mRNA_S-ischiensis_contig95.21069.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig95.21069.1
Unique NamemRNA_S-ischiensis_contig95.21069.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig95.21069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig95contigS-ischiensis_contig95:242445..244892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size537
Cds size534
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig95.21069.1prot_S-ischiensis_contig95.21069.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig95 242445..244890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817425.863701-CDS-S-ischiensis_contig95:242444..2425011622817425.863701-CDS-S-ischiensis_contig95:242444..242501Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 242445..242501 +
1695741106.1112506-CDS-S-ischiensis_contig95:242444..2425011695741106.1112506-CDS-S-ischiensis_contig95:242444..242501Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 242445..242501 +
1622817425.8778365-CDS-S-ischiensis_contig95:243643..2438641622817425.8778365-CDS-S-ischiensis_contig95:243643..243864Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 243644..243864 +
1695741106.1246045-CDS-S-ischiensis_contig95:243643..2438641695741106.1246045-CDS-S-ischiensis_contig95:243643..243864Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 243644..243864 +
1622817425.8892903-CDS-S-ischiensis_contig95:244634..2448901622817425.8892903-CDS-S-ischiensis_contig95:244634..244890Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 244635..244890 +
1695741106.137754-CDS-S-ischiensis_contig95:244634..2448901695741106.137754-CDS-S-ischiensis_contig95:244634..244890Schizocladia ischiensis KU_0333CDSS-ischiensis_contig95 244635..244890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig95.21069.1

>prot_S-ischiensis_contig95.21069.1 ID=prot_S-ischiensis_contig95.21069.1|Name=mRNA_S-ischiensis_contig95.21069.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=178bp
CATNGTCRSSADDRTRCAPARDQEQYEKHAEFGAPQEEELEEEEEEEKDE
GGVLGDDAGAGGGEAGSRSRGEAPKRPFVGLIVGIDTTPSEFMYFQCLEV
DNPLNSKRKLHVPVRIWQRETASMMALEGGGGSGSCGDNTPAPGDETLSS
RARWRAQVLARASALECQRRSARALLEH
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mRNA from alignment at S-ischiensis_contig95:242445..244892+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig95.21069.1 ID=mRNA_S-ischiensis_contig95.21069.1|Name=mRNA_S-ischiensis_contig95.21069.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2448bp|location=Sequence derived from alignment at S-ischiensis_contig95:242445..244892+ (Schizocladia ischiensis KU_0333)
TGTGCCACGAACGGGACATGCAGAAGCAGCGCTGATGACCGCACGCGTTG
CGCACCTGCAAGTGCACGATGAAGAACGTGTTAGTAACGCCACCCAGAAA
ATCAGTCGAACTCGCTTCTTTTCTTCATACGCAAAAATCAGTCGAGCCCG
ATAACTATCTACTGATCGGTAACCCATCACTTGTACTTAGAAGTGCTTGG
GAGTGTACAGTGGGCTCTAGTCTCAATGACAGTGCTGGATCAGCGCTGCT
CGCTGGTACGTTGCTGAGCCTGGTCGGTGTGTACCCGGCATCGCTCCGTA
CGGGCCTATTAGGGATGGGCGATGCCCCCCGGCCCTGTCTTACCCGGCAG
GGCTGGCCGGCATTTCTGCTGGGCCACGTGCGAGTGGCATGTACTTCCGG
AAGTAGAGTACTTATGTAGCACACTGTGACGTGCGATGTGCATGCGAGGG
AGTACCCACAGAGCCGCGCCCTTCATCAGCTAAGCTCTCTCGTCTTACCA
GGCACTATCAACGAATGTACCTACTGAATGTGCGACACAGACAGATTGTC
ACTATCCAGGGTACAATCAGCTGACCAAAGTCCCCTTGGACGACTACAAG
GCTGTAGCCACTCCAACTGGCCTCCTCCTCCCCCCCTCCTCCTCCTGCTC
CCcctCCTCCCCCCCCTCCTCCTCTTCCTCCTCCTGCTCTCCCTCCTCTT
