S-ischiensis_contig95.21073.1 vs. uniprot
Match: A0A7C6B2G9_9BACT (Response regulator n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7C6B2G9_9BACT)

HSP 1 Score: 150 bits (379), Expect = 1.490e-38
Identity = 93/247 (37.65%), Postives = 145/247 (58.70%), Query Frame = 3 
Query:  279 LNVTQVIVNLVSNAVKYTGAGG-HISIS-ATRDEASGMMEIRVKDSGVGISAEDQEHVFERFFRCE-NASRLADGTGLGLAIVSHIVTVMGGTIGVESEVGVGSTFVAQLPARLEMDGGHAEEGDSAAKEEKTASDGVARYQILVAEDSPPNQRLLRRILENQGHVVDTVADGQAALDALASSHYDLLMLDLGLPKKTGQEVLQEVRSAPASCVYTDIPIIVISGHALDDHRQMCKELGSNAFTAKP 1010
            + + QV+ NL+ NA+K+T  G   + +  A   E+  ++  RVKD+G+GI  E +E +F  F + + +A+R   GTGLGLAI + +V++MGG IGV+SE+G GSTF       L    G       A + E  A+ G AR ++LV ED+  N+R++ R+LE  GH V TV+ GQ AL  L  S YD++++D+ +P   G EV +++R    +   T  PII ++ +A+   R+ C   G N + +KP
Sbjct:   32 VRLRQVLTNLIGNAIKFTERGWVRVEVEPAELCESDCLLHFRVKDTGIGIRPEIRERLFAPFEQADTSAARKYGGTGLGLAICAELVSMMGGEIGVQSELGRGSTFWFTARFALAAPPG-------APQPEPEAAPGGARGRVLVVEDNEVNRRVIARMLEKAGHEVHTVSSGQEALQTLRESAYDVVLMDVQMPDMDGLEVTRQIRRLEEAVRRT--PIIALTANAMAGDRERCLAAGMNDYLSKP 269
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BLAST of mRNA_S-ischiensis_contig95.21073.1 vs. uniprot
Match: UPI001F05E6E0 (ATP-binding protein n=1 Tax=Azospira oryzae TaxID=146939 RepID=UPI001F05E6E0)

HSP 1 Score: 158 bits (399), Expect = 2.570e-38
Identity = 93/260 (35.77%), Postives = 156/260 (60.00%), Query Frame = 3 
Query:  291 QVIVNLVSNAVKYTGAGGHISISATRDEASGMMEIRVKDSGVGISAEDQEHVFERFFRCENA-SRLADGTGLGLAIVSHIVTVMGGTIGVESEVGVGSTFVAQLPARLEMDGGHAEEGDSAAKEEKTASDGVARYQILVAEDSPPNQRLLRRILENQGHVVDTVADGQAALDALASSHYDLLMLDLGLPKKTGQEVLQEVRSAPASCVYTD-IPIIVISGHALDDHRQMCKELGSNAFTAKPFRSETIRTTIASVMREHL 1064
            QV++NLV NA+K+T  G    ++   +   G++   V D+G+GI A+ Q+ +FE F + +++ +R   GTGLGL I + +V +MGG + VES+ G GSTF     ARLE   G AE G++ A   +     +   ++LVAED+P NQ+L+  +L+ +GH V    +GQ AL ALA+ H+DL+++D+ +P   G E  + +R+A A+      +PI+ ++ +A+   R++C E G + + +KP R +   + +A V+   L
Sbjct:  435 QVLINLVGNAIKFTEEG---QVAVRVEARDGLLHFVVSDTGIGIPADKQQLIFEAFSQADSSVTRRFGGTGLGLTICTRLVRLMGGHMWVESDPGQGSTF--HFTARLEAVAGPAESGEADAGRGEVV---LPPLRLLVAEDNPVNQKLVLTLLQKRGHRVTLADNGQQALAALATDHFDLVLMDMQMPVMGGLEATRRIRAAEAARGDGQHLPIVAMTANAMAGDRELCLEAGMDGYVSKPLRRDEFFSAMADVLPPEL 686
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BLAST of mRNA_S-ischiensis_contig95.21073.1 vs. uniprot
Match: W4LA90_9BACT (Uncharacterized protein n=2 Tax=Candidatus Entotheonella TaxID=93171 RepID=W4LA90_9BACT)

HSP 1 Score: 156 bits (395), Expect = 3.680e-38
Identity = 98/263 (37.26%), Postives = 155/263 (58.94%), Query Frame = 3 
Query:  291 QVIVNLVSNAVKYTGAGG---HISISATRDEASGMMEIRVKDSGVGISAEDQEHVFERFFRCENA-SRLADGTGLGLAIVSHIVTVMGGTIGVESEVGVGSTFVAQLPARLEMDGGHAEEG---DSAAKEEKTASDGVARYQILVAEDSPPNQRLLRRILENQGHVVDTVADGQAALDALASSHYDLLMLDLGLPKKTGQEVLQEVRSAPASCVYTDIPIIVISGHALDDHRQMCKELGSNAFTAKPFRSETIRTTIASVMRE 1058
            QV++NLV NA+K+T AG     + + + ++EA  ++ + V D+G+GI A+ Q+ +FE F + + + +RL  GTGLGLAI S +V +MGGTI VESE  VGSTF       L+    H E     +SAAK  +   +      +L+AED+  NQ L+ R+LE QGH V    DGQ AL+A++   +DL+++D+ +PK  G EV+  +R+         IPI+ ++ HA+   R  C   G++A+  KP ++  +   IA ++ +
Sbjct:  392 QVVINLVGNAIKFTEAGEVIVRLEVDSQQEEAV-LLHVSVSDTGIGIPADKQQIIFESFAQADGSMTRLYGGTGLGLAISSQLVEMMGGTIWVESEHEVGSTFHFIAKFGLQPRTVHREPAVGPESAAK--RMPCENRQPLHVLLAEDNRNNQLLVIRLLEKQGHTVVVAGDGQEALEAISREPFDLVLMDIQMPKLDGLEVMAIIRAEERE-TGAHIPIVAMTAHAMASDRGRCLAAGADAYVVKPVQTTELFDVIAGLVAD 650
[Close]
BLAST of mRNA_S-ischiensis_contig95.21073.1 vs. uniprot
Match: A0A7W9A230_9CAUL (Histidine kinase n=1 Tax=Brevundimonas halotolerans TaxID=69670 RepID=A0A7W9A230_9CAUL)

HSP 1 Score: 157 bits (396), Expect = 5.800e-38
Identity = 100/268 (37.31%), Postives = 157/268 (58.58%), Query Frame = 3 
Query:  291 QVIVNLVSNAVKYTGAGGHISISATRDEASGMMEIRVKDSGVGISAEDQEHVFERFFRCE-NASRLADGTGLGLAIVSHIVTVMGGTIGVESEVGVGSTFVAQLPARLEMDGGHAEEGDSAAKEEKTASDGVARYQILVAEDSPPNQRLLRRILENQGHVVDTVADGQAALDALASSHYDLLMLDLGLPKKTGQEVLQEVRSAPASCVYTDIPIIVISGHALDDHRQMCKELGSNAFTAKPFRSETIRTTIASVMR-----EHLAVAG 1076
            QV +NL+SNAVK+TG GG ++++AT ++  G + + V D+G+GIS E    +F RF + + + +R   GTGLGLAI   ++ +MGGTIGV+SE G+GSTF  ++P  +  D G    G  A    +TA DG  R  IL+A+D+P N+ L+  IL   G  +D V +G  A++A+ S  YDL+++D+ +P   G    +E+R+         +PII ++ +   +  + C E+G +A   KP +   +  TI+ V+      E LA AG
Sbjct:  541 QVTLNLLSNAVKFTGQGG-VTVAATYED--GRLRVAVSDTGIGISEEKAATLFRRFVQADASTTRTFGGTGLGLAISRRLIEMMGGTIGVDSEPGIGSTFWFEVPL-VPADPGQVAGGHDA----ETAVDGTLR--ILMADDAPANRELVSAILGGMGLSIDGVENGAEAVEAVRSGTYDLVLMDVHMPVMDGLTATREIRAMAGEA--GRVPIIALTANVQPEQVRTCHEVGMDAHVGKPIQVAELMATISRVLGASEACEDLAAAG 796
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BLAST of mRNA_S-ischiensis_contig95.21073.1 vs. uniprot
Match: A0A2N3EFK6_9PROT (Histidine kinase n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 TaxID=2013657 RepID=A0A2N3EFK6_9PROT)

HSP 1 Score: 156 bits (394), Expect = 1.310e-37
Identity = 91/263 (34.60%), Postives = 149/263 (56.65%), Query Frame = 3 
Query:  255 PTTIDRR*LNVTQVIVNLVSNAVKYTGAGG-HISISATRDEASGMMEI--RVKDSGVGISAEDQEHVFERFFRCENA-SRLADGTGLGLAIVSHIVTVMGGTIGVESEVGVGSTFVAQLPARLEMDGGHAEEGDSAAKEEKTAS-DGVARYQILVAEDSPPNQRLLRRILENQGHVVDTVADGQAALDALASSHYDLLMLDLGLPKKTGQEVLQEVRSAPASCVYTDIPIIVISGHALDDHRQMCKELGSNAFTAKPFRSETI 1028