CCTCCTCCTGCTCCTCTTCCTCCCCCTCCTcCCCCTCCCCCTCCTCCTCC
TCCTCCTCCTCCTCTCCTCCTCCTCCTCCCCCCCCTCCTCCTCCTCCTGC
TCCTCCTCCTCCTGCTCCCCGTCCTCCCCCCCCTCCTCCTCTTCCTCCTC
CTGCTCCCCTTCCTCCCCCCCCCCCTCCCCCCCCCCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCGTCCTCCTCCTCGTCCTCCCCCCCCTCCTGCCCT
CCCCCTTCCTCCTTCTCACTATCATCATCATCCCCCCCCCCCCGCACCAT
CCTGTATCGTCCATTGGTGTCCCCTGCCGCGACGCGGTCCGCACTATGCT
CCTCCAAGTGACACTCCATCGCCCACAGCAAAGCCACCTGGCCTCCGACA
TGCCTCATGGCAAGCGACTGAAATTTAACTCCTTCCCCCGCCCCGTCCCC
GGACGGTCCTACGTCCACGGGCGCGGAAAAAAATCTGACCCCCGTCCAGG
CGAGGGATCAGGAGCAATATGAGAAGCATGCCGAGTTCGGCGCTCCGCAA
GAGGAGGAGCTCGAGGAGGAGGAGGAGGAGGAAAAGGATGAGGGAGGGGT
GCTAGGGGATGATGCGGGGGCCGGGGGCGGGGAGGCCGGCTCGCGCTCCC
GGGGGGAGGCGCCCAAGAGACCTTTCGTCGGGCTCATTGTGGGCATCGAC
ACCACACCGTCCGAATTCATGTGAGGGCTGGCGTTCAAACTTGACTTTTT
TGCCGCTTTGACTTGGAACCCTGGTGTGCGGTTCGTTATTGACGGAAAAA
TAGCAAGGGGTTTACTGCGGTGTGTGTGTGTGCTCGAGGACACCTTCCTC
CAGGAGCGAGGGGCTAACAACCCTCATGGCGAACAGAGCCGAGAAGGTTT
TGAGCTATGACTGTGGTGCTCTACAACTCTTTTGCCTGCCTCAACCCTGG
CGCATTTTACCGAAAGATGCCTACTGTAGGGGTTTGCTGCGGTGTGTGTG
TGTGTGCACGTTCCGGAGGGGGGGGGGAAGGGAACCTTTAGGGCTCACAA
CCCTCACGGCAAACAGAGGCGAGCAGGTTTAGCGACCGTGGCCCTTTTGC
TCACCTCGACCCCGGCGTACACGGAACGATGCAGGTTTGCTGCAGTGTGA
GGGTATTTTGCAGAGGTTAGTTAACAGCCCTCACGCCAAATAGGGGTGAA
AATGTTTCCGCAATGTGGATGCCCGTTGGCTTTGCTGGAGCCTGGTGTGC
ACGGCACAGCACGGTTGTTGGTACTGCGGCGCGTGTCCTCCAGTACACCC
TTCCTGGGGCAAAACAACCCTTGCGCCACACAGACGCGGTACAGCACAGT
ACATAGTACTCTACTACTTCCGTATATACAAGTATTTGAAGTAGTACTGG
AGTACGTGCTCGAGTACGTGAACATCAATCCCGGCCGTGCCCGCGCCTCT
CGCCCCCGCCACGTACCCGCACCCCCCCCCCCCCCCGCAGGTACTTCCAA
TGCCTGGAGGTGGACAACCCGCTCAACTCCAAGCGGAAGCTCCACGTGCC
TGTGCGCATCTGGCAGAGGGAGACGGCCAGCATGATGGCCCTGGAAGGCG
GTGGCGGCAGCGGCAGCTGCGGCGACAACACCCCTGCCCCGGGTGATGAG
ACGTTGAGCTCCCGGGCCCGGTGGCGGGCCCAGGTGCTGGCCAGGGCGTC
CGCCCTGGAGTGCCAGCGGCGCAGTGCCCGGGCCCTTCTCGAGCACGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig95:242445..244892+

>mRNA_S-ischiensis_contig95.21069.1 ID=mRNA_S-ischiensis_contig95.21069.1|Name=mRNA_S-ischiensis_contig95.21069.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1068bp|location=Sequence derived from alignment at S-ischiensis_contig95:242445..244892+ (Schizocladia ischiensis KU_0333)
TGTGCCACGAACGGGACATGCAGAAGCAGCGCTGATGACCGCACGCGTTG
CGCACCTTGTGCCACGAACGGGACATGCAGAAGCAGCGCTGATGACCGCA
CGCGTTGCGCACCTGCGAGGGATCAGGAGCAATATGAGAAGCATGCCGAG
TTCGGCGCTCCGCAAGAGGAGGAGCTCGAGGAGGAGGAGGAGGAGGAAAA
GGATGAGGGAGGGGTGCTAGGGGATGATGCGGGGGCCGGGGGCGGGGAGG
CCGGCTCGCGCTCCCGGGGGGAGGCGCCCAAGAGACCTTTCGTCGGGCTC
ATTGTGGGCATCGACACCACACCGTCCGAATTCATGCGAGGGATCAGGAG
CAATATGAGAAGCATGCCGAGTTCGGCGCTCCGCAAGAGGAGGAGCTCGA
GGAGGAGGAGGAGGAGGAAAAGGATGAGGGAGGGGTGCTAGGGGATGATG
CGGGGGCCGGGGGCGGGGAGGCCGGCTCGCGCTCCCGGGGGGAGGCGCCC
AAGAGACCTTTCGTCGGGCTCATTGTGGGCATCGACACCACACCGTCCGA
ATTCATGTACTTCCAATGCCTGGAGGTGGACAACCCGCTCAACTCCAAGC
GGAAGCTCCACGTGCCTGTGCGCATCTGGCAGAGGGAGACGGCCAGCATG
ATGGCCCTGGAAGGCGGTGGCGGCAGCGGCAGCTGCGGCGACAACACCCC
TGCCCCGGGTGATGAGACGTTGAGCTCCCGGGCCCGGTGGCGGGCCCAGG
TGCTGGCCAGGGCGTCCGCCCTGGAGTGCCAGCGGCGCAGTGCCCGGGCC
CTTCTCGAGCACGTACTTCCAATGCCTGGAGGTGGACAACCCGCTCAACT
CCAAGCGGAAGCTCCACGTGCCTGTGCGCATCTGGCAGAGGGAGACGGCC
AGCATGATGGCCCTGGAAGGCGGTGGCGGCAGCGGCAGCTGCGGCGACAA
CACCCCTGCCCCGGGTGATGAGACGTTGAGCTCCCGGGCCCGGTGGCGGG
CCCAGGTGCTGGCCAGGGCGTCCGCCCTGGAGTGCCAGCGGCGCAGTGCC
CGGGCCCTTCTCGAGCAC
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