            P +ID     + Q++ NL+ NA+K+T  G   +++ AT D  +  MEI   V+D+G+GI       +F RF + +++ SR   GTGLGLAI   + T+M G I VES  G GSTF  +LP ++ +D   A      ++E   AS D   + ++L+AED P NQ+L+  ++E  GH +    +G   +  L    +DL+++D+ +P   G +  + +RS      + DIPI+ ++ HA+D HR++  E G N F +KPF+ + +
Sbjct:  565 PESIDGDATRLRQILFNLIGNAIKFTPEGHIDVTVDATPDREADAMEILFTVRDTGIGIPEAMLPSLFTRFQQADSSISRTYGGTGLGLAIARELTTLMNGAISVESREGEGSTFRVRLPVQVVVDATAAPAQQPQSQESAAASADEPHQLRVLLAEDQPVNQKLMMAVMERLGHDLTIAENGVEVIRKLREGSFDLILMDIQMPLMDGIQTTKVIRSFDEP--WHDIPIVAVTAHAMDGHREVYMEAGMNGFVSKPFKIDLL 825
[Close]
BLAST of mRNA_S-ischiensis_contig95.21073.1 vs. uniprot
Match: A0A7V5YRS5_9BACT (Response regulator n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7V5YRS5_9BACT)

HSP 1 Score: 147 bits (372), Expect = 1.570e-37
Identity = 95/263 (36.12%), Postives = 145/263 (55.13%), Query Frame = 3 
Query:  291 QVIVNLVSNAVKYTGAGG---HISISATRDEASG--MMEIRVKDSGVGISAEDQEHVFERFFRCE-NASRLADGTGLGLAIVSHIVTVMGGTIGVESEVGVGSTFVAQLPARLEMDGGHAEEGDSAAKEEKTASDGVARYQILVAEDSPPNQRLLRRILENQGHVVDTVADGQAALDALASSHYDLLMLDLGLPKKTGQEVLQEVRS-----------APASCVYTD------IPIIVISGHALDDHRQMCKELGSNAFTAKP 1010
            QV++NL+ NA+KYT  G     +++ +   EAS   ++  RV+DSGVGI  E QE +F  F++ + ++SR   G GLGLAI   +V +MGG I VES+ G GSTF   +  R       AE  + A  +   +       +ILV ED+P NQ+L+RR+LE +GH V    +G+ AL AL    +DL+++D+ +P+  G +  QE+R+           AP    Y +      IPII ++ HA+   R+ C   G + + +KP
Sbjct:    8 QVLINLLGNAIKYTDEGYVKLEVTVESRPAEASEQLLLHFRVRDSGVGIPPEMQEAIFLPFYQVDGSSSRRHGGAGLGLAIAKRLVELMGGRIWVESQPGRGSTFHFTIRCRP------AEVSEVAPSKASISRPSAGPLKILVCEDNPVNQQLIRRLLEREGHHVRVCNNGKEALRALEEECFDLVLMDVQMPEMDGLQATQEIRALEQAIQAGELPAPKGSSYENLCERGRIPIIALTAHAMSGDRERCLAAGMDGYLSKP 264
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig95.21073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6M0CK90_9FLAO4.510e-4037.88Response regulator n=1 Tax=Spongiivirga citrea Tax... [more]
A0A2K9NIZ9_9PROT6.470e-4040.32Histidine kinase n=1 Tax=Niveispirillum cyanobacte... [more]
A0A3S0KI54_9RHOO7.850e-3932.93Histidine kinase (Fragment) n=1 Tax=Rhodocyclaceae... [more]
G8QGA3_AZOOP1.400e-3835.00Histidine kinase n=4 Tax=Betaproteobacteria TaxID=... [more]
A0A7C6B2G9_9BACT1.490e-3837.65Response regulator n=1 Tax=Bryobacteraceae bacteri... [more]
UPI001F05E6E02.570e-3835.77ATP-binding protein n=1 Tax=Azospira oryzae TaxID=... [more]
W4LA90_9BACT3.680e-3837.26Uncharacterized protein n=2 Tax=Candidatus Entothe... [more]
A0A7W9A230_9CAUL5.800e-3837.31Histidine kinase n=1 Tax=Brevundimonas halotoleran... [more]
A0A2N3EFK6_9PROT1.310e-3734.60Histidine kinase n=1 Tax=Alphaproteobacteria bacte... [more]
A0A7V5YRS5_9BACT1.570e-3736.12Response regulator n=1 Tax=Bryobacteraceae bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig95contigS-ischiensis_contig95:263027..268869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score142.9
Seed ortholog evalue2.5e-31
Seed eggNOG ortholog941449.dsx2_1158
EggNOG free text desc.response regulator, receiver
EggNOG OGs1R5EN@1224,2MH9G@213115,2WMCQ@28221,42NK9@68525,COG5002@1,COG5002@2
COG Functional cat.T
Best tax levelDesulfovibrionales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size1319
Cds size936
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817429.325886-UTR-S-ischiensis_contig95:263026..2634091622817429.325886-UTR-S-ischiensis_contig95:263026..263409Schizocladia ischiensis KU_0333UTRS-ischiensis_contig95 263027..263409 +
1695741108.847428-UTR-S-ischiensis_contig95:263026..2634091695741108.847428-UTR-S-ischiensis_contig95:263026..263409Schizocladia ischiensis KU_0333UTRS-ischiensis_contig95 263027..263409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817429.3398187-CDS-S-ischiensis_contig95:263409..2634631622817429.3398187-CDS-S-ischiensis_contig95:263409..263463Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 263410..263463 +
1695741108.8663235-CDS-S-ischiensis_contig95:263409..2634631695741108.8663235-CDS-S-ischiensis_contig95:263409..263463Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 263410..263463 +
1622817429.3542602-CDS-S-ischiensis_contig95:264146..2643471622817429.3542602-CDS-S-ischiensis_contig95:264146..264347Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 264147..264347 +
1695741108.879216-CDS-S-ischiensis_contig95:264146..2643471695741108.879216-CDS-S-ischiensis_contig95:264146..264347Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 264147..264347 +
1622817429.3658934-CDS-S-ischiensis_contig95:266212..2663321622817429.3658934-CDS-S-ischiensis_contig95:266212..266332Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 266213..266332 +
1695741108.8945553-CDS-S-ischiensis_contig95:266212..2663321695741108.8945553-CDS-S-ischiensis_contig95:266212..266332Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 266213..266332 +
1622817429.3766503-CDS-S-ischiensis_contig95:267271..2673821622817429.3766503-CDS-S-ischiensis_contig95:267271..267382Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 267272..267382 +
1695741108.9123392-CDS-S-ischiensis_contig95:267271..2673821695741108.9123392-CDS-S-ischiensis_contig95:267271..267382Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 267272..267382 +
1622817429.3890636-CDS-S-ischiensis_contig95:267983..2680991622817429.3890636-CDS-S-ischiensis_contig95:267983..268099Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 267984..268099 +
1695741108.928649-CDS-S-ischiensis_contig95:267983..2680991695741108.928649-CDS-S-ischiensis_contig95:267983..268099Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 267984..268099 +
1622817429.4035761-CDS-S-ischiensis_contig95:268535..2688691622817429.4035761-CDS-S-ischiensis_contig95:268535..268869Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 268536..268869 +
1695741108.9414551-CDS-S-ischiensis_contig95:268535..2688691695741108.9414551-CDS-S-ischiensis_contig95:268535..268869Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 268536..268869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig95.21073.1prot_S-ischiensis_contig95.21073.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig95 263410..268869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig95.21073.1

>prot_S-ischiensis_contig95.21073.1 ID=prot_S-ischiensis_contig95.21073.1|Name=mRNA_S-ischiensis_contig95.21073.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=312bp
MMEIRVKDSGVGISAEDQEHVFERFFRCENASRLADGTGLGLAIVSHIVT
VMGGTIGVESEVGVGSTFVAQLPARLEMDGGHAEEGDSAAKEEKTASDGV
ARYQILVAEDSPPNQRLLRRILENQGHVVDTVADGQAALDALASSHYDLL
MLDLGLPKKTGQEVLQEVRSAPASCVYTDIPIIVISGHALDDHRQMCKEL
GSNAFTAKPFRSETIRTTIASVMREHLAVAGDSSTHTATSASGREASAAT
CAPSSAASGDCAEEVATPPGPLRQAASGSGSRPGASSGGVDEEALLGWQP
SRPSSSVVAGGG
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mRNA from alignment at S-ischiensis_contig95:263027..268869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig95.21073.1 ID=mRNA_S-ischiensis_contig95.21073.1|Name=mRNA_S-ischiensis_contig95.21073.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5843bp|location=Sequence derived from alignment at S-ischiensis_contig95:263027..268869+ (Schizocladia ischiensis KU_0333)
GGGGAGCTGGAGTCCCTCGAACGCAATCAACGAAAAAGCACGTTGACCAC
TTTCCTCGTGAAAAGCTCGCCTGCTGGACGAACAACCGCCTTCCAAGTGC
GGACACACTGCACAAACGCGCTCGAGATGGTGTGATGATAGCTGCCCTGA
ACTCACGTAAGTAGGAACAACTCCTCTTTTCCACTCGCTTTTTGTCTTCA
TGCCAAAAACCACCCTGCGTTGCTGCTGCCGATTTATTTATGTCGACCTG
CAACCCAACCACGATTGACCGTCGATGACTGAATGTAACACAGGTGATTG
TGAACCTTGTCAGCAATGCGGTCAAGTACACGGGGGCTGGGGGCCATATC
AGCATTTCGGCCACCCGGGACGAGGCTAGTGGTATGATGGAGATACGCGT
CAAAGACTCGGGAGTGGGCATATCTGCGGAAGATCAGGTGAGAGAGTGTT
CCACTTGCGGTTGCGTCCGCGTGGTCGGTGTGATTCGTCCATCGGGTGAG
ACGGTGTTGGGCTTTCGATTACACCCACGTTGTGAGTGTGATTCGTCCAC
CGGTGTTGGGCTTTTGATCACGTCCACGTTGTCGGTATGATTCGTCCATC
GGGTGAGGCAAGTTCGACTTTCGGTCACGTCCACGTTGCCACGTTGTTGG
TGTGATTTAAATATGAGTATATGTACACCCCCCGCCCCCGCCGCGTTTTC
CCGTGCGTTCTTCTCTTCCATGCCTTTGTGCCCCGCGAGAGAACGGGAAG
GGATTTTCGTGAGGGTATTGGAGCTTGGGGGACGGGGCCCGGGGCTCTTC
AGTGATCGAAAATTAGCGTTTGGCAATATTCGCTGTGGGCACGATTACAT
TGGTAAGTCGCGGTGGTGACGTCGTGGCAGTGGTACAAATAGTGTTGGGG
TCGTGGTTGTGAGGGTGGTAGTAAGTACTTGAAGAATTGATACGAGTACT
CGAGTACACTACGAGGTGCAGGCCATGTCACTAAAGACCCCAAGCAAGCA
CAGTACTTCAAGTACGAAGTATATGCTTTATACTTCGAATTGTAAGATAT
ACTCGTACTTCCAAGTATACTGAGTATATATATACCCCCTCCCTCCCTCC
ACCCCTCCACCCCCTCTCAGGAGCACGTGTTTGAACGCTTCTTCCGCTGC
GAGAACGCCTCCAGGCTGGCGGACGGGACGGGCCTGGGCCTGGCCATTGT
GTCCCATATCGTGACGGTCATGGGCGGGACCATTGGCGTGGAGAGCGAGG
TGGGCGTGGGGTCCACCTTTGTAGCGCAGCTGCCCGCTCGGCTGGAGATG
GATGGGGGACATGCCGAGGAGGTGAGGGGTGATTCCTATAGGTACAATTG
CACGTGTGTGAGATTGACTGTTCTCGTGTTACTGTAGTGGTGATCACATT
GAAGAATTGAGTGTTCTCGTAGAGGAGGTGAGAGCGAGCTGGGCGTGGGC
TCCACCTTTGTGGCACACCTGCCCGCTCACCTGGAAATGGATGGGGGACA
CGCCGAGGAGGTGAGGGGTGATTCACACTTCGAAGTATTGATTGTAACGA
GGTACAATCGCGCGTATGTAAGATCGAGTGTTCTCGTATTAGTGGTTGTC
CCATTCAAGAATTAAGTGTTCTTATATTGGTGGGGAGATGGATGGGGGGC
ACGCCGAGGAGGTGAGGGTTACCATAGTCGTCGGAGAGATCTTGCCCCCC
CATGCCAATTTCAAGAGAACTCTTCTCGCCGAATCCTGGGCGGATTCGCG
CAGGAAAACTCGGAAAATCTCCCTCAGGACCTGGGGGAACCTTTCGGAGA
GTTTTTGGGACAATTCAGAAACTCCCCGGCTAGATACATTCCCCCCGAAA
ATTGTCCCGTGAGGGCAAAATCTGTCCGACGACTACGGTACTTCCAAGTA
TTGCTACGGCCGACTCAAAGACCGTGGGGTGATGGGGTGATTCATATAAA
TTGTAACGAGGTACAATCGCATGTGTGTGAGATTGACTGTTCTCGTATTT
ATAGTTGTCCCATTTAAGAGTTGAGTGTTCTCGTGGAGGAGGTGAGGGGT
ATTTCAAAACCGTGGCGTGATGTGGTGCGGATGCATTCCATGTCCAACTA
TAGCCCCCGCCCCCTCCTCCTCCTCCTCTTCCTGCCTAACGCGCTCAATC
CCTGGCGAGCTGAGGAAGGTGCACTGTTGAGGCCCTTAATGACGCGGTCC
GCACCTAACATAGCCTAATGTTGTTGCTGTCGATATGCCACAAGTGGGGG
AGAGGAGAGGAGAGGAGAGGACACCTCGCGTCAAATCGCATTGCAGGGGG
GCATTGAGACTGGCTCGGGCGACCCGCCACGGGGCCTTTCACGACGACGG
CCGACATCACGACTGGTGGTTGACTAACATGTTGCCGCGACTGGGCTGCA
AAACAAAAATGTAGCGGTCAATTGTTTGCTGCAGCACAGTATCACCAGGG
GAAACACGGGGCAAGGTGCAGGCCACGTCGCCACATCACTACAAAGCTCA
ACAATGGCCCTTCCTCAGCTCACCAGCACAGTACAGTGGTACAGTAGTAC
ACAGTGGTGCTGCTGCTTGGAAGTGTGTACTGTACTGTACTGTAGCGGCA
CTTGTACAGTACCCGAGTACATACAGTACATGCACTGCTTGGATGTCTAT
ACTCGAGTATACCTGCACCGTATACTCGGCAACTATAAATATACTACGTA
CGTGCGCTCGTCGACTTGCCTTGCCGACACAGCCGCGCGTGCGTGGGCGC
GTAGTCGACAGCCCCGAACGAAGCCACACGTATAAGAAGTGCCCACTGTG
AGCACAAGAGACCCCCTTCCCCGCCCCCTTCCTTCTTTATTTTTTGTTTT
TTTCTTCTTGCCCTGCGAGGGAAGGAAGGGCTTCGTTGAGTCCTGTTTTG
GGACGAGCCTTTTGGCACGGGGCCTGTGAGCTCGCCGCTTATCTACCACT
CAATTAAGAACGGCCCGCACATCGTCTCTGTCCGTTGTTGTTGTTGTTGG
CAGGTAGAATTCAGCATTGATAAAGAATATTGATCGATCGTGTTGATGAA
ATGTTTAATATTGATTGACAGTTTGAGAAATCAATCAATATTCGATACGT
TTTTTGAATATTGATTGAAAATCGCGGAAATGTTGAACAATTTGATATTA
ACGATTTTCGGCATCAACACTGAACTCTGTTGGCAGGGCGACTCAGCGGC
CAAGGAAGAGAAGACCGCATCGGACGGGGTGGCCCGCTACCAGATACTGG
TGGCGGAGGACTCGCCCCCCAACCAACGCCTCCTCAGGCGCATACTGGAG
AACCAGGTGGGGGTGATACGGGATGATGCGGTTTGATGCCATGTGATGCG
ACCTGTGCTCCAATGTAGCTCCCTCCCCCCTCCTTCCACCTTTTTCTTTA
TTTTCTGCTCTATATGCCCTGCGAGTGAAGGCGAGTGAAAGGAAGGGCCT
ACGGGGGTGGGGCCCTGACCTCTTCTTTCCCACTCGCTTGTTTGTCTTCC
TGCACAAAACTTCCTTACGGTCGTGCACTTGGGCATCCCATTCCGTCGCT
GACACCCCGGTTCATGGGGCTGTCTAATATGAGAACCGGGTGGGGATGCG
TGACGTGATGCGATGTACTGTAATGTGATGTGATGTGATGTGCACTCCAT
GGTAGTGTATTTTTCGCATGAAGATAAAGAGCGAGTGGAAAAGAAGAGGT
GTTCCTACTTACGCGAGTTCAGGGCCCCCTGCCCCGGAAGCCCGTCTTTT
TCACTCTGCTTCACTCGCAGGGCACATAGAGCAGAAAAGTGTGTTTACAG
TACTTGGACATCACACCGCATTGCTGACGGCCCGGCTCGTGGTCTGATCA
TGATGGCCGGGTGGGGATGCGTGATGTGATTCGATGCGTACAGTAGGCAA
GTGTGTTTGAACAACTGGGTCCCCCCCCCGACTACTCGAGTGATGCTATA
GTGGCGCCGTGCATGAACATTCGCTCCCGGGGGCACTTGATGGCCACGGT
GTCGGAAGGCCAGGTTGCGCCAAGTACGGTAGGGTGCTCTGATAGTTTTC
TGAGTGTGTGAATATTATTGAGATTACCGCTGGGCGAGGTGCGAACAGTC
TAGAGCCCACTGGGGAAGTCAAAGACCATGTACAAGTGTACTTGCACTGG
AAGTTCTCAACATCAAGGCAAGTTGTAATCAAGAACACATGTTCAACAGT
CCACCCCCAATGACAGAAAGCTCCACTGCGTGCGACCGCTCCCAGGGCCA
CGTGGTGGACACAGTGGCGGATGGCCAGGCTGCATTGGACGCGCTTGCCT
CCAGCCACTACGACCTCCTCATGCTGGATCTGGGGCTCCCCAAGAAGACT
GGGCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGC
GCGCGCACATGTGAGTGCGTGTACGTGTGTGGGCTGAACGATTGTGCCTC
TGCGTGGTGCGTGCGTGTTCTGTGTGTGTGTCCATGCGAGTGTGGCATCT
CTCGCCACTCCCGTCGGCGTAAGCACGTGCGCACCCAAATATGTGTGCGT
GCGCGCGCGCCCGCGGCACAACACGACGGCCGCCGTCGCAGTCACGCTGC
CAGCGAGCACGCCCGAGACACGTGTCCCCAAGAGCCGCAAGCCGCTTAAG
TACTCCCGCCGCCTAGCCAGGCCAATAATTGCAAGCACCTCTACTCCAAA
GCACATGAGCACTTTTCCATGACCGGGCCTCAATCTCCTGGGCGAGCCTC
CAACAGCTGTAGTGCCATCTGCTTGCCCGTCGATCGTGCCCTGCTCACCC
ACCGACGCCGACGCCGACACCGCGGCGGGTCACGACGAGCCCACCAATAC
GAGAACACTCAATTCTTAAATGGGATAGCCACTAATACGATAACACTCAA
TCTCACACACGTGCGATTGCACCTCGCTACAATTTGTGTGAATCACGACC
CCACCAGGAGGTGCTGCAGGAGGTCCGGAGCGCGCCCGCGTCGTGCGTGT
ACACCGACATCCCCATCATCGTCATCTCGGGCCATGCGCTGGACGACCAC
CGACAGATGTGCAAGGAGCTGGGGTGAGTGTGCCAGCGCGAATGACCAGG
AAGGAGGGAGCGAGCGATAATTGCGTACAAGTAGGTAGGCTTGTCTTGTC
TTAATGCTTCCACAATCCAATCAACGAAGCATTATCAACTGCTGTTGAAC
GGTTCACCCAATCAATCTCGACGAGGACACTCAACATCTGCGATATGATG
TGATGTGATGTTTACTCCGATGCACTGTACGGAAGTAGTTTGACATCACA
TCACATCGCATCTCCCATTTCGACTAGTATCAGCTGGTACTGTTTCGCCC
GCCCAATCTCTACGAGGACGCTCAATGTCACACGGTGAGGTTGTACCTCG
TTACAGTTTGCGATGCGATGTGATGTGATGTTACTCTGTTTAACATCGCT
GCCATCCCTGCCCCCACCCCCCCCCCCTGCCGCCACCGCCACCGCCGCCG
CCTGCCCAGGTCAAACGCCTTCACCGCCAAGCCCTTCCGTTCCGAGACCA
TCCGCACCACCATCGCCAGCGTCATGCGGGAGCACCTCGCGGTGGCCGGC
GATTCATCGACACACACCGCCACCTCTGCTTCCGGGCGCGAGGCCTCGGC
GGCCACCTGCGCCCCCTCCTCCGCCGCCTCCGGCGACTGTGCGGAAGAAG
TCGCTACGCCGCCCGGGCCTCTTCGCCAGGCGGCGAGCGGGTCGGGGTCA
AGGCCGGGGGCCTCAAGTGGAGGCGTTGATGAGGAAGCGTTGCTGGGGTG
GCAACCATCGCGGCCGTCCTCGAGCGTGGTTGCGGGGGGCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig95:263027..268869+

>mRNA_S-ischiensis_contig95.21073.1 ID=mRNA_S-ischiensis_contig95.21073.1|Name=mRNA_S-ischiensis_contig95.21073.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1872bp|location=Sequence derived from alignment at S-ischiensis_contig95:263027..268869+ (Schizocladia ischiensis KU_0333)
ATGATGGAGATACGCGTCAAAGACTCGGGAGTGGGCATATCTGCGGAAGA
TCAGATGATGGAGATACGCGTCAAAGACTCGGGAGTGGGCATATCTGCGG
AAGATCAGGAGCACGTGTTTGAACGCTTCTTCCGCTGCGAGAACGCCTCC
AGGCTGGCGGACGGGACGGGCCTGGGCCTGGCCATTGTGTCCCATATCGT
GACGGTCATGGGCGGGACCATTGGCGTGGAGAGCGAGGTGGGCGTGGGGT
CCACCTTTGTAGCGCAGCTGCCCGCTCGGCTGGAGATGGATGGGGGACAT
GCCGAGGAGGAGCACGTGTTTGAACGCTTCTTCCGCTGCGAGAACGCCTC
CAGGCTGGCGGACGGGACGGGCCTGGGCCTGGCCATTGTGTCCCATATCG
TGACGGTCATGGGCGGGACCATTGGCGTGGAGAGCGAGGTGGGCGTGGGG
TCCACCTTTGTAGCGCAGCTGCCCGCTCGGCTGGAGATGGATGGGGGACA
TGCCGAGGAGGGCGACTCAGCGGCCAAGGAAGAGAAGACCGCATCGGACG
GGGTGGCCCGCTACCAGATACTGGTGGCGGAGGACTCGCCCCCCAACCAA
CGCCTCCTCAGGCGCATACTGGAGAACCAGGGCGACTCAGCGGCCAAGGA
AGAGAAGACCGCATCGGACGGGGTGGCCCGCTACCAGATACTGGTGGCGG
AGGACTCGCCCCCCAACCAACGCCTCCTCAGGCGCATACTGGAGAACCAG
GGCCACGTGGTGGACACAGTGGCGGATGGCCAGGCTGCATTGGACGCGCT
TGCCTCCAGCCACTACGACCTCCTCATGCTGGATCTGGGGCTCCCCAAGA
AGACTGGGCAGGGCCACGTGGTGGACACAGTGGCGGATGGCCAGGCTGCA
TTGGACGCGCTTGCCTCCAGCCACTACGACCTCCTCATGCTGGATCTGGG
GCTCCCCAAGAAGACTGGGCAGGAGGTGCTGCAGGAGGTCCGGAGCGCGC
CCGCGTCGTGCGTGTACACCGACATCCCCATCATCGTCATCTCGGGCCAT
GCGCTGGACGACCACCGACAGATGTGCAAGGAGCTGGGGAGGTGCTGCAG
GAGGTCCGGAGCGCGCCCGCGTCGTGCGTGTACACCGACATCCCCATCAT
CGTCATCTCGGGCCATGCGCTGGACGACCACCGACAGATGTGCAAGGAGC
TGGGGTCAAACGCCTTCACCGCCAAGCCCTTCCGTTCCGAGACCATCCGC
ACCACCATCGCCAGCGTCATGCGGGAGCACCTCGCGGTGGCCGGCGATTC
ATCGACACACACCGCCACCTCTGCTTCCGGGCGCGAGGCCTCGGCGGCCA
CCTGCGCCCCCTCCTCCGCCGCCTCCGGCGACTGTGCGGAAGAAGTCGCT
ACGCCGCCCGGGCCTCTTCGCCAGGCGGCGAGCGGGTCGGGGTCAAGGCC
GGGGGCCTCAAGTGGAGGCGTTGATGAGGAAGCGTTGCTGGGGTGGCAAC
CATCGCGGCCGTCCTCGAGCGTGGTTGCGGGGGGCGGGGTCAAACGCCTT
CACCGCCAAGCCCTTCCGTTCCGAGACCATCCGCACCACCATCGCCAGCG
TCATGCGGGAGCACCTCGCGGTGGCCGGCGATTCATCGACACACACCGCC
ACCTCTGCTTCCGGGCGCGAGGCCTCGGCGGCCACCTGCGCCCCCTCCTC
CGCCGCCTCCGGCGACTGTGCGGAAGAAGTCGCTACGCCGCCCGGGCCTC
TTCGCCAGGCGGCGAGCGGGTCGGGGTCAAGGCCGGGGGCCTCAAGTGGA
GGCGTTGATGAGGAAGCGTTGCTGGGGTGGCAACCATCGCGGCCGTCCTC
GAGCGTGGTTGCGGGGGGCGGG
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